mirror of
https://github.com/NixOS/nixpkgs.git
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184 lines
6.9 KiB
Nix
184 lines
6.9 KiB
Nix
# TODO
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# - consider writing a script to convert spkgs to nix packages, similar to vim
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# or cabal2nix. This would allow a more efficient and "cleaner" build, greater
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# flexibility and the possibility to select which dependencies to add and which
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# to remove. It would also allow to use system packages for some dependencies
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# and recompile others (optimized for the system) without recompiling everything.
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# - add optdeps:
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# - imagemagick
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# - texlive full for documentation
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# - ...
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# - further seperate build outputs. Also maybe run `make doc`.
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# Configure flags like --bindir and --libdir oculd also be used for that, see
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# ./configure --help`.
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# Other resources:
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# - https://wiki.debian.org/DebianScience/Sage
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# - https://github.com/cschwan/sage-on-gentoo
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# - https://git.archlinux.org/svntogit/community.git/tree/trunk?h=packages/sagemath
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{ stdenv
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, fetchurl
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, perl
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, gfortran
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, python
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, autoreconfHook
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, gettext
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, which
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, texlive
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, hevea
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}:
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stdenv.mkDerivation rec {
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version = "8.0";
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name = "sage-${version}";
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src = fetchurl {
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# Note that the source is *not* fetched from github, since that doesn't
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# the upstream folder with all the source tarballs of the spkgs.
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# If those are not present they are fetched at build time, which breaks
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# when building in a sandbox (and probably only works if you install the
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# latest sage version).
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urls = [
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"http://mirrors.mit.edu/sage/src/sage-${version}.tar.gz"
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"ftp://ftp.fu-berlin.de/unix/misc/sage/src/sage-${version}.tar.gz"
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"http://sagemath.polytechnic.edu.na/src/sage-${version}.tar.gz"
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"ftp://ftp.sun.ac.za/pub/mirrors/www.sagemath.org/src/sage-${version}.tar.gz"
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"http://sagemath.mirror.ac.za/src/sage-${version}.tar.gz"
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"http://ftp.leg.uct.ac.za/pub/packages/sage/src/sage-${version}.tar.gz"
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"http://mirror.ufs.ac.za/sagemath/src/sage-${version}.tar.gz"
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"http://mirrors-usa.go-parts.com/sage/sagemath/src/sage-${version}.tar.gz"
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"http://www.cecm.sfu.ca/sage/src/sage-${version}.tar.gz"
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"http://files.sagemath.org/src/sage-${version}.tar.gz"
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"http://mirrors.xmission.com/sage/src/sage-${version}.tar.gz"
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"http://sagemath.c3sl.ufpr.br/src/sage-${version}.tar.gz"
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"http://linorg.usp.br/sage/src/sage-${version}.tar.gz"
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"http://mirror.hust.edu.cn/sagemath/src/sage-${version}.tar.gz"
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"http://ftp.iitm.ac.in/sage/src/sage-${version}.tar.gz"
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"http://ftp.kaist.ac.kr/sage/src/sage-${version}.tar.gz"
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"http://ftp.riken.jp/sagemath/src/sage-${version}.tar.gz"
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"http://mirrors.tuna.tsinghua.edu.cn/sagemath/src/sage-${version}.tar.gz"
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"http://mirrors.ustc.edu.cn/sagemath/src/sage-${version}.tar.gz"
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"http://ftp.tsukuba.wide.ad.jp/software/sage/src/sage-${version}.tar.gz"
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"http://ftp.yz.yamagata-u.ac.jp/pub/math/sage/src/sage-${version}.tar.gz"
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"http://mirror.yandex.ru/mirrors/sage.math.washington.edu/src/sage-${version}.tar.gz"
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"http://mirror.aarnet.edu.au/pub/sage/src/sage-${version}.tar.gz"
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"http://sage.mirror.garr.it/mirrors/sage/src/sage-${version}.tar.gz"
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"http://www.mirrorservice.org/sites/www.sagemath.org/src/sage-${version}.tar.gz"
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"http://mirror.switch.ch/mirror/sagemath/src/sage-${version}.tar.gz"
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"https://mirrors.up.pt/pub/sage/src/sage-${version}.tar.gz"
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"http://www-ftp.lip6.fr/pub/math/sagemath/src/sage-${version}.tar.gz"
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"http://ftp.ntua.gr/pub/sagemath/src/sage-${version}.tar.gz"
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];
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sha256 = "1a9rhb8jby6fdqa2s7n2fl9jwqqlsl7qz7dbpbwvg6jwlrvni7fg";
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};
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postPatch = ''
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substituteAllInPlace src/bin/sage-env
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'';
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installPhase = ''
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# Sage installs during first `make`, `make install` is no-op and just takes time.
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'';
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outputs = [ "out" "doc" ];
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buildInputs = [
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perl # needed for the build
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python # needed for the build
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gfortran # needed to build giac
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autoreconfHook # needed to configure sage with prefix
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gettext # needed to build the singular spkg
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hevea # needed to build the docs of the giac spkg
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which # needed in configure of mpir
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# needed to build the docs of the giac spkg
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(texlive.combine { inherit (texlive)
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scheme-basic
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collection-pstricks # needed by giac
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times # font needed by giac
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stmaryrd # needed by giac
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babel-greek # optional for giac, otherwise throws a bunch of latex command not founds
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;
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})
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];
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patches = [
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# fix usages of /bin/rm
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./spkg-singular.patch
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# help python find the crypt library
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./spkg-python2.patch
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./spkg-python3.patch
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# fix usages of /usr/bin/perl
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./spkg-git.patch
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# fix usages of /bin/cp and add necessary argument to function call
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./spkg-giac.patch
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# environment
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./env.patch
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];
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enableParallelBuilding = true;
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hardeningDisable = [
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"format" # needed to build palp, for lines like `printf(ctime(&_NFL->TIME))`
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# TODO could be patched with `sed s|printf(ctime(\(.*\)))|%s... or fixed upstream
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];
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preConfigure = ''
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export SAGE_NUM_THREADS=$NIX_BUILD_CORES
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export SAGE_ATLAS_ARCH=fast
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export HOME=$out/sage-home
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mkdir -p $out/sage-home
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mkdir -p "$out"
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# we need to keep the source around
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dir="$PWD"
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cd ..
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mv "$dir" "$out/sage-root"
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cd "$out/sage-root" # build in target dir, since `make` is also `make install`
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'';
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# for reference: http://doc.sagemath.org/html/en/installation/source.html
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preBuild = ''
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# TODO do this conditionally
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export SAGE_SPKG_INSTALL_DOCS='no'
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patchShebangs build
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'';
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postBuild = ''
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rm -r "$out/sage-root/upstream" # don't keep the sources of all the spkgs
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rm -r "$out/sage-root/src/build"
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rm -rf "$out/sage-root/src/.git"
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rm -r "$out/sage-root/logs"
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# Fix dependency cycle between out and doc
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rm -f "$out/sage-root/config.status"
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rm -f "$out/sage-root/build/make/Makefile-auto"
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rm -f "$out/sage-home/.sage/gap/libgap-workspace-"*
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'';
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# TODO there are some doctest failures, which seem harmless.
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# We should figure out a way to fix the failures or ignore only those tests.
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doCheck = false;
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checkTarget = "ptestalllong"; # all long tests in parallell
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preCheck = ''
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export SAGE_TIMEOUT=0 # no timeout
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export SAGE_TIMEOUT_LONG=0 # no timeout
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'';
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meta = {
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homepage = http://www.sagemath.org;
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description = "A free open source mathematics software system";
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# taken from the homepage
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longDescription = ''
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SageMath is a free open-source mathematics software system licensed under the GPL. It builds on top of many existing open-source packages: NumPy, SciPy, matplotlib, Sympy, Maxima, GAP, FLINT, R and many more. Access their combined power through a common, Python-based language or directly via interfaces or wrappers.
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Mission: Creating a viable free open source alternative to Magma, Maple, Mathematica and Matlab.
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'';
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license = stdenv.lib.licenses.gpl2Plus;
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platforms = stdenv.lib.platforms.linux;
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maintainers = with stdenv.lib.maintainers; [ timokau ];
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};
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}
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