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Author SHA1 Message Date
R. RyanTM d5f23bb90a picard-tools: 2.17.11 -> 2.18.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.18.1 with grep in /nix/store/nxd67d6cdp85kjy0g2qg4005rbwdfj75-picard-tools-2.18.1
- directory tree listing: https://gist.github.com/2fdec4f7617ad9bc0dfcd95a91d4abb6
2018-03-30 20:27:46 -07:00
Jörg Thalheim 7d8d5d4f6f
Merge pull request #37670 from bgamari/libngspice
ngspice: Move shared library to a new derivation
2018-03-26 18:33:42 +01:00
Ben Gamari a62fffd9a5 ngspice: Move shared library to a new derivation
It turns out that the build system does not support building both the
command-line tool and the shared library at the same time. Consequently
the ngspice derivation has not provided the command-line tools since the
shared library was enabled in #31166.
2018-03-25 19:55:40 -04:00
Maximilian Bosch 2379cfc4ed
geogebra: add archive.org link for 5-0-444-0
The `geogebra` package is subject to break as upstream removes versioned
packages from their download server when five new releases are comming.

This is why I had to fix almost monthly the package by bumping the
version (these can be found by running `git log --online | grep
geogebra:`). As the package didn't cause any issues for several months
now I guess that using `archive.org` seems to be a suitable solution for
now.

/cc @sternenseemann @matthewbauer
2018-03-25 10:08:43 +02:00
sternenseemann 275cd49731 geogebra: 5-0-382-0 -> 5-0-444-0 2018-03-25 01:51:04 -05:00
Matthew Justin Bauer 8f3091939b
Merge pull request #37752 from ryantm/fix-urls
treewide: use more HTTPS URLs
2018-03-25 00:40:17 -05:00
Ryan Mulligan b189247ba0 treewide: use more HTTPS URLs
Uses the HTTPS url for cases where the existing URL has a permanent
redirect. For each domain, at least one fixed derivation URL was
downloaded to test the domain is properly serving downloads.

Also fixes jbake source URL, which was broken.
2018-03-24 22:04:25 -07:00
Robin Gloster 1b27260a0b
qgroundcontrol: 3.2.7 -> 3.3.0 2018-03-24 12:08:06 +01:00
John Wiegley bee172501d
Merge pull request #37591 from vbgl/coq-88beta1
coq: init at 8.8+beta1
2018-03-23 22:09:06 -07:00
Daiderd Jordan 23d0c17130
picosat: fix darwin build
/cc ZHF #36454
2018-03-24 02:11:58 +01:00
Matthew Justin Bauer 64a1fd6c69
Merge pull request #37224 from matthewbauer/auto-update/jags
jags: 4.1.0 -> 4.3.0
2018-03-21 23:42:39 -05:00
Austin Seipp 011e70155b symbiyosys: 2018.03.07 -> 2018.03.21
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-03-21 16:05:10 -05:00
Ryan Mulligan 8f75a58081 verilator: 3.920 -> 3.922
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin_dbg -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin_dbg --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage_bin_dbg -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage_bin_dbg --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_profcfunc help` got 0 exit code
- found 3.922 with grep in /nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922
- directory tree listing: https://gist.github.com/04b5044a54bb4ff549696cbcd57cd88e
2018-03-21 13:09:37 -05:00
Vincent Laporte 6845b248d9 coq: init at 8.8+beta1 2018-03-21 18:06:28 +00:00
Matthew Justin Bauer 7452996ac6
Merge pull request #36381 from bgamari/bump-kicad
kicad-unstable: Bump git commit
2018-03-19 15:28:58 -05:00
Matthew Justin Bauer 964c32bcb3
Merge pull request #36846 from jbedo/snpeff
snpeff: 4.3t -> 4.3q
2018-03-19 12:26:33 -05:00
Jörg Thalheim 6e22dd9ee8
Merge pull request #37356 from volth/gephi-from-sources
gephi: build from sources
2018-03-19 11:23:43 +00:00
Matthew Justin Bauer 9f58d17d10
Merge pull request #37079 from ryantm/auto-update/picard-tools
picard-tools: 2.17.10 -> 2.17.11
2018-03-19 04:04:50 -05:00
volth 1e2eec169a gephi: build from sources 2018-03-19 08:45:24 +00:00
Matthew Justin Bauer 04e6a14df4
Merge pull request #36744 from samdroid-apps/add-nasc
nasc: init at 0.4.6
2018-03-19 03:41:24 -05:00
Gabriel Ebner faf094adef
Merge pull request #36435 from timokau/origin/ecm-update
ecm: 6.4.4 -> 7.0.4
2018-03-18 13:08:34 +01:00
Gabriel Ebner 7072d11391
Merge pull request #37194 from ryantm/auto-update/gp2c
gp2c: 0.0.10 -> 0.0.10pl1
2018-03-18 12:04:08 +01:00
Gabriel Ebner 5693c5da8e
Merge pull request #36986 from ryantm/auto-update/fricas
fricas: 1.3.2 -> 1.3.3
2018-03-17 13:56:26 +01:00
Gabriel Ebner 5df4f227ec
Merge pull request #37009 from ryantm/auto-update/igv
igv: 2.4.8 -> 2.4.9
2018-03-17 13:43:23 +01:00
Gabriel Ebner fe7d82e6a6
Merge pull request #36933 from Ma27/fix-aspino
aspino: fix build
2018-03-17 13:06:23 +01:00
Maximilian Bosch 29bc0a00a1
aspino: fix build
Aspino patched `libglucose` for their own uses, however they currently
depend on glucose v4.0.
(see e31c3b4e57/patches)

The patches don't apply properly on `glucose-4.1` anymore, furthermore
the new source directory caused the `bootstrap.sh` from `aspino` which
was supposed to apply the patches and recompile the setup to break.

Furthermore some minor changes to the derivation were introduced:

- upgraded from `2016-01-31` to `2017-03-09`
- the name contains an `-unstable-` infix as upstream has no releases
- instead of a `patchPhase` the `postPatch` hook will be used for
  `substituteInPlace` to keep advanced patching features from `nixpkgs`
  available.
- `patchShebangs` will be called to avoid impurities because of the
  implicit reliance on `/bin/sh`
- added myself as second maintainer to have more people available in
  case of any further breackage

See https://hydra.nixos.org/build/70688471/log
See ticket #36453
2018-03-17 13:02:51 +01:00
Matthew Bauer e2d12274c2 jags: 4.1.0 -> 4.3.0
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:
- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 4.3.0 with grep in /nix/store/aw897502z5bcn6dw6rp7jca90flfrjab-JAGS-4.3.0
2018-03-17 02:02:11 -05:00
Austin Seipp c108e67825
Merge pull request #37063 from ryantm/auto-update/ltl2ba
ltl2ba: 1.1 -> 1.2b1
2018-03-16 17:12:02 -05:00
Ryan Mulligan 3e2f544c39 gp2c: 0.0.10 -> 0.0.10pl1
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -h` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -v` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -h` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run -h` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run --help` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run -h` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run --help` and found version 0.0.10pl1
- found 0.0.10pl1 with grep in /nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1
- directory tree listing: https://gist.github.com/27f1364bf90110b801070fcb28c64e0e
2018-03-16 12:51:03 -07:00
Peter Simons 276001c51b
Merge pull request #37180 from peti/r-updates
Update R and its packages
2018-03-16 17:37:19 +01:00
Tuomas Tynkkynen ef64208eba Merge commit '3ab2949' from staging into master
Conflicts:
	pkgs/development/compilers/llvm/6/llvm.nix
	pkgs/servers/home-assistant/component-packages.nix
2018-03-15 22:30:56 +02:00
Peter Simons d46a4b9829 R: 3.4.3 -> 3.4.4 2018-03-15 18:32:14 +01:00
Ryan Mulligan 892244dda0 picard-tools: 2.17.10 -> 2.17.11
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.17.11 with grep in /nix/store/xmlvcz212yl8bij12jpqibhv8c8mqabs-picard-tools-2.17.11
- found 2.17.11 in filename of file in /nix/store/xmlvcz212yl8bij12jpqibhv8c8mqabs-picard-tools-2.17.11
2018-03-15 01:16:28 -07:00
Ryan Mulligan 9e0ce6562a ltl2ba: 1.1 -> 1.2b1
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 1.2b1 in filename of file in /nix/store/jx5s7w6bmd6lfqvxl2lly3ggd4k9ncax-ltl2ba-1.2b1
2018-03-14 21:06:53 -07:00
Joachim F 51474dbf7c
Merge pull request #36627 from ryantm/auto-update/ngspice
ngspice: 26 -> 27
2018-03-14 21:13:22 +00:00
Joachim F c1ce856fa4
Merge pull request #36591 from ryantm/auto-update/gtkwave
gtkwave: 3.3.86 -> 3.3.87
2018-03-14 21:04:51 +00:00
Joachim F b46fe9398b
Merge pull request #36658 from ryantm/auto-update/paml
paml: 4.9c -> 4.9g
2018-03-14 20:20:47 +00:00
Joachim F d703988c2b
Merge pull request #36483 from ryantm/auto-update/calc
calc: 2.12.6.3 -> 2.12.6.6
2018-03-14 19:37:27 +00:00
Ryan Mulligan 9b4c82d366 igv: 2.4.8 -> 2.4.9
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.4.9 with grep in /nix/store/q5c9jyg6gc4v3ns7rw5lxj7v4v916a7f-igv-2.4.9
- found 2.4.9 in filename of file in /nix/store/q5c9jyg6gc4v3ns7rw5lxj7v4v916a7f-igv-2.4.9
2018-03-14 12:04:23 -07:00
Ryan Mulligan bf06f445dd fricas: 1.3.2 -> 1.3.3
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/fricas -h` got 0 exit code
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/fricas -h` and found version 1.3.3
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/efricas --help` got 0 exit code
- found 1.3.3 with grep in /nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3
2018-03-14 08:04:41 -07:00
Tuomas Tynkkynen 2fec9c6e29 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/development/tools/build-managers/conan/default.nix
2018-03-13 23:04:18 +02:00
volth 7ec0471242 treewide: s/xlibs/xorg/g (#36889) 2018-03-13 10:16:03 +00:00
Daiderd Jordan a6bf2b21d5
Merge pull request #36873 from jfrankenau/update-bcal
bcal: 1.7 -> 1.8
2018-03-12 19:49:20 +01:00
Johannes Frankenau 59cc47d802 bcal: 1.7 -> 1.8
The tests failed for a good reason on Darwin and should not have been
disabled. The issue has been resolved upstream with version 1.8 which
now also supports AArch64.
2018-03-12 18:36:26 +01:00
Vincent Laporte 903f4dd3d4
clingo: fix build on non-sandboxed darwin 2018-03-12 17:07:18 +00:00
Vincent Laporte eedc173276
clingo: fix URL 2018-03-12 16:51:54 +00:00
Michael Raskin fafeac185b tptp: 7.0.0 -> 7.1.0 2018-03-12 16:58:21 +01:00
Justin Bedo f48ff649fe
snpeff: 4.3t -> 4.3q 2018-03-12 16:03:44 +11:00
Jan Malakhovski 7079e744d4 Merge branch 'master' into staging
Resolved the following conflicts (by carefully applying patches from the both
branches since the fork point):

   pkgs/development/libraries/epoxy/default.nix
   pkgs/development/libraries/gtk+/3.x.nix
   pkgs/development/python-modules/asgiref/default.nix
   pkgs/development/python-modules/daphne/default.nix
   pkgs/os-specific/linux/systemd/default.nix
2018-03-10 20:38:13 +00:00
Michael Raskin d44221d768
Merge pull request #36726 from ryantm/auto-update/yarp
yarp: 2.3.68 -> 2.3.70.2
2018-03-10 18:41:05 +00:00