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nixpkgs/pkgs/applications/science/biology/bayescan/default.nix

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{ lib, stdenv, fetchurl, unzip, llvmPackages }:
stdenv.mkDerivation rec {
pname = "bayescan";
version = "2.1";
src = fetchurl {
url = "http://cmpg.unibe.ch/software/BayeScan/files/BayeScan${version}.zip";
sha256 = "0ismima8j8z0zj9yc267rpf7z90w57b2pbqzjnayhc3ab8mcbfy6";
};
nativeBuildInputs = [ unzip ];
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buildInputs = lib.optional stdenv.cc.isClang llvmPackages.openmp;
# Disable FORTIFY_SOURCE or the binary fails with "buffer overflow"
hardeningDisable = [ "fortify" ];
sourceRoot = "BayeScan${version}/source";
postPatch = ''
substituteInPlace Makefile --replace "-static" "" \
--replace "g++" "c++"
'';
installPhase = ''
mkdir -p $out/bin
mkdir -p $out/share/doc/bayescan
cp bayescan_${version} $out/bin
cp -r ../*pdf ../input_examples ../"R functions" $out/share/doc/bayescan
'';
meta = with lib; {
description = "Detecting natural selection from population-based genetic data";
homepage = "http://cmpg.unibe.ch/software/BayeScan";
license = licenses.gpl3;
maintainers = [ maintainers.bzizou ];
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platforms = lib.platforms.all;
};
}