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nixpkgs/pkgs/applications/science/biology/raxml/default.nix
2021-01-04 11:02:16 +01:00

41 lines
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Nix

{ stdenv
, fetchFromGitHub
, pkgs
, mpi ? false
}:
stdenv.mkDerivation rec {
pname = "RAxML";
version = "8.2.12";
src = fetchFromGitHub {
owner = "stamatak";
repo = "standard-${pname}";
rev = "v${version}";
sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh";
};
buildInputs = stdenv.lib.optionals mpi [ pkgs.openmpi ];
# TODO darwin, AVX and AVX2 makefile targets
buildPhase = if mpi then ''
make -f Makefile.MPI.gcc
'' else ''
make -f Makefile.SSE3.PTHREADS.gcc
'';
installPhase = if mpi then ''
mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
'' else ''
mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
'';
meta = with stdenv.lib; {
description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
license = licenses.gpl3;
homepage = "https://sco.h-its.org/exelixis/web/software/raxml/";
maintainers = [ maintainers.unode ];
platforms = [ "i686-linux" "x86_64-linux" ];
};
}