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Author SHA1 Message Date
Martin Weinelt 8c7d490da6 python3Packages.pyslurm: 19-05-0 -> 21.08.4 
Unbreaks the package.
 2022-04-15 03:17:40 +02:00
Martin Weinelt 9a9f7b940b python3Packages.pytorch-bin: don't build on hydra 
It won't complete anyhow, as it exceeds the recently increased maximum
output size by another 200 MB.

https://hydra.nixos.org/build/173626214
 2022-04-15 03:17:39 +02:00
Martin Weinelt 4e4e4a570f python3Packages.trytond: fix werkzeug2.1 compat in test suite 2022-04-15 03:17:39 +02:00
Martin Weinelt 8e3fae565c python3Packages.chalice: relax jmespath constraint 
48511562f1
 2022-04-15 03:17:39 +02:00
Martin Weinelt 2f7893fbf6 python3Packages.sanic: disable test_noisy_exceptions 
Sometimes the noisy exceptions output is missing, which makes the test flaky.
 2022-04-15 03:17:39 +02:00
Martin Weinelt 77e83e985a python3Packages.scikit-build: fix build 
Drops code that references non-existant distutils object and then:

- Migrates to pyproject,
- uses pytestCheckHook,
- trims checkInputs.
 2022-04-15 03:17:39 +02:00
Martin Weinelt cc58bb1169 python3Packages.matchpy: 0.5.1 -> 0.5.5 2022-04-15 03:17:39 +02:00
Martin Weinelt 60d698f8bf python3Packages.datasette: relax click & jinja2 constraints 
Move substituion into postPatch, the canonical place for this kind of
operation.
 2022-04-15 01:39:56 +02:00
Martin Weinelt b08880a4f8 python3Packages.ansible-runner: build requires pbr 2022-04-15 01:39:56 +02:00
Martin Weinelt 50907e3009 python3Packages.kivy-garden: fix source 2022-04-15 01:39:56 +02:00
Frederik Rietdijk 498a4d8feb python3Packages.jaxlib: set platforms 2022-04-15 01:39:56 +02:00
Martin Weinelt b95480efb1 fava: 1.19 -> 1.21; fix Werkzeug compat 2022-04-15 01:39:56 +02:00
Martin Weinelt 8e6075b2ac python3Packages.atom: fix versioning and tests 2022-04-15 01:39:56 +02:00
Martin Weinelt 2dde351eca python3Packages.glean-parser: relax markupsafe constraint 2022-04-15 01:39:56 +02:00
Martin Weinelt f6e6d95100 python3Packages.flask-socketio: 5.0.1 -> 5.1.1 2022-04-15 01:39:56 +02:00
Martin Weinelt 5eb123c365 python3Packages.approvaltests: 4.0.0 -> 5.0.0 2022-04-15 01:39:56 +02:00
Martin Weinelt c0ea8f066e python3Packages.python3-saml: relax lxml constraint 2022-04-15 01:39:56 +02:00
Martin Weinelt 1ccdd9ad73 python3Packages.starlette: 0.18.0 -> 0.19.0 2022-04-15 01:39:56 +02:00
Martin Weinelt 4584d22ba1 python3Packages.azure-core: propagate typing-extensions 2022-04-15 01:39:56 +02:00
Martin Weinelt 04c0a4b7b6 home-assistant-cli: downgrade click to 8.0.4 
https://github.com/home-assistant-ecosystem/home-assistant-cli/issues/382
 2022-04-15 01:39:55 +02:00
Martin Weinelt 95769fb2c8 octoprint: fix eval 
Relying on attributes like these to always be available is prone to an
eval error when the overridden package drops them.
 2022-04-15 01:39:55 +02:00
Martin Weinelt 3d0ccac7fe home-assistant: reduce component tests processes 
Component tests are often of lesser quality, which may lead to spurious
errors when run with high parallelization. Reducing to 4 processes
aligns the setup with what GitHub actions provides, which is what
upstream uses to test.
 2022-04-15 01:39:55 +02:00
Martin Weinelt 2d1e788f60 buku: update sqlalchemy hash 2022-04-15 01:39:55 +02:00
Martin Weinelt 69900853ca mailman: fix build 
Required an update to the sqlalchemy override due to new hash variable
usage. Also disables tests for sqlalchemy and alembic because neither
can find any, so they error out.
 2022-04-15 01:39:55 +02:00
Martin Weinelt e391e40d02 python3Packages.falcon: fix build; cythonize! 2022-04-15 01:39:55 +02:00
Kirill Radzikhovskyy 7f613bbdb6 awsebcli: fixup, downgrade jmespath 2022-04-15 01:39:55 +02:00
Martin Weinelt a484235634 grab-site: update sqlalchemy hash 2022-04-15 01:39:55 +02:00
Martin Weinelt 1828ad603b python3.pkgs.pylint: 2.13.4 -> 2.13.5 
https://github.com/PyCQA/pylint/releases/tag/v2.13.5
 2022-04-15 01:39:55 +02:00
Martin Weinelt abacec3d0b python3Packages.pytest-shutil: fix build 
Propagates six and replaces path.py dependency with path, the new name.
 2022-04-15 01:39:55 +02:00
Martin Weinelt 90112c221f python3Packages.fakeredis: relax redis constraint 2022-04-15 01:39:55 +02:00
Martin Weinelt 1feb33974a python3Packages.mkdocs-material: 8.2.7 -> 8.2.9 2022-04-15 01:39:55 +02:00
Martin Weinelt 3847540f6d python3Packages.mkdocs: 1.2.3 -> 1.3.0 
https://github.com/mkdocs/mkdocs/releases/tag/1.3.0
 2022-04-15 01:39:55 +02:00
Martin Weinelt b4ead6abae python3Packges.pep257: remove together with pytest-pep257 
The code apparently was migrated into pycodestyle.

https://github.com/PyCQA/pydocstyle/issues/580
 2022-04-15 01:39:54 +02:00
Martin Weinelt 5ee7d17afc python3Packages.path: rename from path.py; 12.0.1 -> 16.4.0 
The project had been renamed after 12.5.0 back in 2020, which is why we
didn't receive further updates.

Created an alias and renamed all existing references.
 2022-04-15 01:39:54 +02:00
Martin Weinelt 8aaa019221 python3Packages.twisted: 22.2.0 -> 22.4.0 2022-04-15 01:39:54 +02:00
Robert Schütz d735ed3864 python3Packages.pytest-asyncio: 0.18.1 -> 0.18.3 
https://github.com/pytest-dev/pytest-asyncio/blob/v0.18.3/CHANGELOG.rst
 2022-04-15 01:39:54 +02:00
Robert Schütz bfcb28e128 python3Packages.async_generator: does not depend on pytest-asyncio 2022-04-15 01:39:54 +02:00
Martin Weinelt c2d2758147 borgbackup: disable racy test 
https://github.com/borgbackup/borg/issues/6573
 2022-04-15 01:39:54 +02:00
Martin Weinelt 9f340b5bf1 treewide: remove redundant numprocesses pytest-xdist parameter 
Including the pytest-xdist package automatically configures numprocesses
to $NIX_BUILD_CORES, so specifying these on a package level has become
redundant.
 2022-04-15 01:39:54 +02:00
Martin Weinelt 836e3af544 python3Packages.jax: disable test_custom_linear_solve_aux 
```
______________ CustomLinearSolveTest.test_custom_linear_solve_aux ______________
[gw3] linux -- Python 3.9.11 /nix/store/k1physzalj5vffsvl7ag6h6b6vaqip5x-python3-3.9.11/bin/python3.9

self = <custom_linear_solve_test.CustomLinearSolveTest testMethod=test_custom_linear_solve_aux>

    @jtu.skip_on_flag("jax_skip_slow_tests", True)
    def test_custom_linear_solve_aux(self):
      def explicit_jacobian_solve_aux(matvec, b):
        x = lax.stop_gradient(jnp.linalg.solve(jax.jacobian(matvec)(b), b))
        return x, array_aux

      def matrix_free_solve_aux(matvec, b):
        return lax.custom_linear_solve(
          matvec, b, explicit_jacobian_solve_aux, explicit_jacobian_solve_aux,
          symmetric=True, has_aux=True)

      def linear_solve_aux(a, b):
        return matrix_free_solve_aux(partial(high_precision_dot, a), b)

      # array aux values, to be able to use jtu.check_grads
      array_aux = {"converged": np.array(1.), "nfev": np.array(12345.)}
      rng = self.rng()
      a = rng.randn(3, 3)
      a = a + a.T
      b = rng.randn(3)

      expected = jnp.linalg.solve(a, b)
      actual_nojit, nojit_aux = linear_solve_aux(a, b)
      actual_jit, jit_aux = jax.jit(linear_solve_aux)(a, b)

      self.assertAllClose(expected, actual_nojit)
      self.assertAllClose(expected, actual_jit)
      # scalar dict equality check
      self.assertDictEqual(nojit_aux, array_aux)
      self.assertDictEqual(jit_aux, array_aux)

      # jvp / vjp test
>     jtu.check_grads(linear_solve_aux, (a, b), order=2, rtol=4e-3)

tests/custom_linear_solve_test.py:157:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
jax/_src/test_util.py:372: in check_grads
    _check_grads(f, args, order)
jax/_src/test_util.py:361: in _check_grads
    _check_grads(partial(api.jvp, f), (args, args), order - 1, fwd_msg)
jax/_src/test_util.py:365: in _check_grads
    _check_vjp(f, partial(api.vjp, f), args, err_msg=rev_msg)
jax/_src/test_util.py:325: in check_vjp
    check_close(ip, ip_expected, atol=atol, rtol=rtol,
jax/_src/test_util.py:227: in check_close
    tree_all(tree_multimap(assert_close, xs, ys))
jax/_src/tree_util.py:180: in tree_map
    return treedef.unflatten(f(*xs) for xs in zip(*all_leaves))
jax/_src/tree_util.py:180: in <genexpr>
    return treedef.unflatten(f(*xs) for xs in zip(*all_leaves))
jax/_src/test_util.py:217: in _assert_numpy_close
    _assert_numpy_allclose(a, b, atol=atol * a.size, rtol=rtol * b.size,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

a = array(1.89683694), b = array(1.88698006), atol = 0.002, rtol = 0.004
err_msg = 'VJP of JVP cotangent projection'

    def _assert_numpy_allclose(a, b, atol=None, rtol=None, err_msg=''):
      if a.dtype == b.dtype == _dtypes.float0:
        np.testing.assert_array_equal(a, b, err_msg=err_msg)
        return
      a = a.astype(np.float32) if a.dtype == _dtypes.bfloat16 else a
      b = b.astype(np.float32) if b.dtype == _dtypes.bfloat16 else b
      kw = {}
      if atol: kw["atol"] = atol
      if rtol: kw["rtol"] = rtol
      with np.errstate(invalid='ignore'):
        # TODO(phawkins): surprisingly, assert_allclose sometimes reports invalid
        # value errors. It should not do that.
>       np.testing.assert_allclose(a, b, **kw, err_msg=err_msg)
E       AssertionError:
E       Not equal to tolerance rtol=0.004, atol=0.002
E       VJP of JVP cotangent projection
E       Mismatched elements: 1 / 1 (100%)
E       Max absolute difference: 0.00985688
E       Max relative difference: 0.00522363
E        x: array(1.896837)
E        y: array(1.88698)

jax/_src/test_util.py:187: AssertionError
```
 2022-04-15 01:39:54 +02:00
Sandro Jäckel 84cc0b7449 python310Packages.click: 8.1.1 -> 8.1.2 2022-04-15 01:39:54 +02:00
Sandro Jäckel 6fc914b337 python39Packages.ncclient: 0.6.12 -> 0.6.13 2022-04-15 01:39:54 +02:00
Robert Schütz 406c7d8c3d python3Packages.img2pdf: 0.4.3 -> 0.4.4 
https://gitlab.mister-muffin.de/josch/img2pdf/src/tag/0.4.4/CHANGES.rst
 2022-04-15 01:39:54 +02:00
Robert Schütz 4e23b47f48 python3Packages.pikepdf: disable failing test 2022-04-15 01:39:53 +02:00
Robert Schütz fe31277c3c python3Packages.pillow: 9.0.1 -> 9.1.0 
https://pillow.readthedocs.io/en/stable/releasenotes/9.1.0.html
 2022-04-15 01:39:53 +02:00
Robert Scott 35a6f46d6d python3Packages.fastparquet: 0.7.1 -> 0.8.1 2022-04-15 01:39:53 +02:00
Martin Weinelt d57404ea3d python3Packages.jax: test with limited parallelism 
The tests are prone to getting stuck with high parallelism.
 2022-04-15 01:39:53 +02:00
Robert Scott 214d151733 python3Packages.rich: 12.0.1 -> 12.2.0 2022-04-15 01:39:53 +02:00
Jonathan Ringer ba47e59440 python3Packges.websocket: add missing six dependency 
```
       > Processing ./websocket_client-0.56.0-py2.py3-none-any.whl
       > ERROR: Could not find a version that satisfies the requirement six (from websocket-client) (from versions: none)
       > ERROR: No matching distribution found for six
       >
```
 2022-04-15 01:39:53 +02:00
Martin Weinelt 7fc6852dbf python3Packages.google-cloud-testutils: propagate packaging 2022-04-15 01:39:53 +02:00