mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-05 03:53:41 +00:00
34 lines
951 B
Nix
34 lines
951 B
Nix
{stdenv, fetchurl, jre, unzip, makeWrapper}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
name = "snpeff-${version}";
|
|
version = "4.3q";
|
|
|
|
src = fetchurl {
|
|
url = "mirror://sourceforge/project/snpeff/snpEff_v4_3q_core.zip";
|
|
sha256 = "0sxz8zy8wrzcy01hyb1cirwbxqyjw30a2x3q6p4l7zmw2szi7mn1";
|
|
};
|
|
|
|
buildInputs = [ unzip jre makeWrapper ];
|
|
|
|
sourceRoot = "snpEff";
|
|
|
|
installPhase = ''
|
|
mkdir -p $out/libexec/snpeff
|
|
cp *.jar *.config $out/libexec/snpeff
|
|
|
|
mkdir -p $out/bin
|
|
makeWrapper ${jre}/bin/java $out/bin/snpeff --add-flags "-jar $out/libexec/snpeff/snpEff.jar"
|
|
makeWrapper ${jre}/bin/java $out/bin/snpsift --add-flags "-jar $out/libexec/snpeff/SnpSift.jar"
|
|
'';
|
|
|
|
meta = with stdenv.lib; {
|
|
description = "Genetic variant annotation and effect prediction toolbox.";
|
|
license = licenses.lgpl3;
|
|
homepage = http://snpeff.sourceforge.net/;
|
|
maintainers = with maintainers; [ jbedo ];
|
|
platforms = platforms.all;
|
|
};
|
|
|
|
}
|