Frederik Rietdijk
6f723b9bad
Merge master into staging-next
2019-08-02 09:18:37 +02:00
Robin Gloster
c6f1c9044b
Merge pull request #63282 from jbedo/strelka
...
strelka: 2.9.5 -> 2.9.10
2019-08-01 23:44:58 +00:00
Timo Kaufmann
b884552c35
sage: 8.9.beta2 -> 8.9.beta3
2019-08-02 01:03:33 +02:00
Orivej Desh
32fbbc6f9b
Merge master into staging
2019-07-25 09:23:21 +00:00
Orivej Desh
b5d1d50aa9
google-gflags: move to aliases.nix
...
google-gflags were renamed to gflags in 2012:
https://github.com/gflags/gflags/#25-january-2012
gflags.name will be updated in staging.
2019-07-25 09:18:32 +00:00
R. RyanTM
a47962010d
cryptoverif: 2.01 -> 2.01pl1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cryptoverif/versions
2019-07-23 19:32:45 -05:00
Guanpeng Xu
6988b0b929
mathematica: 11.3.0 -> 12.0.0 ( #65031 )
...
* mathematica: archive version 11
* mathematica: 11.3.0 -> 12.0.0
2019-07-23 22:23:00 +02:00
worldofpeace
b1bc0645ea
gdk-pixbuf: rename from gdk_pixbuf
2019-07-22 18:50:57 -04:00
lewo
481bb449a2
Merge pull request #64897 from bzizou/est-sfs
...
est-sfs: init at 2.03
2019-07-22 22:52:16 +02:00
Robin Gloster
dbfcfe495e
Merge pull request #65183 from r-ryantm/auto-update/scilab-bin
...
scilab-bin: 6.0.1 -> 6.0.2
2019-07-22 17:49:05 +00:00
R. RyanTM
7251e3a2af
scilab-bin: 6.0.1 -> 6.0.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/scilab-bin/versions
2019-07-20 09:33:18 -07:00
Justin Bedo
11ed86d873
bedtools: 2.27.1 -> 2.28.0
2019-07-20 14:15:38 +02:00
avitex
44324bdd7c
caffe: add python package requirements
2019-07-20 13:17:17 +02:00
avitex
955ed925e5
caffe: fix python build
2019-07-20 13:17:17 +02:00
R. RyanTM
9a6f0ca8b7
stacks: 2.4 -> 2.41
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/stacks/versions
2019-07-17 09:34:10 +02:00
Ryan Mulligan
e7920cbcfc
Merge pull request #64862 from r-ryantm/auto-update/picard-tools
...
picard-tools: 2.20.2 -> 2.20.3
2019-07-16 20:04:43 -07:00
Bruno Bzeznik
9a22c8c697
est-sfs: init at 2.03
2019-07-16 13:55:59 +02:00
Frederik Rietdijk
a28a9ac156
Merge master into staging-next
2019-07-16 11:15:46 +02:00
R. RyanTM
b7fc14d8e6
picard-tools: 2.20.2 -> 2.20.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-07-15 21:46:51 -07:00
Frederik Rietdijk
800da69c8a
Merge pull request #64551 from jonringer/update-pyproj
...
proj: 5.2.0 -> 6.1.1
2019-07-15 21:14:04 +02:00
Ryan Mulligan
6e03fdd341
Merge pull request #64811 from r-ryantm/auto-update/gp2c
...
gp2c: 0.0.11pl1 -> 0.0.11pl2
2019-07-15 11:30:01 -05:00
R. RyanTM
3ef3712313
gp2c: 0.0.11pl1 -> 0.0.11pl2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gp2c/versions
2019-07-15 08:14:30 -07:00
Vladimír Čunát
3686036e02
Merge branch 'master' into staging-next
...
Hydra nixpkgs: ?compare=1530372
2019-07-15 09:39:03 +02:00
Jonathan Ringer
e6223c022b
openspace: mark as broken
...
Fails to build with GL error
2019-07-14 09:59:31 -07:00
Théo Zimmermann
3bc04b576a
coq: 8.10+beta1 -> 8.10+beta2
2019-07-14 14:58:49 +00:00
worldofpeace
7ce0cc0a6a
Merge pull request #64324 from jbedo/hisat2
...
hisat2: fix missing perl dependency
2019-07-13 13:21:11 -04:00
Frederik Rietdijk
54065ae20d
Merge master into staging-next
2019-07-13 09:45:40 +02:00
Daniël de Kok
3a4ba91b4a
fasttext: 0.2.0 -> 0.9.1
...
Changes:
- Refactoring of internal classes.
- Better unicode handling.
https://github.com/facebookresearch/fastText/releases/tag/v0.9.1
2019-07-12 02:13:23 +02:00
Timo Kaufmann
56bd506e42
sage: 8.9.beta0 -> 8.9.beta2
2019-07-11 19:42:01 +02:00
Frederik Rietdijk
22cb7f25f2
Merge master into staging-next
2019-07-11 09:40:10 +02:00
Ryan Mulligan
508ae42a0f
treewide: fix redirect URLs
2019-07-10 12:52:51 -07:00
Frederik Rietdijk
79a03641d5
Merge staging-next into staging
2019-07-09 15:46:26 +02:00
Frederik Rietdijk
74c24385cb
Merge master into staging-next
2019-07-09 15:46:00 +02:00
Frederik Rietdijk
7cf5909fad
Merge staging-next into staging
2019-07-09 15:44:08 +02:00
Millian Poquet
0513ae77ff
simgrid: 3.22.2 -> 3.23
2019-07-08 14:00:14 +02:00
Vladimír Čunát
0746c4dbb4
Merge branch 'master' into staging-next
...
There are several thousand rebuilds from master already.
Hydra nixpkgs: ?compare=1528940
2019-07-06 13:44:40 +02:00
Thomas Tuegel
56d5963382
Merge pull request #54525 from ttuegel/feature/qt-5/wrap-qt-apps
...
Wrap Qt applications
2019-07-05 14:38:10 -05:00
Thomas Tuegel
51d78034a1
wrapQtAppsHook: Remove ad hoc Qt wrappers
2019-07-05 10:42:08 -05:00
Peter Simons
ec662c5654
R: 3.6.0 -> 3.6.1
2019-07-05 09:05:22 +00:00
Justin Bedo
d2d449cea5
hisat2: fix missing perl dependency
2019-07-05 10:29:51 +10:00
markuskowa
8f34a8c368
Merge pull request #64291 from angus-g/gmsh-4.4.0
...
gmsh: 4.3.0 -> 4.4.0
2019-07-04 22:17:46 +02:00
Angus Gibson
8c26b71dc8
gmsh: 4.3.0 -> 4.4.0
2019-07-04 19:21:54 +10:00
Dmitry Kalinkin
3ff069d029
Merge pull request #64120 from smaret/gildas-201907a
...
gildas: 20190601_b -> 20190701_a
2019-07-03 17:28:54 -04:00
Daiderd Jordan
da7bcec42f
root: remove cf-private
2019-07-03 22:20:22 +02:00
Frederik Rietdijk
25a77b7210
Merge staging-next into staging
2019-07-03 08:59:42 +02:00
R. RyanTM
4bf65cf0fa
verilator: 4.014 -> 4.016
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
2019-07-03 08:30:01 +02:00
Timo Kaufmann
924c321e8a
sage: 8.8 -> 8.9.beta0
2019-07-02 23:02:36 +02:00
Sébastien Maret
08ee08435e
gildas: 20190601_b -> 20190701_a
2019-07-02 11:04:40 +02:00
R. RyanTM
526f12b886
gap: 4.10.1 -> 4.10.2 ( #64026 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gap/versions
2019-07-01 20:06:42 +02:00
worldofpeace
3f4a353737
treewide: use dontUnpack
2019-07-01 04:23:51 -04:00
Maximilian Bosch
1b019ba91d
stellarium: 0.19.0 -> 0.19.1
...
https://github.com/Stellarium/stellarium/releases/tag/v0.19.1
2019-06-28 23:24:11 +02:00
Timo Kaufmann
66fa457ba1
Merge pull request #59989 from timokau/sage-8.8
...
sage: 8.7 -> 8.8
2019-06-27 23:30:12 +02:00
Timo Kaufmann
5b2db39c49
sage: 8.8.rc2 -> 8.8
2019-06-27 22:05:30 +02:00
Timo Kaufmann
e7d4386e0e
sage: 8.8.rc1 -> 8.8.rc2
2019-06-27 22:03:00 +02:00
Timo Kaufmann
218fd843a3
sage: 8.8.rc0 -> 8.8.rc1
2019-06-27 22:03:00 +02:00
Timo Kaufmann
409bee28b6
sage: 8.8.beta7 -> 8.8.rc0
2019-06-27 22:03:00 +02:00
Timo Kaufmann
c76e8fa86e
sage: 8.8.beta6 -> 8.8.beta7
2019-06-27 22:02:57 +02:00
Timo Kaufmann
9f434d7080
sage: 8.8.beta5 -> 8.8.beta6
2019-06-27 22:01:40 +02:00
Timo Kaufmann
325a5037bf
sage: 8.8.beta4 -> 8.8.beta5
2019-06-27 22:01:37 +02:00
Timo Kaufmann
240d4c31d2
sage: 8.8.beta3 -> 8.8.beta4
2019-06-27 21:57:33 +02:00
Timo Kaufmann
608948e3e9
sage: 8.8.beta2 -> 8.8.beta3
2019-06-27 21:57:33 +02:00
Timo Kaufmann
21c1ab6776
sage: 8.7 -> 8.8.beta2
2019-06-27 21:57:27 +02:00
markuskowa
a07d045b00
Merge pull request #63488 from jbedo/octopus
...
octopus: init 0.6.3-beta
2019-06-27 12:43:25 +02:00
Dmitry Kalinkin
bff22431b5
Merge pull request #62845 from royneary/nim-0.20.0
...
nim: 0.19.4 -> 0.20.0
2019-06-26 13:00:50 -04:00
Nikolay Amiantov
3dd7d72e43
fast-downward: init at 2019-05-13
2019-06-24 15:59:57 +03:00
Nikolay Amiantov
a92611508f
cplex: add library info
2019-06-24 15:57:22 +03:00
Nikolay Amiantov
10e1475a79
gurobi: add library suffix
2019-06-24 15:57:22 +03:00
R. RyanTM
3e6ef3e9ef
eagle: 9.3.2 -> 9.4.1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
2019-06-23 14:57:04 +02:00
royneary
d162165350
mosdepth: 0.2.3 -> 0.2.6
2019-06-22 22:41:59 +02:00
Timo Kaufmann
ac28607a03
Merge pull request #63560 from timokau/sage-threejs-r105
...
sage: fix threejs r105
2019-06-20 14:55:13 +02:00
markuskowa
3947441cb9
Merge pull request #63262 from r-ryantm/auto-update/gromacs
...
gromacs: 2019.2 -> 2019.3
2019-06-20 14:26:02 +02:00
Timo Kaufmann
9955657209
sage: fix online threejs
2019-06-20 12:50:00 +02:00
Timo Kaufmann
2d78d928cd
sage: backport threejs r100 compatibility
...
https://github.com/NixOS/nixpkgs/issues/62736#issuecomment-503757429
2019-06-20 12:50:00 +02:00
Justin Bedo
b8b71aaaf9
octopus: init 0.6.3-beta
2019-06-19 23:09:33 +10:00
Linus Heckemann
32a992af8b
Merge pull request #63479 from lheckemann/dcm2niix
...
dcm2niix: 1.0.20170130 -> 1.0.20190410
2019-06-19 12:05:37 +02:00
Vincent Laporte
1f2a3a2df2
gappa: 1.2 -> 1.3.5
2019-06-19 09:24:34 +00:00
Linus Heckemann
2458209c3e
dcm2niix: 1.0.20170130 -> 1.0.20190410
2019-06-18 22:12:40 +02:00
Timo Kaufmann
6e74109b13
sage: fix threejs integration ( #63375 )
...
Before this it didn't find the correct files. Unfortunately, the
interactive parts of sage are hard to test automatically.
2019-06-18 11:50:41 +02:00
R. RyanTM
3775ef0acd
jmol: 14.29.42 -> 14.29.46 ( #63277 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2019-06-17 20:56:11 +02:00
Justin Bedo
1be8ba08d3
strelka: 2.9.5 -> 2.9.10
2019-06-17 16:09:25 +10:00
Franz Pletz
394bee72db
ants: fix build with gcc8
2019-06-17 07:26:00 +02:00
R. RyanTM
0c54098340
gromacs: 2019.2 -> 2019.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
2019-06-16 18:22:05 -07:00
volth
f3282c8d1e
treewide: remove unused variables ( #63177 )
...
* treewide: remove unused variables
* making ofborg happy
2019-06-16 19:59:05 +00:00
Bruno Bzeznik
aafffb2614
trimal: init at 1.4.1
2019-06-14 16:31:39 +02:00
Aaron Andersen
4cb64dba39
Merge pull request #58362 from bzizou/cd-hit
...
cd-hit: init at 4.8.1
2019-06-13 20:39:54 -04:00
Bruno Bzeznik
9fbf8625f1
cd-hit: init at 4.8.1
2019-06-13 14:35:13 +02:00
markuskowa
ca099915f7
Merge pull request #62976 from markuskowa/upd-octopus
...
octopus: 8.4 -> 9.0
2019-06-12 09:36:42 +02:00
Markus Kowalewski
4df1e91b31
octopus: 8.4 -> 9.0
2019-06-11 13:02:54 +02:00
Will Dietz
e397f4716c
z3: 4.8.4 -> 4.8.5
...
* drop included patch
* pname-ify
2019-06-10 17:55:26 -07:00
Will Dietz
94774dad00
pulseview: 0.4.0 -> 0.4.1
...
https://sigrok.org/gitweb/?p=pulseview.git;a=blob;f=NEWS;h=69c7ac5d418bbae896906b8c6b64c6719b1912db;hb=05a4de8abd5810cf8219077259ffa44adb08043e
2019-06-10 23:20:24 +02:00
Robert Scott
48c8756157
pythonPackages.neuron: restrict to x86 platforms
2019-06-09 12:18:58 +02:00
Robert Scott
e0aec554eb
pythonPackages.neuron: fix for darwin
...
un-compensate for some of the darwin quirks the neuron
source is expecting
2019-06-09 12:18:58 +02:00
R. RyanTM
5bbc9be100
gmsh: 4.2.3 -> 4.3.0 ( #62420 )
...
* gmsh: 4.2.3 -> 4.3.0
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
* gmsh: move cmake to nativeBuildInputs
2019-06-07 18:01:57 +02:00
R. RyanTM
8ebf0eefbe
star: 2.7.0f -> 2.7.1a ( #62577 )
...
* star: 2.7.0f -> 2.7.1a
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
* star: cleanup
2019-06-06 18:10:34 +02:00
Matthew Bauer
d598eca41e
Merge pull request #62752 from matthewbauer/darwin-fixes100
...
Fixes for x86_64-darwin failures on Hydra
2019-06-06 09:46:41 -04:00
Matthew Bauer
441485af66
iv: only use patchelf on linux
2019-06-05 23:42:58 -04:00
Matthew Bauer
693a4efa4c
Merge pull request #53013 from wucke13/betaflight-configurator-naive
...
betaflight-configurator: init at 10.5.1
2019-06-05 10:08:29 -04:00
worldofpeace
1d66d62bbc
Merge pull request #62430 from r-ryantm/auto-update/gtkwave
...
gtkwave: 3.3.100 -> 3.3.101
2019-06-04 23:12:58 -04:00
Renaud
e7e1ae542c
Merge pull request #62499 from r-ryantm/auto-update/picard-tools
...
picard-tools: 2.19.2 -> 2.20.2
2019-06-05 00:05:59 +02:00
R. RyanTM
df3cdc29be
quantum-espresso: 6.4 -> 6.4.1 ( #62556 )
2019-06-04 19:24:04 +00:00
Sébastien Maret
39a3ad3dce
gildas: 20190501_a -> 20190601_b
2019-06-03 21:07:00 +02:00
Nikolay Amiantov
1deb406ac2
mxnet: 1.2.1 -> 1.4.1
2019-06-02 21:50:06 +03:00
Nikolay Amiantov
1260b05279
cntk: 2.4 -> 2.7
...
Restrict platforms to x86_64-linux.
2019-06-02 19:40:49 +03:00
R. RyanTM
2998ac28b4
picard-tools: 2.19.2 -> 2.20.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-06-02 05:31:59 -07:00
markuskowa
5e45835011
Merge pull request #62448 from r-ryantm/auto-update/jmol
...
jmol: 14.29.40 -> 14.29.42
2019-06-02 11:46:45 +02:00
R. RyanTM
e20c69619f
jmol: 14.29.40 -> 14.29.42
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2019-06-01 17:19:25 -07:00
R. RyanTM
62e667f6ab
gtkwave: 3.3.100 -> 3.3.101
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
2019-06-01 13:31:03 -07:00
worldofpeace
b33513d237
Merge pull request #62378 from r-ryantm/auto-update/clp
...
clp: 1.17.1 -> 1.17.2
2019-06-01 12:10:36 -04:00
worldofpeace
62c68b8a72
clp: update homepage
2019-06-01 12:08:20 -04:00
R. RyanTM
6f2d2818b0
cryptoverif: 2.00 -> 2.01
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cryptoverif/versions
2019-06-01 10:51:25 -05:00
Alyssa Ross
062210bdff
treewide: update cargoSha256 hashes for cargo-vendor upgrade
...
A recent upgrade of cargo-vendor changed its output slightly, which
broke all cargoSha256 hashes in nixpkgs.
See https://github.com/NixOS/nixpkgs/issues/60668 for more information.
Since then, a few hashes have been fixed in master by hand, but there
were a lot still to do, so I did all of the ones left over with some
scripts I wrote.
The one hash I wasn’t able to update was habitat's, because it’s
currently broken and the build doesn’t get far enough to produce a
hash anyway.
2019-06-01 15:17:52 +00:00
R. RyanTM
332c600f7d
clp: 1.17.1 -> 1.17.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/clp/versions
2019-06-01 04:05:51 -07:00
wucke13
fd121cdd88
Added makeWrapper suggestion
2019-05-31 12:51:51 +02:00
wucke13
db3a1d8adb
Update pkgs/applications/science/robotics/betaflight-configurator/default.nix
...
Co-Authored-By: Paul TREHIOU <paul@nyanlout.re>
2019-05-31 12:51:51 +02:00
wucke13
5fcf9f5559
Update pkgs/applications/science/robotics/betaflight-configurator/default.nix
...
Co-Authored-By: Paul TREHIOU <paul@nyanlout.re>
2019-05-31 12:51:51 +02:00
wucke13
170009b123
betaflight-configurator: init at 10.5.1
2019-05-31 12:51:51 +02:00
Vincent Laporte
57c3da07eb
coq_8_9: 8.9.0 -> 8.9.1
2019-05-29 11:24:45 +02:00
Will Dietz
368f870219
libqalculate,qalculate-gtk: 3.1.0 -> 3.2.0
2019-05-28 19:14:03 -05:00
Jörg Thalheim
10ddd34921
verilator: 4.012 -> 4.014 ( #62013 )
...
verilator: 4.012 -> 4.014
2019-05-25 09:16:58 +01:00
Dmitry Kalinkin
785204f5a1
Merge pull request #61895 from smaret/gildas-update
...
gildas: 20190401_a -> 20190501_a
2019-05-24 17:48:25 -04:00
R. RyanTM
66b4fd678c
verilator: 4.012 -> 4.014
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
2019-05-24 09:19:04 -07:00
Renaud
70a494a486
Merge pull request #61798 from bobvanderlinden/aliza-1.48.10
...
aliza: 1.36.3 -> 1.48.10
2019-05-24 17:23:51 +02:00
Ryan Mulligan
34e8f3b119
Merge pull request #61997 from r-ryantm/auto-update/stacks
...
stacks: 2.3e -> 2.4
2019-05-24 06:31:43 -07:00
R. RyanTM
f4a20199d2
stacks: 2.3e -> 2.4
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/stacks/versions
2019-05-24 03:50:06 -07:00
Sébastien Maret
cadd88967f
gildas: 20190401_a -> 20190501_a
2019-05-24 08:11:21 +02:00
Gabriel Ebner
cca0aeeb68
spyder: convert to python modules
2019-05-21 18:23:07 +02:00
Bob van der Linden
c8571f6a2c
aliza: ? -> 1.48.10
2019-05-21 11:31:38 +02:00
Cyril Cohen
d16a78b512
several fixes in coq and coqPackages.mathcomp (and extras)
2019-05-21 08:55:38 +02:00
markuskowa
82ea400e46
Merge pull request #61630 from markuskowa/upd-molden
...
molden: 5.9.5 -> 6.1
2019-05-18 20:13:57 +02:00
Robin Gloster
43aa2e30c3
Merge pull request #58369 from bzizou/clustalo
...
clustal-omega: init at 1.2.4
2019-05-18 10:16:43 +00:00
Robin Gloster
6cf583cf2f
Merge pull request #60406 from JohnAZoidberg/remove-isnull
...
treewide: Remove usage of isNull
2019-05-18 09:36:24 +00:00
Markus Kowalewski
dce18eefd1
molden: 5.9.5 -> 6.1
2019-05-17 13:07:53 +02:00
Aaron Andersen
8b3350cf15
Merge pull request #61462 from mpoquet/simgrid-3.21-to-3.22.2
...
simgrid: 3.21 -> 3.22.2
2019-05-16 12:04:44 -04:00
Will Dietz
51202e96fa
nasc: 0.5.2 -> 0.5.4
...
https://github.com/parnold-x/nasc/releases/tag/0.5.4
https://github.com/parnold-x/nasc/releases/tag/0.5.3
2019-05-15 16:59:26 -05:00
Millian Poquet
13aa449bab
simgrid: remove unneeded 'name' definition
2019-05-15 12:35:12 +02:00
Vincent Laporte
b72daf7117
coq: init at 8.10+β1
2019-05-15 10:30:03 +02:00
Vincent Laporte
1ce94fad33
coq: make “coq-version” more general
2019-05-15 10:30:03 +02:00
Millian Poquet
00fc5bd08f
simgrid: override checkPhase -> preCheck
...
This commit changes how failing tests are ignored.
- Previously, the whole checkPhase was overridden.
- Now, preCheck generates a ctest ignore file.
ctest doc: https://gitlab.kitware.com/cmake/community/wikis/doc/ctest/Testing-With-CTest#customizing-ctest
2019-05-14 18:27:51 +02:00
Millian Poquet
aa29b79e8a
simgrid: fetchgit -> fetchFromGitLab
2019-05-13 21:26:09 +02:00
Millian Poquet
c7ab2b9499
simgrid: 3.21 -> 3.22.2
...
- GitHub -> Framagit (SimGrid main repo has moved)
- Test binaries must now be explicitly compiled (`make tests`)
- Fix broken documentation link
2019-05-13 18:58:27 +02:00
Timo Kaufmann
ecfc35e9a6
pynac: 0.7.24 -> 0.7.25 ( #61458 )
2019-05-13 17:11:13 +02:00
Renaud
bf4728cb40
eggnog-mapper: fix patch URL and hash
2019-05-13 16:00:07 +02:00
R. RyanTM
af6a39460a
cbc: 2.9.9 -> 2.10.2 ( #58016 )
...
* cbc: 2.9.9 -> 2.10.0
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cbc/versions
* cbc: 2.10.0 -> 2.10.2
+ mark as broken on aarch64 (fails to build)
2019-05-12 23:46:18 +02:00
Sebastien Bourdeauducq
992150d37b
symbiyosys: fix path to bash
2019-05-12 20:00:10 +02:00
Renaud
d081baa4a5
Merge pull request #61335 from r-ryantm/auto-update/minimap2
...
minimap2: 2.16 -> 2.17
2019-05-12 17:27:28 +02:00
R. RyanTM
ad5676f8b9
minimap2: 2.16 -> 2.17
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/minimap2/versions
2019-05-11 21:12:42 -07:00
wucke13
a670a8dbb1
apmplanner-2: 2.0.26 -> 2.0.27-rc1
2019-05-11 19:15:10 +02:00
Timo Kaufmann
3814d7b14a
givaro: 4.0.4 -> 4.1.0, fflas-ffpack: 2.3.2 -> 2.4.0, linbox: 1.5.2 -> 1.6.0 ( #61285 )
...
The three packages are interdependent and need to be updated together,
like the main contributor did for sage:
https://trac.sagemath.org/ticket/24214
2019-05-11 16:09:07 +02:00
Michael Raskin
7252364dfa
tptp: switch to new base URL for source tarball
2019-05-09 22:57:59 +02:00
Michael Raskin
a8c4b37063
vampire: switch off the fragile fetchSubmodules/leaveDotGit
2019-05-09 22:57:59 +02:00
Renaud
2fb1b3156f
Merge pull request #60932 from c0bw3b/patches-cleanup
...
[treewide] delete (some) unused patches
2019-05-07 23:34:04 +02:00
Frederik Rietdijk
a80982b4c9
Merge staging-next into master
2019-05-07 19:29:06 +02:00
Frederik Rietdijk
0196d8f11c
Merge master into staging-next
2019-05-07 09:00:06 +02:00
Mario Rodas
e47dd1bb34
cedille: fix hash
2019-05-05 20:47:29 -05:00
Michael Raskin
7770495cd7
Merge pull request #59148 from volth/gcc.arch.v3
...
compilation for particular x86_64 architecture
2019-05-05 19:12:12 +00:00
Daniël de Kok
f029f8c5ad
fasttext: init at 0.2.0
2019-05-05 08:28:44 +02:00
c0bw3b
9cb260d091
[treewide] delete unused patches
2019-05-04 19:52:24 +02:00
Frederik Rietdijk
155c9d8e18
Merge master into staging-next
2019-05-02 08:43:14 +02:00
Renaud
2f76c9b7e8
Merge pull request #60694 from r-ryantm/auto-update/picard-tools
...
picard-tools: 2.19.0 -> 2.19.2
2019-05-02 08:06:35 +02:00
R. RyanTM
d41da19c65
picard-tools: 2.19.0 -> 2.19.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-05-01 17:49:08 -07:00
Gabriel Ebner
ebbeae56bd
kicad: 5.0.2 -> 5.1.2 ( #60611 )
...
kicad: 5.0.2 -> 5.1.2
2019-05-01 12:21:02 +02:00
Frederik Rietdijk
f137783927
Merge master into staging-next
2019-05-01 11:45:46 +02:00
R. RyanTM
cc82f81d9a
bowtie2: 2.3.5 -> 2.3.5.1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bowtie2/versions
2019-05-01 11:17:16 +02:00
R. RyanTM
dbfdaf048a
gromacs: 2019.1 -> 2019.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
2019-05-01 11:14:16 +02:00
Gabriel Ebner
9370c1afdb
kicad: 5.0.2 -> 5.1.2
2019-05-01 11:13:14 +02:00
R. RyanTM
06aa3d6f60
jmol: 14.29.36 -> 14.29.40
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2019-05-01 11:10:18 +02:00
Gabriel Ebner
e62576817f
Merge branch 'auto-update/libqalculate'
2019-05-01 10:28:38 +02:00
Gabriel Ebner
1d5a0ffbfc
qalculate-gtk: 3.0.0 -> 3.1.0
2019-05-01 10:28:04 +02:00
Ryan Mulligan
14965968bd
Merge pull request #60550 from r-ryantm/auto-update/ginac
...
ginac: 1.7.5 -> 1.7.6
2019-04-30 19:27:22 -07:00
R. RyanTM
1d663a6b2e
ginac: 1.7.5 -> 1.7.6
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ginac/versions
2019-04-30 15:56:23 -07:00
Michael Raskin
9d807a768a
Merge pull request #60520 from r-ryantm/auto-update/eprover
...
eprover: 2.2 -> 2.3
2019-04-30 19:16:59 +00:00
R. RyanTM
62cd9ccca4
eprover: 2.2 -> 2.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eprover/versions
2019-04-30 10:05:27 -07:00
Gabriel Ebner
a35df16d5f
kicad: fix #49089 by adding libraries files ( #57452 )
...
kicad: fix #49089 by adding libraries files
2019-04-30 17:38:16 +02:00
volth
5ad79dc4bb
compilation for particular x86_64 architecture
2019-04-30 14:28:04 +00:00
Matthew Bauer
a3990c9f6d
Merge pull request #60447 from matthewbauer/macos-10-12-fixups
...
Fixup from macos-10-12 branch
2019-04-30 10:06:45 -04:00
Frederik Rietdijk
3462fe27d9
Merge staging-next into staging
2019-04-30 15:52:19 +02:00
Matthew Bauer
74c784a79c
treewide: make -Wno-error flags clang-only
...
In 724e833ea2
, I was a little too aggressive in enabling these flags.
Many don’t work in gcc, and we should probably avoid settings them
widely. This makes those flags optional on isclang
2019-04-29 21:34:24 -04:00
Mario Rodas
7a965dcdab
cedille: 1.0.0 -> 1.1.1 ( #60307 )
2019-04-29 21:02:44 +02:00
Daniel Schaefer
786f02f7a4
treewide: Remove usage of isNull
...
isNull "is deprecated; just write e == null instead" says the Nix manual
2019-04-29 14:05:50 +02:00
Timo Kaufmann
6dabc28cd0
sage: add compatibility for R 3.6.0
...
The random number generator seems to have changed. Because of this, a
trivial test adjustment is needed.
2019-04-29 13:37:07 +02:00
Alex Branham
4264ad4c2b
R: 3.5.3 -> 3.6.0
...
The patch is necessary for the test suite to pass without errors. The
fix has already been made upstream but didn't make it into the 3.6.0
release.
Closes https://github.com/NixOS/nixpkgs/pull/60273 .
2019-04-29 13:35:21 +02:00
Bruno Bzeznik
83886b3d91
aragorn: init at 1.2.38 ( #58354 )
2019-04-29 07:18:03 -04:00
Ben
535c38dd73
GeoGebra: 472 -> 535 ( #60272 )
...
* Update GeoGebra
* Update default.nix
2019-04-29 11:25:37 +02:00
Timo Kaufmann
31709b611f
R: add timokau as a maintainer
...
I'm interested in R as a dependency for sage. R changes are likely to
impact sage, so I'd like to get notified on those changes.
2019-04-28 13:20:47 +02:00
Matthew Bauer
87944c3125
Merge pull request #56744 from matthewbauer/macos-10-12
...
Update macOS to 10.12
2019-04-26 22:20:03 -04:00
Matthew Bauer
724e833ea2
treewide: disable -Werror for llvm 7
...
Some of these have errors on newest llvm. It’s easiest to just add
-Wno-error in these cases.
2019-04-26 21:55:04 -04:00
Renaud
5560607988
Merge pull request #59484 from r-ryantm/auto-update/eagle
...
eagle: 9.3.1 -> 9.3.2
2019-04-25 23:32:25 +02:00
Renaud
71c6157fd7
Merge pull request #58534 from bzizou/sumatools.dev
...
sumatools: init at 1.0.34
2019-04-24 22:34:35 +02:00
Renaud
9f26d537e8
Merge pull request #59516 from r-ryantm/auto-update/gmsh
...
gmsh: 4.2.2 -> 4.2.3
2019-04-24 20:40:56 +02:00
worldofpeace
c8c0bd1fea
Merge pull request #51285 from expipiplus1/fped
...
fped: init at unstable-2017-05-11
2019-04-23 06:52:50 -04:00
markuskowa
d0e70ac2d3
Merge pull request #60010 from JohnAZoidberg/https-urls
...
HTTPS urls
2019-04-22 23:37:07 +02:00
Austin Seipp
b0fea1dc9c
verilog: 2018.12.15 -> 2019.03.27, parallel build
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-04-22 14:27:45 -05:00
Austin Seipp
fe8eb566b5
symbiyosys: 2019.03.28 -> 2019.04.18
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-04-22 14:27:45 -05:00
Daniel Schaefer
bac4d95aa2
treewide: Change URLs to HTTPS
...
Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them
if there's actual content. Inspired by
https://github.com/NixOS/nixpkgs/issues/60004
2019-04-22 10:19:54 +02:00
Timo Kaufmann
512097dece
Merge pull request #59921 from timokau/gap-update
...
gap: 4.10.0 -> 4.10.1
2019-04-20 13:17:04 +02:00
R. RyanTM
0dc3184871
picard-tools: 2.18.27 -> 2.19.0 ( #59634 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-04-20 13:15:40 +02:00
Timo Kaufmann
9c7f774a39
gap: mark as broken on darwin
...
Has been failing to build for a while.
2019-04-20 12:36:11 +02:00
Timo Kaufmann
af6739fdd7
gap: 4.10.0 -> 4.10.1
2019-04-20 09:54:27 +02:00
Aaron Andersen
77dbfa3a55
Merge pull request #53803 from jfrankenau/init-groove
...
groove: init at 5.7.4
2019-04-19 20:27:18 -04:00
Aaron Andersen
11cf1a282d
Merge pull request #58377 from bzizou/exonerate
...
exonerate: init at 2.4.0
2019-04-19 13:25:49 -04:00
Mario Rodas
f84a7b3828
Merge pull request #59834 from luispedro/add_prodigal
...
Prodigal: init at 2.6.3
2019-04-19 09:50:03 -05:00
Bruno Bzeznik
6a8c9bff8f
exonerate: init at 2.4.0
2019-04-19 14:58:57 +02:00
Bruno Bzeznik
90b4796c60
sumatools: init at 1.0.34
2019-04-19 14:43:40 +02:00
Johannes Frankenau
e7f021ca93
groove: init at 5.7.4
2019-04-19 13:34:30 +02:00
Luis Pedro Coelho
3fc55eec05
Prodigal: init at 2.6.3
2019-04-19 08:38:14 +02:00
Timo Kaufmann
49b8efcb84
sage: 8.6 -> 8.7
...
https://groups.google.com/forum/#!topic/sage-release/3m8PV9JkFro
2019-04-17 22:44:32 +02:00
Timo Kaufmann
e0e5445667
sage: fix another transient sig_on bug
...
Caused a test failure on hydra, backporting upstream fix.
2019-04-17 19:58:07 +02:00
R. RyanTM
d11731130d
star: 2.7.0c -> 2.7.0f
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
2019-04-16 18:30:49 +02:00
Michael Raskin
3d3a415f24
petrinizer: init at 0.9.1.1
2019-04-16 15:11:03 +02:00
Austin Seipp
bb27856a5c
Merge pull request #59522 from r-ryantm/auto-update/gtkwave
...
gtkwave: 3.3.99 -> 3.3.100
2019-04-16 02:12:25 -05:00
Matthew Bauer
f475aeaf29
Merge pull request #59535 from matthewbauer/homepage-fixes
...
treewide: update homepages to https where available
2019-04-15 20:47:30 -04:00
Matthew Bauer
290a5d916e
treewide: update homepages to https where available
...
Based on "problems" from repology:
https://repology.org/repository/nix_unstable/problems
Mostly simple changes to reflect redirects.
2019-04-15 10:10:05 -04:00
R. RyanTM
c906798997
jmol: 14.29.32 -> 14.29.36 ( #59546 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2019-04-15 12:02:41 +02:00
Austin Seipp
a5add1e623
symbiyosys: 2018.12.09 -> 2019.03.28
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-04-15 00:17:54 -05:00
Luis Pedro Coelho
13a1f2c296
eggnog-mapper: init at 1.0.3 ( #58905 )
2019-04-14 17:22:47 -07:00
R. RyanTM
8a4ad20ed0
gtkwave: 3.3.99 -> 3.3.100
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
2019-04-14 14:47:32 -07:00
R. RyanTM
00d17e36ea
gmsh: 4.2.2 -> 4.2.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2019-04-14 13:15:32 -07:00
Timo Kaufmann
62c288ec20
python.pkgs.sympy: 1.3 -> 1.4 ( #59482 )
2019-04-14 17:52:03 +02:00
Michael Raskin
796050fedd
openmvs: mark as broken
2019-04-14 17:45:21 +02:00
R. RyanTM
c3a9b4e1fd
eagle: 9.3.1 -> 9.3.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
2019-04-14 07:47:26 -07:00
markuskowa
87f595a1f0
Merge pull request #56615 from r-ryantm/auto-update/clp
...
clp: 1.16.11 -> 1.17.0
2019-04-14 12:05:32 +02:00
Markus Kowalewski
19dfffff3c
clp: restrict to x86_64-linux + darwin
2019-04-14 00:17:25 +02:00
Markus Kowalewski
e879991e1b
clp: 1.17.0 -> 1.17.11
2019-04-14 00:04:06 +02:00
Joe Hermaszewski
0e2d27f5af
fped: init at 2017-05-11
2019-04-13 13:36:46 +08:00
Julien Dehos
a13f5d0da1
mxnet: fix cuda support enabled build ( #48781 )
2019-04-12 10:31:22 +00:00
Frederik Rietdijk
993e2b4ec2
Merge pull request #59098 from NixOS/staging-next
...
Staging next
2019-04-11 18:23:14 +02:00
Frederik Rietdijk
230c67f43b
Merge master into staging-next
2019-04-11 07:50:23 +02:00
Dmitry Kalinkin
c321b64b3f
snakemake: 5.2.2 -> 5.4.4
2019-04-10 14:18:26 -04:00
xeji
cc118b4426
Merge pull request #58676 from smaret/gildas-update
...
gildas: update to 20190401_a
2019-04-10 14:30:50 +02:00
Frederik Rietdijk
d108b49168
Merge master into staging-next
2019-04-09 16:38:35 +02:00
Vladimír Čunát
f7ddff5c6d
R: fix regression from commit cbade453
#58989
...
Normally the directory is created in fixup phase.
2019-04-07 17:38:45 +02:00
Frederik Rietdijk
7f7da0a16f
Merge master into staging-next
2019-04-07 15:14:52 +02:00
rhokue
cbade453ac
R: explicitly declare which
as a run-time dependency
...
Fixes https://github.com/NixOS/nixpkgs/issues/58963 .
Closes https://github.com/NixOS/nixpkgs/pull/58989 .
2019-04-07 11:12:43 +02:00
Frederik Rietdijk
4a125f6b20
Merge master into staging-next
2019-04-07 08:33:41 +02:00
Timo Kaufmann
ceede33ddf
python.pkgs.cypari2: 2.0.3 -> 2.1.0 ( #59085 )
2019-04-06 21:46:13 +00:00
Pascal Wittmann
cfb6ade58c
Merge pull request #58931 from bzizou/migrate
...
migrate: init at 3.7.2
2019-04-06 14:23:50 +02:00
Vincent Laporte
50a03f8632
hol_light: 2018-09-30 -> 2019-03-27
2019-04-06 11:03:29 +02:00
Timo Kaufmann
6662fbc822
Merge pull request #58961 from timokau/nauty-features
...
nauty: disable cpu feature detection
2019-04-05 13:12:05 +00:00
Jan Tojnar
cb1a20499a
Merge branch 'master' into staging
2019-04-05 11:37:15 +02:00
Bruno Bzeznik
0b03f44c2f
migrate: init at 3.7.2
2019-04-05 09:01:36 +02:00
Timo Kaufmann
7f22a42976
nauty: disable cpu feature detection
2019-04-04 14:54:55 +02:00
Timo Kaufmann
15045e6233
nauty: add timokau as a maintainer
...
I'm interested in this package as a sage dependency.
2019-04-04 14:54:31 +02:00
Timo Kaufmann
5880c449dd
nauty: small refactoring
2019-04-04 14:54:05 +02:00
R. RyanTM
9f68f2a7dc
verilator: 4.010 -> 4.012
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
2019-04-03 13:43:11 -05:00
markuskowa
e2ce5fd7fe
Merge pull request #58860 from r-ryantm/auto-update/quantum-espresso
...
quantum-espresso: 6.3 -> 6.4
2019-04-03 15:42:40 +02:00
Markus Kowalewski
c109aaa5cb
quantum-espresso: remove outdated makefile fix
2019-04-03 15:00:17 +02:00
markuskowa
126e1f8fd0
Merge pull request #58538 from bzizou/stacks
...
stacks: init at 2.3e
2019-04-03 14:41:00 +02:00
Bruno Bzeznik
e7899d2a00
stacks: init at 2.3e
2019-04-03 14:01:32 +02:00
R. RyanTM
882247fc3f
quantum-espresso: 6.3 -> 6.4
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/quantum-espresso/versions
2019-04-02 15:30:36 -07:00
Timo Kaufmann
69555825f8
eclib: 20180815 -> 20190226 ( #58801 )
...
Needs a sage patch, see
https://trac.sagemath.org/ticket/27360 .
2019-04-02 15:39:20 +00:00