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Author SHA1 Message Date
Bobby Rong 296de886d0
Merge pull request #148019 from hjones2199/kstars356 
kstars: 3.5.5 -> 3.5.6
 2021-12-03 09:24:39 +08:00
Jonathan Ringer 35f45f9dd7
Merge pull request #147426 from NixOS/python-unstable 
Python unstable 2021-11-25
 2021-12-02 15:56:12 -08:00
wackbyte 6a2815218d groove: 5.7.4 -> 5.8.1 and jre -> jre8 
I tested OpenJDK11 but it didn't seem to work.
 2021-12-02 22:18:13 +02:00
Markus Kowalewski 53f32adc65 cp2k: build with elpa 2021-12-02 17:22:41 +01:00
qbg b5b4a6ac4f
mathematica: Install desktop items (#147641) 2021-12-02 15:17:23 +02:00
Ryan Burns ac9ad0a998
Merge pull request #148240 from hjones2199/adopt-multi 
adopt multiple packages
 2021-12-01 23:34:28 -08:00
Hunter Jones b952a9b16e adopt multiple packages 2021-12-01 22:04:14 -06:00
Justin Bedo 82aef7957d
fastp: 0.23.1 -> 0.23.2 2021-12-02 08:03:17 +11:00
Vincent Laporte 48406e3fca coq_8_14: 8.14.0 → 8.14.1 
And build Coq ≥ 8.14 with OCaml 4.12
 2021-12-01 13:46:15 +01:00
Jörg Thalheim e89d789748
Merge pull request #148096 from arkivm/fix-mrtrix 
mrtrix: 3.0.2 -> unstable-2021-11-25
 2021-12-01 10:27:11 +00:00
Doron Behar 43ed12450e
Merge pull request #147828 from doronbehar/pkg/maxima 2021-12-01 11:34:38 +02:00
Vikram Narayanan b1d95dca56 mrtrix: 3.0.2 -> unstable-2021-11-25 
The latest stable version fails to build with latest eigen (> 3).
https://github.com/MRtrix3/mrtrix3/pull/2368
 2021-11-30 21:03:53 -08:00
Fabian Affolter c586350dfb
flatcam: add packaging 2021-11-30 18:52:55 -08:00
Doron Behar 50ba747abe yacas: Fix gui and jupyter build 
- Add a patch fixing jsoncpp include.
- Add a build flag for java support.
- Add a `yacas-gui` build that is built with Gui (and jupyter support disabled).
- Enable tests.
- Reformat expression with a 1 input / argument per line.
 2021-12-01 01:51:31 +02:00
Sandro 964a962222
Merge pull request #143545 from r-ryantm/auto-update/betaflight-configurator 2021-11-30 18:13:23 +01:00
Hunter Jones b04ef6a552 kstars: 3.5.5 -> 3.5.6 2021-11-30 08:13:12 -06:00
tilcreator 5989d54401 inav-configurator: init at 3.0.2 2021-11-30 15:11:55 +01:00
Sandro ebdd276b68
Merge pull request #147499 from trofi/fix-samtools-for-ncurses-6.3 2021-11-29 20:33:45 +01:00
Doron Behar 57ab62314b maxima, sage: Simplify lisp-compiler arguments namings 
Make clearer the difference between `maxima` and `maxima-ecl` top-level
attributes. Use the `lisp-compiler` as a passthru for all of sage's
expressions. Add the `pname` attribute for `ecl` for compatibility with
other lisp implementations.
 2021-11-29 15:51:30 +02:00
Doron Behar 8d17f4babf maxima: 5.45.0 -> 5.45.1 
- Reformat expression with 1 line per input / argument
- Add @doronbehar as maintainer.
 2021-11-29 15:51:29 +02:00
Doron Behar 8d227fe05c wxmaxima: 21.05.2 -> 21.11.0 
- Remove the `Version-` prefix from the version.
- Add @doronbehar as maintainer.
 2021-11-29 14:41:57 +02:00
Dmitry Kalinkin 51bf009063
mxnet: 1.6.0 -> 1.8.0 2021-11-28 17:27:31 -05:00
Dmitry Kalinkin b39504da72
mxnet: fix for gcc10+, enable on darwin 2021-11-28 17:27:11 -05:00
Markus Kowalewski 5cfe3c4e82
gromacs: fix double precission build on aarch64 2021-11-28 12:43:57 +01:00
Dmitry Kalinkin b1b02f09ad
Merge pull request #147671 from trofi/fix-root5-for-binutils-2.36 
root5: binutils 2.37 fix
 2021-11-28 04:43:28 -05:00
Bernardo Meurer 51694b0af4 root5: binutils 2.37 fix 
Co-authored-by: TredwellGit <tredwell@tutanota.com>
 2021-11-28 08:49:32 +00:00
Sandro 5d6a70c260
Merge pull request #147202 from voidIess/u/geogebra_6_0_672_0 2021-11-28 03:51:46 +01:00
Markus Kowalewski 8fb36866b8
octopus: 11.2 -> 11.3 2021-11-28 00:04:47 +01:00
Chad Jablonski 7944324d80 programmer-calculator: 2.1 -> 2.2 2021-11-26 23:19:39 -05:00
Sergei Trofimovich 8147fb683c samtools: pull upstream fix for ncurses-6.3 
Without the fix build on ncurses-6.3 fails as:

    bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security]
       88 |     mvprintw(y,x,str);
          |     ^~~~~~~~
 2021-11-26 13:02:05 +00:00
Ellie Hermaszewska 7282988ce9
Merge pull request #147394 from wirew0rm/bumpPicoscope 
picoscope: 7.0.83 -> 7.0.86 + LANG=C
 2021-11-26 09:33:26 +08:00
Sandro eff5cece35
Merge pull request #146648 from florentc/tlaplus 2021-11-25 12:38:31 +01:00
Justin Bedo c1eb0dddea
delly: 0.8.7 -> 0.9.1 2021-11-25 21:19:48 +11:00
Florent C b5d3526bab tlaplus: 1.7.0 -> 1.7.1 
This updates tlaplus to the most recent stable version and directly
fetches the tlatools jar file from the official Github release page
instead of building from the sources. In the previous tlaplus nix
package, there was an issue with the tools when passing some command
line arguments such as `-workers 4` for TLC. A java string method was
not found and the program would not proceed correctly. This solves this
issue.
 2021-11-25 10:56:11 +01:00
voidless a34736a38f geogebra6 6-0-644-0 -> 6-0-676-0 2021-11-24 23:15:54 +01:00
Alexander Krimm e248ab379a picoscope: set LANG=C in wrapper 
The picoscope application seems to crash for non-english locales. This
overrides the LANG environment variable to C. This does not affect the
language selected in the mono gtk GUI.
 2021-11-23 11:26:40 +01:00
Alexander Krimm d56073935d picoscope: 7.0.83 -> 7.0.86 
Update performed via update.py, other affected versions:
libps*: 2.1.75 -> 2.1.76
libpicoipp: 1.3.0-4r121 -> 1.3.0-4r130
 2021-11-23 11:21:26 +01:00
evils decac5a0d2
kicad-unstable: 2021-07-12 -> 6.0.0-rc1 (#142261) 
* kicad-unstable: 2021-07-12 -> 2021-11-10

with changes to library paths

Plugin and Content Manager seems to work
  (not related to the library paths changes)

* kicad-unstable: 2021-11-10 -> 6.0.0-rc1
 2021-11-23 00:05:57 -05:00
evils d2c4e0a3ba
kicad: 5.1.11 -> 5.1.12 (#145403) 
very minor change
5.1.11 was never officially released
  due to a re-tag
 2021-11-23 00:05:27 -05:00
github-actions[bot] 18ad263272
Merge master into staging-next 2021-11-21 18:01:07 +00:00
Artturi 8d6a02b049
Merge pull request #146787 from risicle/ris-hmmer-x86_64 2021-11-21 17:46:47 +02:00
Sandro 07f29d2db2
Merge pull request #146829 from r-burns/isx86 2021-11-21 14:20:12 +01:00
github-actions[bot] c68c4b3db8
Merge master into staging-next 2021-11-21 12:01:20 +00:00
7c6f434c b56d7a70a7
Merge pull request #146792 from SuperSandro2000/R 
R: manually fix things after patches got applied
 2021-11-21 08:57:26 +00:00
github-actions[bot] 6ad93ecdbb
Merge master into staging-next 2021-11-21 06:01:18 +00:00
Ryan Burns 2175b157ac treewide: refactor isi686 && isx86_64 -> isx86 2021-11-20 17:50:41 -08:00
Mauricio Collares 1ee4cb8d93
sage: patch test so that new pari warning doesn't cause failures (#4) 2021-11-20 20:13:07 -03:00
Sandro 00a52ef677
R: manually fix things after patches got applied 
This prevents conflicts in case a patch changes the same line
 2021-11-20 21:10:28 +01:00
Robert Scott ec24bab90e hmmer: restrict platforms to x86_64 
technically big-endian powerpc with VMX is also supported, but
on x86, SSE is apparently *required* which means we can't build
a pure i686 version
 2021-11-20 19:17:57 +00:00
AndersonTorres dc2cad8150 gp2c: cosmetical changes 2021-11-19 20:35:16 -03:00
AndersonTorres 3845245d71 pari: 2.13.1 -> 2.13.3 2021-11-19 20:35:16 -03:00
Jonathan Ringer fadaef5aed
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/applications/networking/browsers/chromium/common.nix
 2021-11-19 14:31:57 -08:00
Sandro ab9aa0dfeb
Merge pull request #146668 from rittelle/remove-rittelle 2021-11-19 21:56:17 +01:00
rittelle 4d8d035c6c
Removed rittelle from the maintainer list 2021-11-19 21:29:09 +01:00
Yurii Matsiuk 29ed2bbe02
fricas: fix build 2021-11-19 21:06:44 +01:00
github-actions[bot] 9d44a614de
Merge master into staging-next 2021-11-19 12:01:09 +00:00
Doron Behar 4d28812ef4 qalculate-gtk: 3.20.1 -> 3.21.0 
Add @doronbehar as maintainer to qalculate-gtk and libqalculate.
 2021-11-19 09:15:32 +02:00
github-actions[bot] cf671bd5e9
Merge master into staging-next 2021-11-17 12:01:23 +00:00
Sébastien Maret 7a5f0ec2d1 R: fix build on Darwin 
Closes #146131.
 2021-11-17 11:08:50 +01:00
Sébastien Maret 7eea330318
gildas: 20200901_a -> 20211101_a (#146224) 2021-11-17 01:03:57 -05:00
github-actions[bot] f8cf67790e
Merge master into staging-next 2021-11-17 06:01:28 +00:00
figsoda 6ad04bcb7d
Merge pull request #146243 from figsoda/treewide-rust-feature 
treewide: use buildFeatures and checkFeatures for rust packages
 2021-11-16 21:00:48 -05:00
github-actions[bot] ca7a3ad2e8
Merge master into staging-next 2021-11-16 18:01:14 +00:00
Sandro 0e4ef9ab2b
Merge pull request #139294 from shnarazk/kissat-init 2021-11-16 18:47:19 +01:00
figsoda 2448ef4630 elan: use buildFeatures 2021-11-16 08:11:49 -05:00
figsoda cc0e233801 finalfusion-utils: use buildFeature 2021-11-16 08:11:48 -05:00
github-actions[bot] cfaff97318
Merge staging-next into staging 2021-11-15 18:01:43 +00:00
Gabriel Ebner f4e3542f5d
Merge pull request #146162 from Kha/elan-wrap-lld 
elan: wrap embedded linker
 2021-11-15 18:07:14 +01:00
Sebastian Ullrich f8bbc587eb elan: wrap embedded linker 2021-11-15 17:10:04 +01:00
github-actions[bot] faf5da6aed
Merge staging-next into staging 2021-11-15 12:01:44 +00:00
Mario Rodas f20b2bb9f5
Merge pull request #143551 from r-ryantm/auto-update/scotch 
scotch: 6.0.4 -> 6.1.1
 2021-11-14 21:16:10 -05:00
Mario Rodas c8fb7191ad
Merge pull request #143541 from r-ryantm/auto-update/bcftools 
bcftools: 1.13 -> 1.14
 2021-11-14 21:14:30 -05:00
Robert Scott e4362cea6f monosat, python3Packages.monosat: fix for non-x86 2021-11-14 22:25:09 +00:00
Alyssa Ross 4e1852096f
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 
Conflicts:
	pkgs/development/tools/parsing/flex/2.6.1.nix
 2021-11-14 14:17:46 +00:00
Robert Scott 9149d366b9 boolector: add patch fixing build on aarch64-linux 2021-11-13 19:45:51 -06:00
Robert Scott 3b7766eac2 lingeling: pre1_03b4860d -> pre1_708beb26 2021-11-13 19:45:51 -06:00
Alyssa Ross 26b89bcd16
Merge remote-tracking branch 'nixpkgs/staging-next' into staging 2021-11-13 15:30:01 +00:00
Thomas Watson 1564d88c41 redprl: unstable-2017-03-28 -> unstable-2019-11-04 2021-11-12 19:24:17 -06:00
github-actions[bot] 65356b24bf
Merge staging-next into staging 2021-11-12 18:01:48 +00:00
markuskowa db93862a2c
Merge pull request #145614 from sheepforce/openmolcas 
openmolcas: 21.06 -> 21.10
 2021-11-12 13:26:38 +01:00
Phillip Seeber c810f7befc openmolcas: 20.06 -> 20.10 2021-11-12 11:52:30 +01:00
Phillip Seeber ca7dd700e5 octopus: 10.5 -> 11.2 2021-11-12 11:47:59 +01:00
github-actions[bot] fd8fae936e
Merge staging-next into staging 2021-11-12 06:02:01 +00:00
Dmitry Kalinkin a1b8eb4a30
Merge pull request #144870 from fabaff/fix-cwltool 
cwltool: 3.1.20210628163208 -> 3.1.20211104071347
 2021-11-11 23:41:46 -05:00
github-actions[bot] 40a54af057
Merge staging-next into staging 2021-11-12 00:01:59 +00:00
Thiago Kenji Okada 5259293c10
Merge pull request #144899 from Luz/librepcb-0.1.6 
librepcb: 0.1.5 -> 0.1.6
 2021-11-11 15:06:19 -03:00
github-actions[bot] a4e03b8977
Merge staging-next into staging 2021-11-11 18:01:50 +00:00
Sandro 3260545bc7
Merge pull request #145056 from angustrau/logisim-evolution-3.7.1 2021-11-11 14:01:44 +01:00
Kerstin Humm bb799694db
epoxy: rename to libepoxy 
https://github.com/NixOS/nixpkgs/issues/145040
 2021-11-11 05:55:32 +01:00
xaverdh 03a257e5a3
treewide: quote urls according to rfc 0045 (#145260) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-11-10 11:37:56 +01:00
markuskowa 9995dbad24
Merge pull request #145251 from markuskowa/upd-gromacs 
gromacs: 2021.3 -> 2021.4
 2021-11-09 22:45:05 +01:00
Jörg Thalheim 584c5fc24d
Merge pull request #145161 from smancill/shogun-fix-build 
shogun: refactor derivation and fix build
 2021-11-09 20:49:19 +00:00
Sandro 9a9ef88b8c
Merge pull request #145178 from SuperSandro2000/applications 
Applications
 2021-11-09 21:33:41 +01:00
Sandro Jäckel b1c5442ceb
fixup! prover9: convert patchPhase to postPatch, cleanup meta 2021-11-09 20:26:04 +01:00
Sandro Jäckel 15d85dac80
redprl: switch to fetchFromGitHub, use postPatch 2021-11-09 20:10:31 +01:00
Sandro Jäckel 11c55d061e
prover9: convert patchPhase to postPatch, cleanup meta 2021-11-09 20:10:30 +01:00
Markus Kowalewski 430ad642a2
gromacs: 2021.3 -> 2021.4 2021-11-09 20:10:04 +01:00
Vincent Laporte b42501e1e7 proverif: 2.02pl1 → 2.03 
Do not build `proverif_interact` (that was not installed).
 2021-11-09 17:50:01 +01:00
Angus Trau 14580c7f4d logisim-evolution: 3.5.0 -> 3.7.1 2021-11-09 17:33:19 +11:00
Sebastián Mancilla 203db44ed4 shogun: fix compile errors with Eigen 3.4 
Fixes #142811.
 2021-11-09 00:27:13 -03:00
Sebastián Mancilla 82568e6718 shogun: refactor build 
Main changes are:

- Build with default stdenv instead of forcing GCC 8, by applying upstream
  patches that fix building with newer compilers.

  Together with #134390 and #134393 (and the blas library fixes on #135493
  and #136535), this enables building the derivation on darwin.

- Use multiple outputs.

- Move build-only inputs to nativeBuildInputs.

- Generate the meta examples but do not compile them (they are compiled as
  part of the tests), to not make the build take more time than already is.

  Install the example source files into $doc (but do not install the
  example binaries, only the sources).

- Enable testing by setting the CMake variable CMAKE_SKIP_BUILD_RPATH to
  false (it should not be needed if #108496 is merged). This allows the
  tests to locate the shogun library and run without problems.

  Disable integration and meta tests to speed up the build.

With a few other minor changes:

- Use upstream URL for the json-c patch.

- Be explicit about which optional, commercial dependencies are not used,
  to stop CMake searching for them.

- Do not set NIX_CFLAGS_COMPILE with '-faligned-new' because it causes a
  warning when compiling C files. Set CXXFLAGS instead.

- Remove unnecessary ccache variables from the environment.

- Fix wrong Google Mock download location, which was forcing CMake to need
  network access to download the tarball to the right location (which fails
  within the sandbox).
 2021-11-08 23:57:29 -03:00
Sebastián Mancilla 1e25b1831d shogun: add smancill to maintainers 2021-11-08 23:02:09 -03:00
Sebastián Mancilla 2dd5d704d5 shogun: format derivation 2021-11-08 23:01:59 -03:00
Bruno Bzeznik 4e5a245894 obitools3: removed useless python restriction 2021-11-08 07:51:48 +01:00
Sandro f2c9cf39e5
Merge pull request #145006 from Artturin/spdlogupd 2021-11-07 23:04:28 +01:00
Artturin b4fab0a98b treewide: remove fmt from buildInputs where spdlog is used 
spdlog_1 has fmt_8 in propagatedBuildInputs and having fmt which points
to fmt_7 in buildInputs makes the builds use wrong fmt
 2021-11-07 22:05:08 +02:00
Felix Buehler b52ab3b712 pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
Justin Bedő 7016c7df1c
Merge pull request #144820 from NixOS/r-updates 
R,rPackages: R 4.1.1 -> 4.1.2, rPackages BioC 3.13 -> 3.14
 2021-11-07 08:12:10 +11:00
Matt Christ 065281add0 cemu: mark as broken on darwin 
https://github.com/NixOS/nixpkgs/pull/144889#issuecomment-962469610
 2021-11-06 13:54:44 -07:00
Matt Christ 2771743966 cemu: add link-time-compile-gen, build with gcc9stdenv 2021-11-06 13:54:44 -07:00
Luz 7a51cf9c1d librepcb: 0.1.5 -> 0.1.6 2021-11-06 17:35:58 +01:00
Fabian Affolter 18b531b514 cwltool: 3.1.20210628163208 -> 3.1.20211104071347 2021-11-06 13:01:16 +01:00
Ellie Hermaszewska 03f9ced512
picoscope: 6.14.44 -> 7.0.83 2021-11-06 17:32:49 +08:00
Michael Raskin d8b7d0e066
Merge pull request #123511 from yorickvP/yorick-picoscope 
picoscope: init at 6.14.44-4r5870
 2021-11-06 08:48:13 +00:00
Alyssa Ross 02dfbde639
treewide: use mirror URLs where available 
Candidates identified with

	git grep -F "$(grep -v '#' pkgs/build-support/fetchurl/mirrors.nix |
		grep -v nixos.org | grep :// | cut -d '"' -f 2)"

and then manually reviewed and tested.
 2021-11-06 01:56:39 +00:00
Florian Klink 3097a43496 xmedcon: 0.21.0 -> 0.21.2 
in release 0.21.2 @ 20-Jul-2021 (Gtk+3)

    Small addition in our speedometer CSS theme: window titlebar is now in dark mode too
    Learned how to leave out annoying autotools reconfigure rules from Makefiles via AM_MAINTAINER_MODE macro
        Why? working with most recent autotools version <> older autotools version on most systems <> users are not necessarily developers ...
    Improvements for Wayland (CentOS Stream / OpenSUSE Tumbleweed)
        Menu "Online info" core dumps due to "toplevel" window problem
        Check "Gdk-CRITICAL gdk_monitor_get_workarea: assertion 'GDK_IS_MONITOR ()' failed"
        gtk_window_set_transient_for(window, parent)
        Not working GBC-widget (gamma, brightness, contrast)

in release 0.21.1 @ 01-May-2021 (Gtk+3)

    Require libpng >= 1.6.0 for Ubuntu's sake
    Added in GUI resizing to fifth and quint
    Secured two sprintf() statements
    Updated Inno Setup file for Gtk+3 dependencies
    Fresh update of application icon
    GIF89a: write "XMedCon" in application block
 2021-11-05 15:30:51 +01:00
Florian Klink 0886f51b37 xmedcon: fix meta.platforms 
platforms.darwin and platforms.linux are both lists. They need to be
concatenated, otherwise they're not recognized as supported platforms.
 2021-11-05 15:30:51 +01:00
Mauricio Collares 076563ebac sage: import sympy 1.9 update patch 2021-11-04 18:53:06 +01:00
Justin Bedő a5ac0a33a7
Merge pull request #144529 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.3 -> 2.26.4
 2021-11-04 07:19:02 +11:00
R. Ryantm 509a8c298f picard-tools: 2.26.3 -> 2.26.4 2021-11-03 19:57:00 +00:00
Michael Raskin df3adb0398
Merge pull request #144502 from r-ryantm/auto-update/opensmt 
opensmt: 2.1.1 -> 2.2.0
 2021-11-03 18:23:06 +00:00
R. Ryantm 8fed17e682 opensmt: 2.1.1 -> 2.2.0 2021-11-03 18:03:12 +00:00
Bobby Rong 1c78751423
Merge pull request #144416 from bobby285271/mainprogram 
treewide: set meta.mainProgram for packages teams.pantheon.members maintain
 2021-11-03 20:10:33 +08:00
Bobby Rong 2483e778d4
treewide: set meta.mainProgram for packages teams.pantheon.members maintain 2021-11-03 19:07:21 +08:00
Artturi 0099cd6289
Merge pull request #137636 from bzizou/obitools 2021-11-03 12:30:53 +02:00
Bruno Bzeznik 0d9ec2d3f0 obitools3: fix build on aarch64 + formatting 2021-11-03 11:59:05 +02:00
R. Ryantm 14ee52edff elan: 1.3.0 -> 1.3.1 
(cherry picked from commit 4cb7820ac9)
 2021-11-03 10:51:13 +01:00
Artturi 74f25e606c
Merge pull request #143613 from r-ryantm/auto-update/cytoscape 
cytoscape: 3.8.2 -> 3.9.0
 2021-11-02 14:39:53 +02:00
Artturi 495f6106d5
Merge pull request #144226 from r-ryantm/auto-update/antiprism 
antiprism: 0.26 -> 0.29
 2021-11-02 14:19:37 +02:00
Artturi ff29a7175b
Merge pull request #143618 from r-ryantm/auto-update/dcm2niix 
dcm2niix: 1.0.20210317 -> 1.0.20211006
 2021-11-02 13:58:10 +02:00
R. Ryantm 253e9ecfab antiprism: 0.26 -> 0.29 2021-11-02 11:08:06 +00:00
Justin Bedo 257a939cfc
R: 4.1.1 -> 4.1.2 2021-11-02 17:42:34 +11:00
github-actions[bot] d27dd6653e
Merge master into staging-next 2021-11-02 00:01:32 +00:00
Vincent Laporte f727a6aebe why3: remove spurious camlp5 dependency 2021-11-01 20:37:57 +01:00
Mauricio Collares 89d7336c20 lean: 3.34.0 -> 3.35.0 2021-11-01 19:17:17 +01:00
Mauricio Collares c707a468a4 lean: 3.33.0 -> 3.34.0 2021-11-01 19:17:17 +01:00
github-actions[bot] bd0051cd54
Merge master into staging-next 2021-11-01 18:01:02 +00:00
Gabriel Ebner f13aa788e1 elan: 1.2.0 -> 1.3.0 2021-11-01 13:37:56 +01:00
github-actions[bot] 7eaf56d92e
Merge master into staging-next 2021-11-01 00:01:32 +00:00
Sandro dcc0ba6967
Merge pull request #144043 from Smaug123/lean-darwin 2021-10-31 23:39:39 +01:00
Smaug123 925ab444c9 elan: 1.1.0 -> 1.2.0 
The move to 1.1.0 broke Darwin: the patch introduced during that move
is also required on Darwin, but is hidden behind a Linux-specific
optional. The patch has since made it upstream, so the easiest fix
is simply to upgrade Elan.
 2021-10-31 21:41:38 +00:00
Sandro 254f7f273a
Merge pull request #143798 from evils/kicad-5.1.11 2021-10-31 22:11:41 +01:00
github-actions[bot] f66386e3b1
Merge master into staging-next 2021-10-31 12:01:13 +00:00
Robert Scott b56f93abf9
Merge pull request #143764 from r-ryantm/auto-update/hal-hardware-analyzer 
hal-hardware-analyzer: 3.2.6 -> 3.3.0
 2021-10-31 11:53:35 +00:00
Sergei Trofimovich 597eb07e00 yices: drop symlink hack, avoid ldconfig on linux 
Reported by sternenseemann as a failure on darwin:
https://github.com/NixOS/nixpkgs/pull/141541#discussion_r739634263

Instead of emulating symlink creation in `.nix` file let's create
them in Makefile.build directly in a way that can be upstreamed.
 2021-10-31 09:08:41 +01:00
Evils d44db8ddaa kicad: 5.1.10 -> 5.1.11 2021-10-30 06:32:39 +02:00
R. Ryantm 705e4006ae hal-hardware-analyzer: 3.2.6 -> 3.3.0 2021-10-29 22:20:48 +00:00
R. Ryantm 6282512ef7 dcm2niix: 1.0.20210317 -> 1.0.20211006 2021-10-29 09:34:20 +00:00
R. Ryantm 5ba5ff1a84 cytoscape: 3.8.2 -> 3.9.0 2021-10-29 09:08:26 +00:00
github-actions[bot] e7fbce41fc
Merge master into staging-next 2021-10-29 06:01:10 +00:00
R. Ryantm a5403b9a36 scotch: 6.0.4 -> 6.1.1 2021-10-29 03:59:24 +00:00
R. Ryantm d492837c98 betaflight-configurator: 10.7.0 -> 10.7.1 2021-10-29 03:14:38 +00:00
R. Ryantm 5f6bd8187b bcftools: 1.13 -> 1.14 2021-10-29 02:49:14 +00:00
R. Ryantm 760160e64d bcal: 2.2 -> 2.3 2021-10-29 02:44:23 +00:00
Martin Weinelt da1f248229 Merge remote-tracking branch 'origin/master' into staging-next 2021-10-28 19:51:45 +02:00
Sandro b25f4f082d
Merge pull request #143391 from eduardosm/remove-maintainer 2021-10-28 18:19:06 +02:00
Sandro Jäckel a3286ac6cb
gromacs: fix formatting 2021-10-28 16:47:06 +02:00
Sandro Jäckel face360c08
gromacs: replace lib.lists.optional with lib.optional 2021-10-28 16:46:13 +02:00
Eduardo Sánchez Muñoz 5fdab076f0 maintainers: remove eduardosm 2021-10-28 16:21:46 +02:00
Phillip Seeber e4d824f4e3 gromacs: bool switches for MPI and CUDA 2021-10-28 14:52:30 +02:00
github-actions[bot] ea4da560ff
Merge master into staging-next 2021-10-28 12:01:32 +00:00
Phillip Seeber 19e71dfa87 gromacs: 2020.4 -> 2021.3, cuda, mpi cleanups, performance tunings 
gromacs: dont build double cuda version


gromacs: propagate mpi
 2021-10-28 13:50:39 +02:00
Nikolay Korotkiy 89707c93aa
pcalc: enable on darwin 2021-10-28 12:47:11 +03:00
github-actions[bot] 160c71e060
Merge master into staging-next 2021-10-27 06:01:21 +00:00
Dmitry Kalinkin 4cdfe28fec
Merge pull request #142798 from veprbl/pr/sherpa_2_2_11 
sherpa: 2.2.10 -> 2.2.11
 2021-10-26 20:38:57 -04:00
github-actions[bot] 23c6bab47e
Merge master into staging-next 2021-10-27 00:01:25 +00:00
Sandro 673eb1eb65
Merge pull request #142795 from veprbl/pr/snakemake_6_10_0 2021-10-26 22:21:30 +02:00
github-actions[bot] 9a27efeb34
Merge master into staging-next 2021-10-26 18:01:19 +00:00
Mustafa Çalışkan 66ea992d48
fritzing: 0.9.6 -> unstable-2021-09-22 (#136142) 2021-10-26 17:23:21 +02:00
Dmitry Kalinkin b6ef9916e4
sherpa: 2.2.10 -> 2.2.11 2021-10-24 18:22:59 -04:00
Dmitry Kalinkin 49d19b7945
snakemake: 6.7.0 -> 6.10.0 2021-10-24 17:49:14 -04:00
Jonathan Ringer fc25d94010
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/development/python-modules/jupyter-client/default.nix
	pkgs/development/python-modules/jupyterlab-git/default.nix
 2021-10-22 09:33:07 -07:00
Vincent Laporte 22e732d03c tamarin-prover: 1.6.0 → 1.6.1 2021-10-22 07:38:30 +02:00
Artturi 493094366b
Merge pull request #142164 from jbedo/last 
last: 1179 -> 1256
 2021-10-22 08:37:19 +03:00
Justin Bedő 4e83abb0cb
Merge pull request #142199 from jbedo/picard 
picard-tools: 2.26.2 -> 2.26.3
 2021-10-22 14:36:28 +11:00
Justin Bedő 0689e7368d
Merge pull request #142333 from NixOS/r-updates 
rPackages: update R, CRAN, and BIOC
 2021-10-22 14:33:46 +11:00
Sandro b41a876d6e
Merge pull request #141750 from superherointj/python3-alias-jupyter-client 2021-10-21 21:56:31 +02:00
github-actions[bot] 54a42ab846
Merge master into staging-next 2021-10-21 06:01:21 +00:00
Bobby Rong 85b417446a
Merge pull request #142239 from bcdarwin/update-abella 
abella: 2.0.6 -> 2.0.7
 2021-10-21 08:51:08 +08:00
github-actions[bot] 5808494271
Merge master into staging-next 2021-10-20 00:01:37 +00:00
figsoda d68053da0a
Merge pull request #142256 from evils/kicad-domain 
kicad: use new domain name
 2021-10-19 17:46:19 -04:00
Evils e2ae6cc0f4 kicad: use new domain name 
as the old one is now no longer controlled by the kicad organization
 2021-10-19 23:31:38 +02:00
Ben Darwin 3032353fcb abella: 2.0.6 -> 2.0.7 2021-10-19 13:25:44 -04:00
Vladimír Čunát 01df3cd7dd
Merge branch 'master' into staging-next 2021-10-19 19:24:43 +02:00
Justin Bedo f120d4daf4
picard-tools: 2.26.2 -> 2.26.3 2021-10-19 21:24:56 +11:00
Justin Bedo 08489c40ab
fastp: 0.22.0 -> 0.23.1 2021-10-19 21:09:05 +11:00
Justin Bedo f7414542d0
last: 1179 -> 1256 2021-10-19 13:23:14 +11:00
github-actions[bot] 8863d12326
Merge master into staging-next 2021-10-18 12:01:18 +00:00
Ryan Burns 073fe478e1
Merge pull request #140209 from balodja/openmodelica 
openmodelica: 1.17.0 -> 1.18.0
 2021-10-18 02:06:22 -07:00
Justin Bedo 71eeb7ee56
Merge remote-tracking branch 'origin/master' into r-updates 2021-10-17 21:41:51 +11:00
Justin Bedo 3a0bdda3d9
R: add myself to maintainers 2021-10-17 08:41:58 +11:00
Martin Weinelt a415d5dd2e Merge remote-tracking branch 'origin/master' into staging-next 2021-10-15 23:10:08 +02:00
Théo Zimmermann e242eef8a4 coq_8_14: 8.14+rc1 -> 8.14.0 2021-10-15 18:50:05 +02:00
superherointj 206f3ab323 pythonPackages.jupyter_client: renamed to jupyter-client 2021-10-15 07:51:23 -03:00
Artturi 6d65c1c56d
Merge pull request #141541 from trofi/fix-yices-links 2021-10-15 05:07:49 +03:00
Martin Weinelt adf4e67dd4 Merge remote-tracking branch 'origin/staging' into staging-next 2021-10-15 01:34:36 +02:00
Shadaj Laddad 9d02ea53de cadical: include C++ headers 2021-10-14 15:23:05 -07:00
Michael Raskin ea4c595210
Merge pull request #141612 from vbgl/leo2-1.7.0 
leo2: 1.6.2 → 1.7.0
 2021-10-14 11:01:18 +00:00
Peter Simons 476635afe1 Drop myself from meta.maintainers for most packages. 
I'd like to reduce the number of Github notifications and
review requests I receive.
 2021-10-14 11:01:27 +02:00
Vincent Laporte cafe9f88fc
leo2: 1.6.2 → 1.7.0 
Fix build with recent C++ compilers

Use a more recent OCaml (4.05)
 2021-10-14 09:45:49 +02:00
Alyssa Ross 851b719ac6 treewide: use stdenv.hostPlatform.extensions.sharedLibrary where appropriate 2021-10-13 17:39:37 +00:00
Sergei Trofimovich 0b2d3bbfcb yices: 2.6.3 -> 2.6.2 
2.6.3 is not a stable tag (and is really a 2.6.4 in disguise).
Failure is noticed by vbgl in https://github.com/NixOS/nixpkgs/pull/141241#issuecomment-942103854

The change downgrades from unstable to latest stable release and
adds a check for file presence to prevent upgrade that silently
breaks symlink.
 2021-10-13 17:58:26 +01:00
Théo Zimmermann 3437b543fd coq_8_14: init at 8.14+rc1 2021-10-13 10:44:09 +02:00
Vincent Laporte e31bc3d26a coq2html: 1.2 → 1.3 2021-10-13 10:15:05 +02:00
github-actions[bot] 0bb8cb9c7a
Merge staging-next into staging 2021-10-13 06:01:52 +00:00
Ryan Burns 2df1874125
Merge pull request #141430 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.44 -> 1.8.45
 2021-10-12 17:59:17 -07:00
R. RyanTM f9da99e40d mavproxy: 1.8.44 -> 1.8.45 2021-10-13 00:39:29 +00:00
github-actions[bot] e69f5a133f
Merge staging-next into staging 2021-10-13 00:02:00 +00:00
Sergei Trofimovich b18a746169
yices: 2.6.1 -> 2.6.3 (#141241) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-10-12 23:09:47 +02:00
Sandro 1aac6f3b28
Merge pull request #141302 from felixsinger/pkgs/gtkwave/update 2021-10-12 21:38:24 +02:00
github-actions[bot] 0cb186d33d
Merge staging-next into staging 2021-10-12 18:01:50 +00:00
Vincent Laporte 17e2fbf2dc alt-ergo: 2.4.0 → 2.4.1 2021-10-12 14:41:54 +02:00
github-actions[bot] 7af387291c
Merge staging-next into staging 2021-10-12 12:02:08 +00:00
Sandro 2017c3a883
Merge pull request #141301 from jbedo/samtools 2021-10-12 11:30:07 +02:00
github-actions[bot] 5065827878
Merge staging-next into staging 2021-10-12 00:02:05 +00:00
Felix Singer c1ecf6d2b4 gtkwave: 3.3.110 -> 3.3.111 
Update GTKWave to latest release. Also, reformat default.nix.

Signed-off-by: Felix Singer <felixsinger@posteo.net>
 2021-10-12 01:40:44 +02:00
Justin Bedo 02a1a2b3c8
samtools: 1.11 -> 1.13 2021-10-12 10:19:36 +11:00
Artturi d5ac63708f
Merge pull request #135133 from r-ryantm/auto-update/emuflight-configurator 2021-10-11 21:03:27 +03:00
github-actions[bot] 1b2b1c3d56
Merge staging-next into staging 2021-10-10 00:02:14 +00:00
Gabriel Ebner 9044534a8d elan: 1.0.7 -> 1.1.0 2021-10-09 20:06:10 +02:00
github-actions[bot] 73444b1e90
Merge staging-next into staging 2021-10-09 12:01:44 +00:00
Ryan Burns 5170bbc015
Merge pull request #140689 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.43 -> 1.8.44
 2021-10-09 00:43:10 -07:00
github-actions[bot] 7a3a25044d
Merge staging-next into staging 2021-10-09 00:02:05 +00:00
markuskowa 14ab975a71
Merge pull request #140975 from sheepforce/avogadro2-updates 
avogadro2: 1.94.0 -> 1.95.1
 2021-10-08 22:02:11 +02:00
Phillip Seeber aa02e7f828 avogadro2: initialise a translation repo 2021-10-08 14:43:13 +02:00
Phillip Seeber 181689dfea avogadro2: 1.94.0 -> 1.95.1 2021-10-08 14:26:19 +02:00
github-actions[bot] 5da3c99f54
Merge staging-next into staging 2021-10-08 12:02:03 +00:00
Gabriel Ebner be4d1ca79c
Merge pull request #140916 from andersk/lean 
lean: 3.32.1 → 3.33.0
 2021-10-08 10:37:22 +02:00
Anders Kaseorg 4ce09e0e06 lean: 3.32.1 → 3.33.0 
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2021-10-07 18:54:06 -07:00
github-actions[bot] ae9f8ec1b6
Merge staging-next into staging 2021-10-07 00:02:11 +00:00
Justin Bedő 68f25d5a86
Merge pull request #140170 from marsam/r-hydra 
R: don't restrict hydraPlatforms
 2021-10-07 08:54:26 +11:00
R. RyanTM a1e297d282 mavproxy: 1.8.43 -> 1.8.44 2021-10-06 00:35:56 +00:00
github-actions[bot] 4bbe70b6f4
Merge staging-next into staging 2021-10-06 00:02:16 +00:00
Bruno Bzeznik fe36d93cea siesta: 4.1-b3 -> 4.1.5 2021-10-05 22:46:40 +02:00
github-actions[bot] b7725a001d
Merge staging-next into staging 2021-10-04 18:01:44 +00:00
figsoda 3109ff5765 treewide: avoid use of lib.optional with list in inputs 2021-10-04 13:02:42 -04:00
Narazaki, Shuji 4de6574fb8 kissat: init at 2.0.1 2021-10-04 08:45:36 +09:00
github-actions[bot] 23fbe4eb93
Merge staging-next into staging 2021-10-03 18:01:40 +00:00
Sandro 87180d88f9
Merge pull request #140102 from r-ryantm/auto-update/MAVProxy 2021-10-03 19:20:09 +02:00
github-actions[bot] 9960091b16
Merge staging-next into staging 2021-10-02 18:01:48 +00:00
Alex Martens 5430af2013 dwfv: init at 0.4.1 2021-10-02 09:03:37 -07:00
Vladimir Korolev 72d4a1f13d openmodelica: v1.17.0 -> v1.18.0, add balodja to openmodelica maintainers 2021-10-02 12:39:57 +03:00
Mario Rodas 4662abd3b4 R: don't restrict hydraPlatforms 
The restriction of hydraPlatforms was added in [1: ef05fad51a], but
doesn't seem to be a real reason behind it. R is Free Software and it
take takes a few minutes to build so I believe it can be distributed by
Hydra.

1: 2014-05-04 ef05fad51a
   R: don't restrict meta.platforms to Linux; other architectures should build fine
 2021-10-01 04:20:00 +00:00
R. RyanTM e7ad746486 mavproxy: 1.8.42 -> 1.8.43 2021-10-01 00:38:44 +00:00
github-actions[bot] a92850904c
Merge staging-next into staging 2021-09-30 18:01:43 +00:00
Bobby Rong 8145828985
Merge pull request #134593 from r-ryantm/auto-update/star 
star: 2.7.8a -> 2.7.9a
 2021-09-30 22:39:05 +08:00
github-actions[bot] 2dfffe79b2
Merge staging-next into staging 2021-09-30 00:02:24 +00:00
Austin Seipp d474571392 symbiyosys: 2020.08.22 -> 2021.09.13 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2021-09-29 13:14:27 -05:00
github-actions[bot] ce4a8ae240
Merge staging-next into staging 2021-09-29 18:01:44 +00:00
Sandro 8f7fa26a78
Merge pull request #139309 from Baltoli/bump-z3 2021-09-29 15:00:38 +02:00