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983 commits

Author SHA1 Message Date
Pjotr Prins 3ce5cba9c7 Added pkgMaintainer info to these 'biology' section packages. 
svn path=/nixpkgs/trunk/; revision=12987
 2008-10-07 15:12:06 +00:00
Pjotr Prins b3aa5d6bfc Added meta.pkgMaintainer to biology packages - a claim to fame, or 
you know who to blame!

svn path=/nixpkgs/trunk/; revision=12986
 2008-10-07 15:12:01 +00:00
Pjotr Prins 4ab58fc7f3 Squashed commit of the following: 
commit 74c0e9192e17d9dfce50f811fdb7e82a2785134e
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:33:39 2008 +0200

    Merge

commit ad91fb07a47226ed9e99f2dcb55b69ea0e70aa84
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:23:20 2008 +0200

    openmotif: added some comments on license and download

commit 68a552975f5c7e0964c7c9625e08de0864757255
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:10:49 2008 +0200

    Match parameters so arb starts compiling against openmotif

commit 16c52fb4071193f89acf6f7f53cfeff322285555
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 16:04:06 2008 +0200

    Added openmotif package

commit 75c4bba418f16859e99e97f48785e27ad87e99f5
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 15:20:55 2008 +0200

    Adding openmotif

commit 83a847d194b007e2ef856f2a5ad7c49939b6cf8c
Merge: 52918f1... 5ba4f06...
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Tue Oct 7 14:15:05 2008 +0200

    Merge branch 'syncsvn'

    Conflicts:
    	pkgs/top-level/all-packages.nix

commit 52918f1f3af55429cc80c99d695e4a8d8b7869b0
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 18:31:06 2008 +0200

    arb: Removed xfig as dependency (will add later)
    arb: Don't recurse chmod settings of shared dir

commit c283733782dcbf0dcd88710e83f3eededf8f0866
Merge: e434cdf... a51773a...
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 17:09:42 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit a51773a3d4295d7ce16e6a7e983ded814180e30a
Merge: 290ae0b... 241012c...
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Mon Oct 6 16:54:14 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit e434cdf9b9acefab4f54e18204ff16af179c442d
Merge: ef57566... 241012c...
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 16:12:27 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit 241012cae194d0f770be2224b5bb18b66e3ae0f0
Author: Pj <wrk@bio03.(none)>
Date:   Mon Oct 6 16:11:11 2008 +0200

    Added older version of lesstif for arb

commit 290ae0b802285a8dda41b3c5730e53239d73b47c
Merge: dfdf7fe... 53b6ceb...
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Mon Oct 6 15:20:17 2008 +0200

    Merge branch 'master' of ssh://bio4.xparrot.eu//export/data/repositories/git/nixpkgs-testing-pjotr

commit dfdf7fe8ac9599ec372bdb83630a236f227ad7d5
Author: Pjotr <pjotr.public05@thebird.nl>
Date:   Mon Oct 6 15:15:04 2008 +0200

    Fixed missing parameters for arb - and added kernelHeaders_2.6.18

commit ef57566834eb786cdcb57a799b7d1cb284eee389
Author: Pjotr Prins <wrk@nema-ws01.wurnet.nl>
Date:   Mon Oct 6 15:06:26 2008 +0200

    Changed arb permissions and priority

svn path=/nixpkgs/trunk/; revision=12985
 2008-10-07 14:35:11 +00:00
Eelco Dolstra a4b6f1066c * Subversion 1.5: fix building the Apache module and the 
Python/Perl bindings.

svn path=/nixpkgs/trunk/; revision=12979
 2008-10-06 23:01:54 +00:00
Eelco Dolstra 781bb5a6e1 * Apache httpd: build against apr, aputil and pcre instead of using 
its own copies.

svn path=/nixpkgs/trunk/; revision=12971
 2008-10-06 13:38:45 +00:00
Pjotr Prins bd0b84b3c7 Changed arb permissions and priority 
svn path=/nixpkgs/trunk/; revision=12969
 2008-10-06 13:17:56 +00:00
Eelco Dolstra 6591cc2640 * Subversion 1.5.2, Neon 0.28.3, Apache 2.2.9. 
svn path=/nixpkgs/trunk/; revision=12966
 2008-10-06 12:35:05 +00:00
Pjotr Prins 6d70506401 Small fixes to ARB 
Included older kernel headers

svn path=/nixpkgs/trunk/; revision=12961
 2008-10-05 10:56:47 +00:00
Pjotr Prins c38a72a573 Added more dependencies for ARB 
svn path=/nixpkgs/trunk/; revision=12959
 2008-10-05 10:56:44 +00:00
Pjotr Prins fcb2efbc92 Added shared dir and updated reference to ARB 
svn path=/nixpkgs/trunk/; revision=12958
 2008-10-05 10:56:23 +00:00
Pjotr Prins 29d6189e8b The arb package (biology) 
svn path=/nixpkgs/trunk/; revision=12956
 2008-10-05 09:03:58 +00:00
Pjotr Prins 034f28e268 Biology package 
svn path=/nixpkgs/trunk/; revision=12953
 2008-10-05 09:00:19 +00:00
Pjotr Prins 6c772d627f rq (a cluster runner) works 
svn path=/nixpkgs/trunk/; revision=12950
 2008-10-05 08:48:49 +00:00
Pjotr Prins d2499a6e52 Patch for rq (send upstream) 
svn path=/nixpkgs/trunk/; revision=12949
 2008-10-05 08:48:23 +00:00
Pjotr Prins df1e47822b Lower priority of this package because of zlib.so conflict 
svn path=/nixpkgs/trunk/; revision=12945
 2008-10-05 08:42:40 +00:00
Marc Weber 7d09a82119 opera: don't strip because of patchelf usage 
svn path=/nixpkgs/trunk/; revision=12943
 2008-10-04 18:18:23 +00:00
Michael Raskin b6531cd295 Desperate effort to fix x86_64 build by using -fPIC 
svn path=/nixpkgs/trunk/; revision=12942
 2008-10-04 16:21:28 +00:00
Michael Raskin 3a7ffa5c58 Some of preparation work for adding Xen. Troubles: 1. Xen Dom0 support not complete in mainline. 2. Xen's love to check for headers in /usr/include. To do afterwards: We need to change bootloading setup a bit. 
svn path=/nixpkgs/trunk/; revision=12941
 2008-10-04 15:24:08 +00:00
Ludovic Courtès e2c0146ad0 GNU IceCat 3.0.3-g1. 
svn path=/nixpkgs/trunk/; revision=12936
 2008-10-02 13:00:18 +00:00
Ludovic Courtès 4e283a4dcb MPlayerPlugin: Add missing `icecat3-idldir.path'. 
svn path=/nixpkgs/trunk/; revision=12931
 2008-09-29 21:59:31 +00:00
Ludovic Courtès b46faa7a45 GNU IceCat: Allow compilation of XulRunner. 
In turn, this allows compilation of plug-ins like MPlayer's.

svn path=/nixpkgs/trunk/; revision=12930
 2008-09-29 21:58:25 +00:00
Ludovic Courtès 2e30347099 MPlayerPlugin: Allow compilation with GNU IceCat 3. 
Similar changes would allow it to be compiled for Mozilla Firefox 3.

svn path=/nixpkgs/trunk/; revision=12929
 2008-09-29 21:56:17 +00:00
Marc Weber c4906848f4 fix building of opera, it is still killed 
svn path=/nixpkgs/trunk/; revision=12928
 2008-09-27 00:45:55 +00:00
Ludovic Courtès 4f0a7f0d40 GNU gv 3.6.6. 
svn path=/nixpkgs/trunk/; revision=12927
 2008-09-26 15:31:38 +00:00
Ludovic Courtès fab4b2bca4 bitlbee-otr: Correctly link against libgcrypt. 
svn path=/nixpkgs/trunk/; revision=12926
 2008-09-26 12:32:06 +00:00
Ludovic Courtès d495ee42d9 Add Bitbee-OTR, an unofficial version of Bitlbee with OTR support. 
svn path=/nixpkgs/trunk/; revision=12925
 2008-09-26 09:03:22 +00:00
Ludovic Courtès 47da0e9902 GNU IceCat 3.0.2-g1. 
svn path=/nixpkgs/trunk/; revision=12919
 2008-09-25 08:45:37 +00:00
Ludovic Courtès 3d27b5db34 GNU IceCat: Prepare for Xulrunner build. 
svn path=/nixpkgs/trunk/; revision=12918
 2008-09-25 07:33:04 +00:00
Ludovic Courtès da14d70415 GNU IceCat: Prepare for Xulrunner build. 
svn path=/nixpkgs/trunk/; revision=12917
 2008-09-25 07:32:57 +00:00
Michael Raskin 530c8a4e5b Double oops 
svn path=/nixpkgs/trunk/; revision=12915
 2008-09-24 14:45:28 +00:00
Michael Raskin 6b97827f14 oops, recursionwas needed on an attribute set 
svn path=/nixpkgs/trunk/; revision=12914
 2008-09-24 14:15:35 +00:00
Michael Raskin 4b21f11fda Updated xscreensaver; removed all versions as sources are removed off site anyway.. 
svn path=/nixpkgs/trunk/; revision=12912
 2008-09-24 13:57:16 +00:00
Marc Weber 8d02b898c0 updated darcs to the last stable release (2.0.2) 
svn path=/nixpkgs/trunk/; revision=12908
 2008-09-24 00:43:05 +00:00
Marc Weber 92fb53a1a5 removed subversion14merge 
I don't think anyone is still using it
everyone caring about merging is using git or such anyway
and subversion15 has support built in.

svn path=/nixpkgs/trunk/; revision=12905
 2008-09-24 00:42:21 +00:00
Marc Weber 32e2dbf87f added wavesurfer (sound analysis tool) and its dependency snack (tcl /python sound tool library) 
svn path=/nixpkgs/trunk/; revision=12904
 2008-09-24 00:42:06 +00:00
Eelco Dolstra ba6845d03e * gphoto updated to 2.4.2. 
svn path=/nixpkgs/trunk/; revision=12900
 2008-09-22 17:06:31 +00:00
Pjotr Prins c09e1e540c Introduced pal2nal package 
svn path=/nixpkgs/trunk/; revision=12896
 2008-09-19 13:39:17 +00:00
Pjotr Prins 301f2e3094 Bumped PAML version 
svn path=/nixpkgs/trunk/; revision=12895
 2008-09-19 13:36:35 +00:00
Ludovic Courtès b998c44e4c Change name' attribute of Emacs 23 to emacs-snapshot-23-xxx'. 
This is so that "nix-env -u emacs" doesn't switch from, say, Emacs 22
to Emacs 23.

svn path=/nixpkgs/trunk/; revision=12894
 2008-09-19 12:34:04 +00:00
Eelco Dolstra dbae3ea4a2 * Compiz 0.7.8. 
svn path=/nixpkgs/trunk/; revision=12881
 2008-09-18 15:20:53 +00:00
Michael Raskin 8261a3b1b0 Hm, midori build would like to use file. 
svn path=/nixpkgs/trunk/; revision=12865
 2008-09-15 10:30:04 +00:00
Armijn Hemel dbcba78213 pidgin otr + libotr 3.1.0 -> 3.2.0 
svn path=/nixpkgs/trunk/; revision=12860
 2008-09-13 10:40:33 +00:00
Armijn Hemel 263b3d8f1e 3.0.0 -> 3.0.4 
svn path=/nixpkgs/trunk/; revision=12858
 2008-09-13 10:11:39 +00:00
Armijn Hemel e89fed21f9 update to 1.0.3 
svn path=/nixpkgs/trunk/; revision=12845
 2008-09-11 22:04:27 +00:00
Armijn Hemel 831deddc00 0.9 -> 1.0 (after 20 years or so) 
svn path=/nixpkgs/trunk/; revision=12843
 2008-09-11 17:30:57 +00:00
Ludovic Courtès a2c47582b3 GNU Emacs 22.3. 
svn path=/nixpkgs/trunk/; revision=12825
 2008-09-08 12:10:22 +00:00
Marc Weber 1aea0c12a3 updated freemind to 0.9.0_Beta_20, purified env sto make it work for everyone a 
svn path=/nixpkgs/trunk/; revision=12819
 2008-09-07 21:17:49 +00:00
Michael Raskin 958ea79a78 Added Midori - a light, WebKit-based GTK browser. 
svn path=/nixpkgs/trunk/; revision=12818
 2008-09-07 12:58:56 +00:00
Michael Raskin 317d89066b Force Pidgin to use GnuTLS when it is offered. 
svn path=/nixpkgs/trunk/; revision=12816
 2008-09-06 18:23:55 +00:00
Michael Raskin de45b13c79 Options to remove OpenSSL and use gnuTLS for Pidgin (reported to work better with, say, Amessage or any other XMPP server which requires strong channel encryption) 
svn path=/nixpkgs/trunk/; revision=12813
 2008-09-06 10:30:55 +00:00