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nixpkgs/pkgs/applications/science/biology
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Matthew Bauer 74c784a79c treewide: make -Wno-error flags clang-only 
In 724e833ea2, I was a little too aggressive in enabling these flags.
Many don’t work in gcc, and we should probably avoid settings them
widely. This makes those flags optional on isclang
2019-04-29 21:34:24 -04:00
..
ants treewide: remove BUILD_TESTING flag 2019-03-11 10:11:28 -04:00
bcftools bcftools: 1.8 -> 1.9 (#43950) 2018-07-30 22:36:27 +02:00
bedtools bedtools: 2.26.0 -> 2.27.1 2018-01-22 12:09:44 +00:00
bftools bftools: init at 5.9.2 (#53769) 2019-01-10 18:28:28 -05:00
bowtie2 bowtie2: 2.3.4.3 -> 2.3.5 (#58014) 2019-03-31 00:37:38 +01:00
bwa bwa: 0.7.16a -> 0.7.17 2018-01-22 01:58:36 +00:00
cmtk treewide: make -Wno-error flags clang-only 2019-04-29 21:34:24 -04:00
conglomerate lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
dcm2niix
diamond pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
ecopcr
eggnog-mapper eggnog-mapper: init at 1.0.3 (#58905) 2019-04-14 17:22:47 -07:00
emboss
exonerate exonerate: init at 2.4.0 2019-04-19 14:58:57 +02:00
EZminc treewide: remove ctest usages 2018-11-18 19:31:02 -06:00
freebayes pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
hisat2 hisat2: init 2.1.0 2018-08-17 23:03:42 +10:00
hmmer hmmer: 3.1b2 -> 3.2.1 (#50284) 2018-11-13 15:43:44 +01:00
igv igv: 2.4.17 -> 2.4.19 2019-03-03 20:48:52 +01:00
inormalize lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
itsx itsx: init at 1.1.1 2019-03-26 15:52:35 +01:00
iv treewide: http -> https sources (#42676) 2018-06-28 20:43:35 +02:00
kallisto kallisto: init at 0.43.1 2018-01-24 16:16:46 +00:00
megahit megahit: init at 1.1.4 2019-03-31 05:56:14 +02:00
messer-slim messer-slim: init at 3.2.1 2019-02-28 15:11:18 +01:00
migrate migrate: init at 3.7.2 2019-04-05 09:01:36 +02:00
minc-tools lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
minc-widgets lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
minimap2 minimap2: 2.15 -> 2.16 (#57319) 2019-03-27 23:25:52 +01:00
mni_autoreg treewide: remove BUILD_TESTING flag 2019-03-11 10:11:28 -04:00
mosdepth mosdeph: fix compilation with nim 0.19 2018-10-31 22:03:27 +01:00
mrbayes
muscle muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
N3 lib.makePerlPath -> perlPackages.makePerlPath 2018-12-15 03:50:31 +00:00
ncbi-tools treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
neuron treewide: http -> https sources (#42676) 2018-06-28 20:43:35 +02:00
niftyreg niftyreg: init at 1.3.9 2018-11-16 12:24:53 -05:00
niftyseg niftyseg: init at 1.0.0 2018-11-16 12:29:29 -05:00
paml paml: 4.9h -> 4.9i (#57354) 2019-03-27 15:44:21 +01:00
picard-tools picard-tools: 2.18.27 -> 2.19.0 (#59634) 2019-04-20 13:15:40 +02:00
platypus platypus: 2017-03-07 -> 2018-07-22 2018-09-21 22:42:28 +00:00
plink
plink-ng
poretools
prodigal Prodigal: init at 2.6.3 2019-04-19 08:38:14 +02:00
raxml pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
samtools samtools: 1.8 -> 1.9 2018-09-21 22:42:28 +00:00
seaview seaview: init at 4.7 (#46595) 2018-09-13 14:10:44 +02:00
snpeff snpeff: 4.3q -> 4.3t 2019-01-31 15:15:05 +11:00
somatic-sniper somatic-sniper: disable parallel building 2018-08-03 08:27:41 +02:00
stacks stacks: init at 2.3e 2019-04-03 14:01:32 +02:00
star star: 2.7.0c -> 2.7.0f 2019-04-16 18:30:49 +02:00
strelka strelka: init 2.9.5 2018-08-20 08:58:22 +10:00
sumatools sumatools: init at 1.0.34 2019-04-19 14:43:40 +02:00
varscan
vcftools vcftools: 0.1.15 -> 0.1.16 2018-08-08 00:48:04 -07:00