Nikolay Amiantov
de171ba0c6
cntk: partially unbreak
...
* Use GCC 7 to unbreak the build;
* Mark CUDA build as broken due to cub incompatibility.
2019-10-05 16:18:20 +03:00
Orivej Desh
3dc70841d3
cbc: 2.10.2 -> 2.10.3
2019-10-04 05:17:48 +00:00
Bruno Bzeznik
1ba3f3f00f
SPAdes: init at 3.13.1 ( #63082 )
2019-10-03 09:18:48 +00:00
R. RyanTM
eca416c469
verilator: 4.016 -> 4.018
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
2019-10-01 21:09:12 -05:00
Sébastien Maret
b444b2e956
gildas: 20190901_a -> 20191001_a
2019-10-01 10:52:50 +02:00
Timo Kaufmann
7a7e9c1b27
Merge pull request #64193 from timokau/sage-8.9
...
sage: 8.8 -> 8.9
2019-09-30 11:13:46 +00:00
Timo Kaufmann
d9176bee70
sage: 8.9.rc1 -> 8.9
2019-09-30 11:10:10 +02:00
Ryan Mulligan
8519cd1aa0
Merge pull request #69735 from r-ryantm/auto-update/picard-tools
...
picard-tools: 2.20.5 -> 2.20.8
2019-09-29 15:44:33 -07:00
R. RyanTM
de95a92384
star: 2.7.1a -> 2.7.2b
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
2019-09-28 21:09:40 -07:00
Emily
b2c482b700
verilog: extend platforms
2019-09-28 16:55:21 -05:00
Vladimír Čunát
fda4a08d4a
Merge branch 'staging-next'
...
There are several security fixes - again, as it consists mainly of the
previously reverted staging-next merge.
2019-09-28 07:43:04 +02:00
R. RyanTM
8c397c2bc2
picard-tools: 2.20.5 -> 2.20.8
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-09-27 18:25:22 -07:00
Aaron Andersen
af5176b430
Merge pull request #63117 from bzizou/macse
...
macse: init at 2.03
2019-09-27 17:26:07 -04:00
Vladimír Čunát
217cf982c7
Merge branch 'master' into staging-next
2019-09-27 22:13:02 +02:00
Marek Mahut
5c116916d6
Merge pull request #69575 from r-ryantm/auto-update/ginac
...
ginac: 1.7.6 -> 1.7.7
2019-09-27 22:04:49 +02:00
Michael Raskin
2213e53fcf
Merge pull request #69477 from r-ryantm/auto-update/clingo
...
clingo: 5.3.0 -> 5.4.0
2019-09-27 10:12:24 +00:00
Timo Kaufmann
6181a20ab2
Merge pull request #69609 from r-ryantm/auto-update/jmol
...
jmol: 14.29.49 -> 14.29.53
2019-09-27 09:22:11 +00:00
Joachim F
ad773d31e2
Merge pull request #69345 from joachifm/feat/split-version
...
Replace uses of splitString for splitting version strings
2019-09-27 06:19:18 +00:00
R. RyanTM
0826d695de
jmol: 14.29.49 -> 14.29.53
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2019-09-26 16:35:12 -07:00
R. RyanTM
b7f156625e
ginac: 1.7.6 -> 1.7.7
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ginac/versions
2019-09-26 12:09:29 -07:00
Timo Kaufmann
4a863fa567
Merge pull request #69519 from r-ryantm/auto-update/eclib
...
eclib: 20190226 -> 20190909
2019-09-26 17:27:41 +00:00
Joachim Fasting
bad07dfac5
tree-wide: replace uses of splitString "." with lib.versions
...
Quoting from the splitString docstring:
NOTE: this function is not performant and should never be used.
This replaces trivial uses of splitString for splitting version
strings with the (potentially builtin) splitVersion.
2019-09-26 17:42:49 +02:00
R. RyanTM
faf9a73e2f
eclib: 20190226 -> 20190909
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eclib/versions
Relevant sage upstream ticket: https://trac.sagemath.org/ticket/28472
2019-09-26 16:41:50 +02:00
R. RyanTM
24db075c5c
eagle: 9.4.2 -> 9.5.0
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
2019-09-26 05:34:41 -07:00
R. RyanTM
7653ff45cb
clp: 1.17.2 -> 1.17.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/clp/versions
2019-09-26 01:49:26 -07:00
Jörg Thalheim
9a1b767a55
treewide: remove empty buildInputs
2019-09-26 09:17:23 +01:00
R. RyanTM
f54eb7f159
clingo: 5.3.0 -> 5.4.0
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/clingo/versions
2019-09-26 01:07:35 -07:00
Dmitry Kalinkin
c455adcc42
Merge branch 'master' into staging-next
...
Fixes eval on darwin after #69072
Resolved conflict in pkgs/tools/security/thc-hydra/default.nix
Basically had to revert a1c0e10564
which
adapts #69210 to master that doesn't yet have
329a88efa7
Tested using maintainers/scripts/eval-release.sh before and after to see
that the fix works
2019-09-25 19:21:46 -04:00
Timo Kaufmann
78741fc409
sage: 8.9.rc0 -> 8.9.rc1
2019-09-25 10:19:04 +02:00
Timo Kaufmann
1797c9c295
sage: 8.9.beta9 -> 8.9.rc0
...
Sage now by default expects the lcalc library to be named Lfunction
(instead of libLfunction). This could be changed by an environment
variable (https://trac.sagemath.org/ticket/28224 ), but various distros
seem to agree on this standard
(https://groups.google.com/forum/#!topic/sage-packaging/xvh55IxHTZg ) so
it's best just to follow it. The old standard was set by sage anyway and
sage is the only consumer of lcalc in nixpkgs.
2019-09-24 17:51:09 +02:00
Kierán Meinhardt
815d940e52
tamarin-prover: mark as broken because upstream is broken
2019-09-24 15:25:43 +02:00
Bruno Bzeznik
e4108becbe
macse: init at 2.03
2019-09-24 08:24:07 +02:00
Vladimír Čunát
eab41878ac
Merge branch 'master' into staging-next
2019-09-24 08:14:34 +02:00
Timo Kaufmann
ba9e5a2785
Merge remote-tracking branch 'upstream/master' into sage-8.9
2019-09-23 23:58:37 +02:00
Timo Kaufmann
995a728684
pynac: 0.7.25 -> 0.7.26
2019-09-23 22:08:23 +02:00
Timo Kaufmann
5aba3be6f9
sage: 8.9.beta8 -> 8.9.beta9
2019-09-23 18:50:59 +02:00
Timo Kaufmann
8593d468ae
Merge remote-tracking branch 'upstream/master' into sage-8.9
2019-09-23 17:11:15 +02:00
Timo Kaufmann
cbe12344ca
sage: add pager to environment
...
Temporary fixup while waiting for an upstream fix.
2019-09-23 15:14:43 +02:00
Vladimír Čunát
22a216849b
Re-Revert "Merge branch 'staging-next'"
...
This reverts commit f8a8fc6c7c
.
2019-09-22 09:38:09 +02:00
Vladimír Čunát
f8a8fc6c7c
Revert "Merge branch 'staging-next'"
...
This reverts commit 41af38f372
, reversing
changes made to f0fec244ca
.
Let's delay this. We have some serious regressions.
2019-09-21 20:05:09 +02:00
Vladimír Čunát
41af38f372
Merge branch 'staging-next'
2019-09-21 13:14:09 +02:00
Matthew Bauer
566796ab13
Merge pull request #69038 from matthewbauer/ncurses5
...
treewide: use libtinfo.so.5 where needed
2019-09-20 23:00:04 -04:00
Bjørn Forsman
5af0d0b5da
kicad: fix build
...
Fix configure time error:
...
ImportError: No module named wx
CMake Error at CMakeModules/FindwxPython.cmake:52 (message):
wxPython/Phoenix does not appear to be installed on the system
Only build tested.
Fixes: f7e28bf5d8
("Split buildPythonPackage into setup hooks")
2019-09-20 08:17:58 +02:00
Will Dietz
6429696f43
libqalculate,qalculate-gtk: 3.3.0 -> 3.4.0
2019-09-18 17:05:59 -05:00
Matthew Bauer
4c85abae94
treewide: use libtinfo.so.5 where needed
...
This was originally added in
https://github.com/NixOS/nixpkgs/pull/21350
best to use this name for clarity.
2019-09-18 13:57:20 -04:00
Vladimír Čunát
fa4a3af5a7
Merge branch 'master' into staging-next
2019-09-16 19:24:52 +02:00
Vincent Laporte
8288301636
coq_8_10: 8.10+β2 → 8.10+β3
2019-09-16 11:41:43 -05:00
Aaron Andersen
063c82fd2f
Merge pull request #68773 from mimame/update/cytoscape-3.7.2
...
cytoscape: 3.7.1 -> 3.7.2
2019-09-15 09:43:11 -04:00
Vladimír Čunát
b6c6e1f9e8
Merge branch 'master' into staging-next
2019-09-15 13:18:54 +02:00
Vladimír Čunát
991c0e1618
treewide: mark packages as buildable on darwin (PR #45364 )
...
vcunat amended the commit a bit; see the PR for details/discussion.
2019-09-15 10:50:08 +02:00
Miguel Madrid Mencía
148c82e07e
maintainer: mimadrid: update github username and personal data
2019-09-14 12:15:46 +02:00
Miguel Madrid Mencía
40b760e07c
cytoscape: 3.7.1 -> 3.7.2
2019-09-14 10:52:46 +02:00
Linus Heckemann
f6182da2c6
ants: use itk 4.x
2019-09-13 11:54:21 +02:00
Jan Tojnar
9b6789de73
tree-wide: replace wrapProgram with wrapGApp
...
where appropriate
2019-09-10 17:54:57 +02:00
Izorkin
329a88efa7
treewide: replace mysql.connector-c to libmysqlclient
2019-09-09 15:55:34 +03:00
volth
7b8fb5c06c
treewide: remove redundant quotes
2019-09-08 23:38:31 +00:00
Frederik Rietdijk
5f4734b1dd
Merge remote-tracking branch 'upstream/gcc-8' into staging-next
...
Earlier the gcc8 branch was merged instead of the gcc-8 branch (note the dash)...
2019-09-08 20:44:26 +02:00
Michael Raskin
4149a662a7
petrinizer: fix build by pinning the neccessary library versions
2019-09-07 13:33:50 +03:00
Frederik Rietdijk
66bc7fc1b3
Merge master into staging-next
2019-09-06 22:46:05 +02:00
Justin Bedo
6beabe7d2c
bedtools: 2.28.0 -> 2.29.0
2019-09-06 21:23:15 +02:00
Dmitry Kalinkin
d6264f9094
Merge pull request #65726 from smaret/gildas-20190801_a
...
gildas: 20190701_a -> 20190901_a
2019-09-06 11:15:45 -04:00
Jan Tojnar
cdf426488b
Merge branch 'master' into staging-next
...
Fixed trivial conflicts caused by removing rec.
2019-09-06 03:20:09 +02:00
Jan Tojnar
ed54a5b51d
Merge branch 'gtk-no-plus'
2019-09-06 02:57:51 +02:00
Jan Tojnar
72e7d569a7
tree-wide: s/GTK+/GTK/g
...
GTK was renamed.
2019-09-06 02:54:53 +02:00
Aaron Andersen
11de7aa609
Merge pull request #64322 from jbedo/xenomapper
...
xenomapper: init 1.0.2
2019-09-05 12:08:10 -04:00
Justin Bedo
3f83cbf538
xenomapper: init 1.0.2
2019-09-05 20:50:22 +10:00
Sébastien Maret
4f3eacc2bf
gildas: 20190701_a -> 20190901_a
2019-09-05 12:30:46 +02:00
Vladimír Čunát
4aad2947f8
Merge branch 'master' into staging-next
2019-09-04 11:00:56 +02:00
Franz Pletz
de85797565
Merge remote-tracking branch 'origin/master' into gcc-8
2019-09-03 22:15:07 +02:00
worldofpeace
59e68d3b74
treewide: don't use single quotes with placeholder
2019-09-03 13:01:42 -04:00
Timo Kaufmann
84578046aa
sage: 8.9.beta7 -> 8.9.beta8
2019-09-03 15:34:28 +02:00
Ryan Mulligan
32f9c619f5
Merge pull request #67969 from petabyteboy/feature/remove-dobuild
...
treewide: remove uses of doBuild and doConfigure
2019-09-02 15:13:47 -07:00
Milan Pässler (work)
185fd61631
treewide: remove uses of doBuild and doConfigure
...
doBuild and doConfigure are not actually used by any builders, they were
probably added by mistake and just confuse people.
2019-09-02 23:42:12 +02:00
Vladimír Čunát
f21211ebfe
Merge branch 'master' into staging
2019-09-02 23:25:24 +02:00
Emily
d1dfaa79e3
symbiyosys: fix path to bash (again)
...
/usr/bin/env works on NixOS normally, but previously sby would fail if
used from inside the Nix sandbox.
2019-09-01 14:22:49 -05:00
Tadeo Kondrak
2aa9b655f4
kallisto: 0.43.1 -> 0.46.0
2019-08-31 14:06:31 -06:00
Frederik Rietdijk
98ef78326d
Merge staging-next into staging
2019-08-31 18:07:33 +02:00
Frederik Rietdijk
96e5474329
Merge master into staging-next
2019-08-31 18:04:31 +02:00
Alyssa Ross
1da1a7a479
pari: 2.11.1 -> 2.11.2
2019-08-31 13:33:00 +00:00
Niklas Hambüchen
9e78f76ade
treewide: Remove unnecessary --disable-static
( #66759 )
...
* freetype: Remove unnecessary `--disable-static`.
The true-by-default `dontDisableStatic` already takes care of it.
Fixes freetype not being overridable to have static libs.
* treewide: Remove unnecessary `--disable-static`.
The true-by-default `dontDisableStatic` already takes care of it.
Fixes these packages not being overridable to have static libs.
2019-08-31 08:10:53 -04:00
Alexander
35ac3344e7
colmap: init at 3.5 ( #67759 )
...
* colmap: init at 3.5
2019-08-31 08:06:46 -04:00
volth
7bb6b373ab
treewide: name -> pname ( #67513 )
2019-08-31 07:41:22 -04:00
Lassulus
a8d26fc34a
Merge pull request #63127 from bzizou/trimal
...
trimal: init at 1.4.1
2019-08-31 13:04:41 +02:00
Frederik Rietdijk
ad1d58c622
Merge staging-next into staging
2019-08-31 10:04:20 +02:00
Frederik Rietdijk
fc74ba8291
Merge master into staging-next
2019-08-31 09:50:38 +02:00
volth
08f68313a4
treewide: remove redundant rec
2019-08-28 11:07:32 +00:00
Frederik Rietdijk
5061fe0c2c
Merge staging-next into staging
2019-08-28 08:26:42 +02:00
Léo Gaspard
8a4721d606
Merge pull request #64669 from luispedro/add_sortmerna
...
sortmerna: init at 3.0.3
2019-08-27 17:19:53 +02:00
Frederik Rietdijk
98640fd482
Merge master into staging-next
2019-08-27 16:36:47 +02:00
Luis Pedro Coelho
bc22c2e07f
sortmerna: init at 3.0.3
...
This is a useful package in bioinformatics, namely in processing
short-read sequencing data from metagenomes
2019-08-27 00:37:43 +02:00
volth
35d68ef143
treewide: remove redundant quotes
2019-08-26 21:40:19 +00:00
Jonathan Ringer
6f279584fd
stp: 2.2.0 -> 2.3.3
2019-08-26 14:00:48 -07:00
Robin Gloster
616b8343c4
Merge remote-tracking branch 'upstream/master' into gcc-8
2019-08-25 18:55:46 +02:00
Vladimír Čunát
985d1ac425
Merge branch 'master' into staging-next
...
There were several more conflicts from name -> pname+version;
all auto-solved by kdiff3, hopefully OK.
Hydra nixpkgs: ?compare=1538611
2019-08-25 14:57:11 +02:00
Gabriel Ebner
440c63a38a
vampire: 4.2.2 -> 4.4
2019-08-25 14:43:51 +02:00
Nikolay Amiantov
9015d7a4f1
sumorobot-manager: init at 0.9.0
2019-08-24 19:11:27 +03:00
Vladimír Čunát
2e6bf42a22
Merge branch 'master' into staging-next
...
There ver very many conflicts, basically all due to
name -> pname+version. Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job. There might be some fallback to these
conflicts, but I believe it should be minimal.
Hydra nixpkgs: ?compare=1538299
2019-08-24 08:55:37 +02:00
Emily
05c54717f8
symbiyosys: extend platforms
2019-08-23 02:14:40 -05:00
Marek Mahut
44d43368cb
Merge pull request #67155 from r-ryantm/auto-update/tulip
...
tulip: 5.1.0 -> 5.2.1
2019-08-21 21:40:06 +02:00
R. RyanTM
187ec1a8c6
tulip: 5.1.0 -> 5.2.1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/tulip/versions
2019-08-20 19:45:43 -07:00