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4a7f99d55d
Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
38 lines
946 B
Nix
38 lines
946 B
Nix
{ lib, stdenv, fetchurl, htslib, zlib, bzip2, lzma, curl, perl, python, bash }:
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stdenv.mkDerivation rec {
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pname = "bcftools";
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version = "1.11";
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src = fetchurl {
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url = "https://github.com/samtools/bcftools/releases/download/${version}/${pname}-${version}.tar.bz2";
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sha256 = "0r508mp15pqzf8r1269kb4v5naw9zsvbwd3cz8s1yj7carsf9viw";
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};
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buildInputs = [ htslib zlib bzip2 lzma curl perl python ];
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makeFlags = [
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"HSTDIR=${htslib}"
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"prefix=$(out)"
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"CC=cc"
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];
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preCheck = ''
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patchShebangs misc/
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patchShebangs test/
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sed -ie 's|/bin/bash|${bash}/bin/bash|' test/test.pl
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'';
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enableParallelBuilding = true;
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doCheck = true;
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meta = with lib; {
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description = "Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants";
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license = licenses.mit;
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homepage = "http://www.htslib.org/";
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platforms = platforms.unix;
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maintainers = [ maintainers.mimame ];
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};
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}
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