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nixpkgs/pkgs/applications/science/biology/snpeff/default.nix
2018-03-12 16:03:44 +11:00

34 lines
951 B
Nix

{stdenv, fetchurl, jre, unzip, makeWrapper}:
stdenv.mkDerivation rec {
name = "snpeff-${version}";
version = "4.3q";
src = fetchurl {
url = "mirror://sourceforge/project/snpeff/snpEff_v4_3q_core.zip";
sha256 = "0sxz8zy8wrzcy01hyb1cirwbxqyjw30a2x3q6p4l7zmw2szi7mn1";
};
buildInputs = [ unzip jre makeWrapper ];
sourceRoot = "snpEff";
installPhase = ''
mkdir -p $out/libexec/snpeff
cp *.jar *.config $out/libexec/snpeff
mkdir -p $out/bin
makeWrapper ${jre}/bin/java $out/bin/snpeff --add-flags "-jar $out/libexec/snpeff/snpEff.jar"
makeWrapper ${jre}/bin/java $out/bin/snpsift --add-flags "-jar $out/libexec/snpeff/SnpSift.jar"
'';
meta = with stdenv.lib; {
description = "Genetic variant annotation and effect prediction toolbox.";
license = licenses.lgpl3;
homepage = http://snpeff.sourceforge.net/;
maintainers = with maintainers; [ jbedo ];
platforms = platforms.all;
};
}