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Merge pull request #141301 from jbedo/samtools

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Sandro 2021-10-12 11:30:07 +02:00 • committed by GitHub
commit 2017c3a883
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3 changed files with 6 additions and 6 deletions
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4
pkgs/applications/science/biology/samtools/default.nix
View file

@ -2,11 +2,11 @@
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "samtools"; pname = "samtools";
version = "1.11"; version = "1.13";
src = fetchurl { src = fetchurl {
url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2"; url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2";
sha256 = "1dp5wknak4arnw5ghhif9mmljlfnw5bgm91wib7z0j8wdjywx0z2"; sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA=";
}; };
nativeBuildInputs = [ perl ]; nativeBuildInputs = [ perl ];

4
pkgs/development/libraries/science/biology/htslib/default.nix
View file

@ -2,11 +2,11 @@
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "htslib"; pname = "htslib";
version = "1.11"; version = "1.13";
src = fetchurl { src = fetchurl {
url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2"; url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2";
sha256 = "1mrq4mihzx37yqhj3sfz6da6mw49niia808bzsw2gkkgmadxvyng"; sha256 = "sha256-8kB9+fl/C7awdlZXnkGhylEARkBntrIb+WKi6ksO/WU=";
}; };
# perl is only used during the check phase. # perl is only used during the check phase.

4
pkgs/development/python-modules/pysam/default.nix
View file

@ -15,7 +15,7 @@
buildPythonPackage rec { buildPythonPackage rec {
pname = "pysam"; pname = "pysam";
version = "0.16.0.1"; version = "0.17.0";
# Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is # Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is
# missing some files which cause test failures. # missing some files which cause test failures.
@ -24,7 +24,7 @@ buildPythonPackage rec {
owner = "pysam-developers"; owner = "pysam-developers";
repo = "pysam"; repo = "pysam";
rev = "v${version}"; rev = "v${version}";
sha256 = "168bwwm8c2k22m7paip8q0yajyl7xdxgnik0bgjl7rhqg0majz0f"; sha256 = "sha256-RDeBq6pwBGCBNIn8YOPQr96GuL6FKEYeLAPQD6XN0iE=";
}; };
nativeBuildInputs = [ samtools ]; nativeBuildInputs = [ samtools ];