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nixpkgs/pkgs/development/ocaml-modules/phylogenetics/default.nix
2021-01-25 18:31:47 +01:00

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{ lib, buildDunePackage, fetchFromGitHub, ppx_deriving
, alcotest, angstrom-unix, biocaml, gnuplot, gsl, lacaml, menhir, owl, printbox }:
buildDunePackage rec {
pname = "phylogenetics";
version = "unstable-2020-11-23";
useDune2 = true;
src = fetchFromGitHub {
owner = "biocaml";
repo = pname;
rev = "e6e10efa0a3a8fd61bf4ab69e91a09549cc1ded6";
sha256 = "0pmypzp0rvlpzm8zpbcfkphwnhrpyfwfv44kshvx2f8nslmksh8c";
};
minimumOCamlVersion = "4.08"; # e.g., uses Float.min
checkInputs = [ alcotest ];
buildInputs = [ menhir ];
propagatedBuildInputs = [ angstrom-unix biocaml gnuplot gsl lacaml owl ppx_deriving printbox ];
doCheck = false; # many tests require bppsuite
meta = with lib; {
inherit (src.meta) homepage;
description = "Bioinformatics library for Ocaml";
maintainers = [ maintainers.bcdarwin ];
license = licenses.cecill-b;
};
}