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nixpkgs/pkgs/applications/science/math/sage/sage-src.nix
2018-08-04 14:22:28 +02:00

142 lines
5.2 KiB
Nix

{ stdenv
, fetchFromGitHub
, fetchpatch
}:
stdenv.mkDerivation rec {
version = "8.3";
name = "sage-src-${version}";
src = fetchFromGitHub {
owner = "sagemath";
repo = "sage";
rev = version;
sha256 = "0mbm99m5xry21xpi4q3q96gx392liwbifywf5awvl0j85a7rkfyx";
};
nixPatches = [
# https://trac.sagemath.org/ticket/25809
./patches/spkg-scripts.patch
# https://trac.sagemath.org/ticket/25309
(fetchpatch {
name = "spkg-paths.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=97f06fddee920399d4fcda65aa9b0925774aec69&id=a86151429ccce1ddd085e8090ada8ebdf02f3310";
sha256 = "1xb9108rzzkdhn71vw44525620d3ww9jv1fph5a77v9y7nf9wgr7";
})
(fetchpatch {
name = "maxima-fas.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=97f06fddee920399d4fcda65aa9b0925774aec69";
sha256 = "14s50yg3hpw9cp3v581dx7zfmpm2j972im7x30iwki8k45mjvk3i";
})
# https://trac.sagemath.org/ticket/25722
./patches/test-in-tmpdir.patch
# https://trac.sagemath.org/ticket/25358
(fetchpatch {
name = "safe-directory-test-without-patch.patch";
url = "https://git.sagemath.org/sage.git/patch?id2=8bdc326ba57d1bb9664f63cf165a9e9920cc1afc&id=dc673c17555efca611f68398d5013b66e9825463";
sha256 = "1hhannz7xzprijakn2w2d0rhd5zv2zikik9p51i87bas3nc658f7";
})
# Unfortunately inclusion in upstream sage was rejected. Instead the bug was
# fixed in python, but of course not backported to 2.7. So we'll probably
# have to keep this around until 2.7 is deprecated.
# https://trac.sagemath.org/ticket/25316
# https://github.com/python/cpython/pull/7476
./patches/python-5755-hotpatch.patch
# https://trac.sagemath.org/ticket/25315
(fetchpatch {
name = "find-libraries-in-dyld-library-path.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=20d4593876ce9c6004eac2ab6fd61786d0d96a06";
sha256 = "1k3afq3qlzmgqwx6rzs5wv153vv9dsf5rk8pi61g57l3r3npbjmc";
})
# https://trac.sagemath.org/ticket/25345
# (upstream patch doesn't apply on 8.2 source)
./patches/dochtml-optional.patch
];
packageUpgradePatches = [
(fetchpatch {
name = "cypari2-1.2.1.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=62fe6eb15111327d930336d4252d5b23cbb22ab9";
sha256 = "1xax7vvs8h4xip16xcsp47xdb6lig6f2r3pl8cksvlz8lhgbyxh2";
})
# matplotlib 2.2.2 deprecated `normed` (replaced by `density`).
# This patch only ignores the warning. It would be equally easy to fix it
# (by replacing all mentions of `normed` by `density`), but its better to
# stay close to sage upstream. I didn't open an upstream ticket about it
# because the matplotlib update also requires a new dependency (kiwisolver)
# and I don't want to invest the time to learn how to add it.
./patches/matplotlib-normed-deprecated.patch
# Update to 20171219 broke the doctests because of insignificant precision
# changes, make the doctests less fragile.
# I didn't open an upstream ticket because its not entirely clear if
# 20171219 is really "released" yet. It is listed on the github releases
# page, but not marked as "latest release" and the homepage still links to
# the last version.
./patches/eclib-regulator-precision.patch
# New glpk version has new warnings, filter those out until upstream sage has found a solution
# https://trac.sagemath.org/ticket/24824
./patches/pari-stackwarn.patch # not actually necessary since tha pari upgrade, but necessary for the glpk patch to apply
(fetchpatch {
url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/dt-version-glpk-4.65-ignore-warnings.patch";
sha256 = "0b9293v73wb4x13wv5zwyjgclc01zn16msccfzzi6znswklgvddp";
stripLen = 1;
})
# Only formatting changes.
# https://trac.sagemath.org/ticket/25260
./patches/numpy-1.14.3.patch
# https://trac.sagemath.org/ticket/25862
./patches/eclib-20180710.patch
# https://trac.sagemath.org/ticket/24735
./patches/singular-4.1.1p2.patch
# https://trac.sagemath.org/ticket/25567 and dependency #25635
(fetchpatch {
name = "pari-upgrade-dependency.patch";
url = "https://git.sagemath.org/sage.git/patch/?id=6995e7cae1b3476ad0145f8dfc897cf91f0c3c4d";
sha256 = "1dvhabl1c9pwd9xkjvbjjg15mvb14b24p1f3cby1mlqk34d4lrs6";
})
(fetchpatch {
name = "pari-2.11.0.patch";
url = "https://git.sagemath.org/sage.git/patch/?id=7af4748cab37d651eaa88be501db88f4a5ffc584";
sha256 = "13f740ly3c19gcmhjngiycvmc3mcfj61y00i6jv0wmfgpm2z3ank";
})
];
patches = nixPatches ++ packageUpgradePatches ++ [
./patches/known-padics-bug.patch
];
postPatch = ''
# make sure shebangs etc are fixed, but sage-python23 still works
find . -type f -exec sed \
-e 's/sage-python23/python/g' \
-i {} \;
echo '#!${stdenv.shell}
python "$@"' > build/bin/sage-python23
# Do not use sage-env-config (generated by ./configure).
# Instead variables are set manually.
echo '# do nothing' > src/bin/sage-env-config
'';
configurePhase = "# do nothing";
buildPhase = "# do nothing";
installPhase = ''
cp -r . "$out"
'';
}