mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-07 13:03:06 +00:00
0c69b50356
Semi-automatic update. These checks were performed: - built on NixOS - found 2.17.10 with grep in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10 - found 2.17.10 in filename of file in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10 cc "@jbedo"
31 lines
915 B
Nix
31 lines
915 B
Nix
{stdenv, fetchurl, jre, makeWrapper}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
name = "picard-tools-${version}";
|
|
version = "2.17.10";
|
|
|
|
src = fetchurl {
|
|
url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar";
|
|
sha256 = "0lf9appcs66mxmirzbys09xhq38kpa4ldxwwzrr9y2cklnxjn4hg";
|
|
};
|
|
|
|
buildInputs = [ jre makeWrapper ];
|
|
|
|
phases = [ "installPhase" ];
|
|
|
|
installPhase = ''
|
|
mkdir -p $out/libexec/picard
|
|
cp $src $out/libexec/picard/picard.jar
|
|
mkdir -p $out/bin
|
|
makeWrapper ${jre}/bin/java $out/bin/picard --add-flags "-jar $out/libexec/picard/picard.jar"
|
|
'';
|
|
|
|
meta = with stdenv.lib; {
|
|
description = "Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.";
|
|
license = licenses.mit;
|
|
homepage = https://broadinstitute.github.io/picard/;
|
|
maintainers = with maintainers; [ jbedo ];
|
|
platforms = platforms.all;
|
|
};
|
|
}
|