{ stdenv , fetchFromGitHub , fetchpatch }: stdenv.mkDerivation rec { version = "8.3"; name = "sage-src-${version}"; src = fetchFromGitHub { owner = "sagemath"; repo = "sage"; rev = version; sha256 = "0mbm99m5xry21xpi4q3q96gx392liwbifywf5awvl0j85a7rkfyx"; }; nixPatches = [ # https://trac.sagemath.org/ticket/25809 ./patches/spkg-scripts.patch # https://trac.sagemath.org/ticket/25309 (fetchpatch { name = "spkg-paths.patch"; url = "https://git.sagemath.org/sage.git/patch/?h=97f06fddee920399d4fcda65aa9b0925774aec69&id=a86151429ccce1ddd085e8090ada8ebdf02f3310"; sha256 = "1xb9108rzzkdhn71vw44525620d3ww9jv1fph5a77v9y7nf9wgr7"; }) (fetchpatch { name = "maxima-fas.patch"; url = "https://git.sagemath.org/sage.git/patch/?h=97f06fddee920399d4fcda65aa9b0925774aec69"; sha256 = "14s50yg3hpw9cp3v581dx7zfmpm2j972im7x30iwki8k45mjvk3i"; }) # https://trac.sagemath.org/ticket/25722 ./patches/test-in-tmpdir.patch # https://trac.sagemath.org/ticket/25358 (fetchpatch { name = "safe-directory-test-without-patch.patch"; url = "https://git.sagemath.org/sage.git/patch?id2=8bdc326ba57d1bb9664f63cf165a9e9920cc1afc&id=dc673c17555efca611f68398d5013b66e9825463"; sha256 = "1hhannz7xzprijakn2w2d0rhd5zv2zikik9p51i87bas3nc658f7"; }) # Unfortunately inclusion in upstream sage was rejected. Instead the bug was # fixed in python, but of course not backported to 2.7. So we'll probably # have to keep this around until 2.7 is deprecated. # https://trac.sagemath.org/ticket/25316 # https://github.com/python/cpython/pull/7476 ./patches/python-5755-hotpatch.patch # https://trac.sagemath.org/ticket/25315 (fetchpatch { name = "find-libraries-in-dyld-library-path.patch"; url = "https://git.sagemath.org/sage.git/patch/?h=20d4593876ce9c6004eac2ab6fd61786d0d96a06"; sha256 = "1k3afq3qlzmgqwx6rzs5wv153vv9dsf5rk8pi61g57l3r3npbjmc"; }) # https://trac.sagemath.org/ticket/25345 # (upstream patch doesn't apply on 8.2 source) ./patches/dochtml-optional.patch ]; packageUpgradePatches = [ (fetchpatch { name = "cypari2-1.2.1.patch"; url = "https://git.sagemath.org/sage.git/patch/?h=62fe6eb15111327d930336d4252d5b23cbb22ab9"; sha256 = "1xax7vvs8h4xip16xcsp47xdb6lig6f2r3pl8cksvlz8lhgbyxh2"; }) # matplotlib 2.2.2 deprecated `normed` (replaced by `density`). # This patch only ignores the warning. It would be equally easy to fix it # (by replacing all mentions of `normed` by `density`), but its better to # stay close to sage upstream. I didn't open an upstream ticket about it # because the matplotlib update also requires a new dependency (kiwisolver) # and I don't want to invest the time to learn how to add it. ./patches/matplotlib-normed-deprecated.patch # Update to 20171219 broke the doctests because of insignificant precision # changes, make the doctests less fragile. # I didn't open an upstream ticket because its not entirely clear if # 20171219 is really "released" yet. It is listed on the github releases # page, but not marked as "latest release" and the homepage still links to # the last version. ./patches/eclib-regulator-precision.patch # New glpk version has new warnings, filter those out until upstream sage has found a solution # https://trac.sagemath.org/ticket/24824 ./patches/pari-stackwarn.patch # not actually necessary since tha pari upgrade, but necessary for the glpk patch to apply (fetchpatch { url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/dt-version-glpk-4.65-ignore-warnings.patch"; sha256 = "0b9293v73wb4x13wv5zwyjgclc01zn16msccfzzi6znswklgvddp"; stripLen = 1; }) # Only formatting changes. # https://trac.sagemath.org/ticket/25260 ./patches/numpy-1.14.3.patch # https://trac.sagemath.org/ticket/25862 ./patches/eclib-20180710.patch # https://trac.sagemath.org/ticket/24735 ./patches/singular-4.1.1p2.patch # https://trac.sagemath.org/ticket/25567 and dependency #25635 (fetchpatch { name = "pari-upgrade-dependency.patch"; url = "https://git.sagemath.org/sage.git/patch/?id=6995e7cae1b3476ad0145f8dfc897cf91f0c3c4d"; sha256 = "1dvhabl1c9pwd9xkjvbjjg15mvb14b24p1f3cby1mlqk34d4lrs6"; }) (fetchpatch { name = "pari-2.11.0.patch"; url = "https://git.sagemath.org/sage.git/patch/?id=7af4748cab37d651eaa88be501db88f4a5ffc584"; sha256 = "13f740ly3c19gcmhjngiycvmc3mcfj61y00i6jv0wmfgpm2z3ank"; }) ]; patches = nixPatches ++ packageUpgradePatches ++ [ ./patches/known-padics-bug.patch ]; postPatch = '' # make sure shebangs etc are fixed, but sage-python23 still works find . -type f -exec sed \ -e 's/sage-python23/python/g' \ -i {} \; echo '#!${stdenv.shell} python "$@"' > build/bin/sage-python23 # Do not use sage-env-config (generated by ./configure). # Instead variables are set manually. echo '# do nothing' > src/bin/sage-env-config ''; configurePhase = "# do nothing"; buildPhase = "# do nothing"; installPhase = '' cp -r . "$out" ''; }