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nixpkgs/pkgs/applications/science/biology/inormalize/default.nix
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib;
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
2021-01-11 10:38:22 +01:00

38 lines
1 KiB
Nix

{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper,
perlPackages,
libminc, EBTKS }:
stdenv.mkDerivation rec {
pname = "inormalize";
name = "${pname}-2014-10-21";
src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = "79cea9cdfe7b99abfd40afda89ab2253b596ad2f";
sha256 = "1ahqv5q0ljvji99a5q8azjkdf6bgp6nr8lwivkqwqs3jm0k5clq7";
};
patches = [ ./lgmask-interp.patch ./nu_correct_norm-interp.patch ];
nativeBuildInputs = [ cmake makeWrapper ];
buildInputs = [ libminc EBTKS ];
propagatedBuildInputs = with perlPackages; [ perl GetoptTabular MNI-Perllib ];
cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake" "-DEBTKS_DIR=${EBTKS}/lib/" ];
postFixup = ''
for p in $out/bin/*; do
wrapProgram $p --prefix PERL5LIB : $PERL5LIB
done
'';
meta = with lib; {
homepage = "https://github.com/BIC-MNI/${pname}";
description = "Program to normalize intensity of MINC files";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
};
}