| .. |
|
ants
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
aragorn
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
bayescan
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
bcftools
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
bedops
|
bedops: init 2.4.39
|
2021-03-28 22:27:51 -04:00 |
|
bedtools
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
bftools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
blast
|
blast: 2.10.0 -> 2.11.0
|
2021-02-06 19:20:56 +00:00 |
|
bowtie
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
bowtie2
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
bppsuite
|
|
|
|
bwa
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
cd-hit
|
cd-hit: remove non-existent package
|
2021-01-19 01:16:25 -08:00 |
|
clustal-omega
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
cmtk
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
conglomerate
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
dcm2niix
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
deeptools
|
|
|
|
delly
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
diamond
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
ecopcr
|
ecopcr: use spaces for indentation
|
2021-01-20 10:53:10 +10:00 |
|
eggnog-mapper
|
treewide: makeWrapper buildInputs to nativeBuildInputs
|
2021-02-19 20:09:16 +07:00 |
|
emboss
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
est-sfs
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
exonerate
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
2021-01-19 01:16:25 -08:00 |
|
EZminc
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
2021-01-19 01:16:25 -08:00 |
|
fastp
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
freebayes
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
hisat2
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
hmmer
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
igv
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
inormalize
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
itsx
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
iv
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
kallisto
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
kent
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
kssd
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
last
|
last: 1178 -> 1179
|
2021-02-21 21:24:17 +00:00 |
|
lumpy
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
MACS2
|
macs2: init at 2.2.7.1
|
2021-04-14 10:17:53 -04:00 |
|
macse
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
manta
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
megahit
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
meme-suite
|
meme-suite: init at 5.1.1 (#118603)
|
2021-04-05 22:43:27 +02:00 |
|
messer-slim
|
messer-slim: 3.2.1 -> 3.6
|
2021-03-04 18:40:37 +00:00 |
|
migrate
|
treewide: fix double quoted strings in meta.description
|
2021-01-24 19:56:59 +07:00 |
|
minc-tools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
minc-widgets
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
minia
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
minimap2
|
treewide: editorconfig fixes
|
2021-01-20 09:11:11 +10:00 |
|
mni_autoreg
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
mosdepth
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
mrbayes
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
mrtrix
|
|
|
|
muscle
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
N3
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
ncbi-tools
|
treewide: fix double quoted strings in meta.description
|
2021-01-24 19:56:59 +07:00 |
|
neuron
|
mpi: use mpi attribute consistently as the default MPI implementations
|
2021-01-23 12:15:13 +01:00 |
|
niftyreg
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
niftyseg
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
obitools
|
treewide: remove stdenv where not needed
|
2021-01-25 18:31:47 +01:00 |
|
octopus
|
octopus: 0.7.1 -> 0.7.3
|
2021-04-20 10:13:25 +10:00 |
|
paml
|
treewide: fix double quoted strings in meta.description
|
2021-01-24 19:56:59 +07:00 |
|
picard-tools
|
picard-tools: 2.25.0 -> 2.25.1
|
2021-03-26 03:16:44 +00:00 |
|
platypus
|
treewide: makeWrapper buildInputs to nativeBuildInputs
|
2021-02-19 20:09:16 +07:00 |
|
plink-ng
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
poretools
|
treewide: remove stdenv where not needed
|
2021-01-25 18:31:47 +01:00 |
|
prodigal
|
treewide: add targetPrefix to hardcoded references to CC=cc
|
2021-02-20 01:01:46 +07:00 |
|
quast
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
raxml
|
mpi: use mpi attribute consistently as the default MPI implementations
|
2021-01-23 12:15:13 +01:00 |
|
sambamba
|
sambamba: 0.7.1 -> 0.8.0
|
2021-03-18 17:41:30 +02:00 |
|
samblaster
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
samtools
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
|
seaview
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
snpeff
|
treewide: unzip buildInputs to nativeBuildInputs (#112302)
|
2021-02-20 16:01:53 -05:00 |
|
somatic-sniper
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
sortmerna
|
sortmerna: mark broken on darwin
|
2021-01-26 12:55:33 -05:00 |
|
spades
|
SPAdes: 3.15.1 -> 3.15.2 + fix license and platform
|
2021-03-23 10:51:01 +01:00 |
|
stacks
|
stacks: 2.53 -> 2.55
|
2021-03-09 17:19:55 +00:00 |
|
star
|
star: 2.7.7a -> 2.7.8a
|
2021-02-23 10:38:00 +00:00 |
|
strelka
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
sumatools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
svaba
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
tebreak
|
treewide: remove stdenv where not needed
|
2021-01-25 18:31:47 +01:00 |
|
trimal
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
truvari
|
|
|
|
varscan
|
treewide: makeWrapper buildInputs to nativeBuildInputs
|
2021-02-19 20:09:16 +07:00 |
|
vcftools
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
2021-01-19 01:16:25 -08:00 |
|
whisper
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
|
xenomapper
|
|
|
