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Author SHA1 Message Date
Justin Bedo 4c2d75f58c
R: unmark edgeR and limma as broken 2017-02-24 15:52:10 +11:00
Justin Bedo 4bb8727284
R: 3.2.4 -> 3.3.2 2017-02-24 15:22:12 +11:00
Will Dietz 2f303bc10e R/generate-shell: Use R from current tree, fix missing wget dep. 
Without this change, the 'R' version used might be the wrong
one which changes the package lists used.

Fixes #19530.
 2017-02-23 07:46:20 -06:00
Luke Gorrie a000ec038e r-modules/README.md: mention generate-shell.nix 2017-02-22 04:48:50 +00:00
Eelco Dolstra 9d6a55aefd
~/.nixpkgs -> ~/.config/nixpkgs 
The former is still respected as a fallback for config.nix for
backwards compatibility (but not for overlays because they're a new
feature).
 2017-02-01 16:07:55 +01:00
Chris Hodapp 7638578342 RStudio: Optionally allow packages from custom R environment 
https://nixos.org/nixpkgs/manual/#r-packages contains a method for
setting up an R environment with a specific set of libraries, and it
creates an R wrapper which points R to those libraries.

The package RStudio relies on the standard R package, which then
cannot access any of the libraries specified in a custom R
environment.  While one may easily use pkgs.rstudio.override to change
rstudio's R dependency to the custom R environment, this accomplishes
nothing because while RStudio runs the correct R wrapper it clears out
the environment variable R_LIBS_SITE - and so it is still unable to
use any of those packages.

In order to work around this problem, these changes allow the user to
optionally modify rstudio's wrapper to set environment variable
R_PROFILE_USER to an R script which sets R's .libPaths(..) to point to
the same libraries; that script is generated from R_LIBS_SITE in the R
wrapper.

By default, this change has no effect.  If R is overridden to
something else, and if useRPackages is changed from its default of
false, then the change described above is made; for instance:

{
  packageOverrides = pkgs: let self = pkgs.pkgs; in
  rec {
    rEnv = pkgs.rWrapper.override {
      packages = with self.rPackages; [
        dplyr ggplot2 e1071 rpart reshape
      ];
    };
    rstudioEnv = pkgs.rstudio.override { R = rEnv; useRPackages = true; };
  };
}
 2017-01-27 18:54:50 -05:00
mimadrid 8954412fcc
r-modules: fix snpStats package 2017-01-06 21:07:25 +01:00
mimadrid b5a0925663
r-modules: fix VariantAnnotation package 2017-01-06 21:07:25 +01:00
mimadrid 6540b6507d
r-modules: fix rtracklayer package 2017-01-06 21:07:25 +01:00
mimadrid baf65d5000
r-modules: fix Rsubread package 2017-01-06 21:07:25 +01:00
mimadrid 9ebab25442
r-modules: fix gmapR package 2017-01-06 21:07:25 +01:00
mimadrid 286e86f3a5
r-modules: fix oligo package 2017-01-06 21:07:25 +01:00
mimadrid afd1a4c933
r-modules: fix affyio package 2017-01-06 21:07:25 +01:00
mimadrid 4c0c3c7493
r-modules: fix BitSeq package 2017-01-06 21:07:24 +01:00
mimadrid 272b447ea7
r-modules: fix bamsignals package 2017-01-06 21:07:24 +01:00
mimadrid c5e4754ca7
r-modules: fix affyPLM package 2017-01-06 21:07:24 +01:00
mimadrid 1d7fd8f3c4
r-modules: fix xml2 package 2017-01-06 21:07:24 +01:00
mimadrid 5b813c2ab0
r-modules: fix XBRL package 2017-01-06 21:07:24 +01:00
mimadrid 512be9e14a
r-modules: fix WhopGenome package 2017-01-06 21:07:24 +01:00
mimadrid f9d84f8b65
r-modules: fix tkrplot package 2017-01-06 21:07:24 +01:00
mimadrid 0b3e62bb12
r-modules: fix tiff package 2017-01-06 21:07:23 +01:00
mimadrid 9420fa23c6
r-modules: fix TAQMNGR package 2017-01-06 21:07:23 +01:00
mimadrid 2303e63116
r-modules: fix spate package 2017-01-06 21:07:23 +01:00
mimadrid fcbed4b654
r-modules: fix showtext package 2017-01-06 21:07:23 +01:00
mimadrid 8a6b58d51d
r-modules: fix seqminer package 2017-01-06 21:07:23 +01:00
mimadrid e1a5eeef06
r-modules: fix seqinr package 2017-01-06 21:07:22 +01:00
mimadrid 1ef67b9e78
r-modules: fix RVowpalWabbit package 2017-01-06 21:05:54 +01:00
mimadrid ae2723a144
r-modules: fix rtiff package 2017-01-06 21:05:54 +01:00
mimadrid d7ac90dd0c
r-modules: fix rtfbs package 2017-01-06 21:05:53 +01:00
mimadrid fd175e4084
r-modules: fix Rssa package 2017-01-06 21:05:52 +01:00
mimadrid bd2aaada6e
r-modules: fix RSclient package 2017-01-06 21:05:52 +01:00
mimadrid 53235dbe14
r-modules: fix rphast package 2017-01-06 21:05:52 +01:00
mimadrid 780fb79e32
r-modules: fix Rmpfr package 2017-01-06 21:05:51 +01:00
mimadrid a58db75ccb
r-modules: fix rmatio package 2017-01-06 21:05:51 +01:00
mimadrid 674a2077dd
r-modules: fix rJava package 2017-01-06 21:05:51 +01:00
mimadrid 13a582688f
r-modules: fix RJaCGH package 2017-01-06 21:05:51 +01:00
mimadrid 9922867fa8
r-modules: fix Rhtslib package 2017-01-06 21:05:50 +01:00
mimadrid bb60f939ae
r-modules: fix Rhpc package 2017-01-06 21:05:50 +01:00
mimadrid e1bc505da9
r-modules: fix rggobi package 2017-01-06 21:05:50 +01:00
mimadrid 9f2b5e0425
r-modules: fix RGtk2 package 2017-01-06 21:05:50 +01:00
mimadrid 3342f8bd59
r-modules: fix RcppOctave package 2017-01-06 21:05:50 +01:00
mimadrid ba86a39645
r-modules: fix RcppCNPy package 2017-01-06 21:05:49 +01:00
mimadrid dd159d06b6
r-modules: fix rcdd package 2017-01-06 21:05:49 +01:00
mimadrid 8b229baf33
r-modules: fix rbamtools package 2017-01-06 21:05:49 +01:00
mimadrid 558f67e85f
r-modules: fix R2SWF package 2017-01-06 21:05:48 +01:00
mimadrid 277efe9896
r-modules: fix sysfonts package 2017-01-06 21:05:48 +01:00
mimadrid 062c9037d1
r-modules: fix PopGenome package 2017-01-06 21:05:48 +01:00
mimadrid c5ef08cc65
r-modules: fix PKI package 2017-01-06 21:05:48 +01:00
mimadrid 1e9071948f
r-modules: fix mwaved package 2017-01-06 21:05:48 +01:00
mimadrid 4e7de52c26
r-module: fix kza package 2017-01-06 21:05:47 +01:00
mimadrid debb12ce1a
r-module: fix jpeg package 2017-01-06 21:05:47 +01:00
mimadrid e3a2c97c7b
r-modules: fix gmp package 2017-01-06 21:05:47 +01:00
mimadrid 72eb6a8644
r-modules: fix fftwtools package 2017-01-06 21:05:47 +01:00
mimadrid 427c4d954a
r-modules: fix fftw package 2017-01-06 21:05:47 +01:00
mimadrid b88b8ea05b
r-modules: fix devEMF package 2017-01-06 21:05:47 +01:00
mimadrid 6c6aab3e5b
r-modules: fix cairoDevice package 2017-01-06 21:05:47 +01:00
mimadrid f717538866
r-modules: fix git2r package 2017-01-06 21:05:47 +01:00
mimadrid 88fcfafafe
r-modules: fix BayesXsrc package 2017-01-06 21:05:46 +01:00
mimadrid 6f9124e118
r-modules: fix Cairo package 2017-01-06 21:05:46 +01:00
mimadrid 321d5a01b6
r-modules: fix seewave package 2017-01-06 16:31:30 +01:00
Mike Sperber 6c226b1e7a rPackages.DescTools: unbreak build outside of Linux. (#20787) 
DescTools does not require X during build, so remove it from that list.
 2016-12-13 16:25:44 +01:00
Andreas Herrmann 98fce78cb3 r-modules: Fix png package 
The package requires the `dev` output of `libpng`.
 2016-12-12 10:53:10 +01:00
Langston Barrett 2b300c9bef r-modules: add more environment documentation 
Use nix-shell with a `default.nix` rather than using
config.nix
 2016-10-13 22:18:16 +00:00
Andreas Herrmann cf3a2e99ad r-modules: edgeR is broken due to broken url 2016-09-27 17:47:16 +02:00
Andreas Herrmann 54915ecf0d r-modules: Fix h5 and rhdf5 
and some packages that depend on them.
 2016-09-27 17:46:06 +02:00
Peter Simons 23c122d277 r-openssl: fix build some more 2016-09-10 12:28:13 +02:00
Peter Simons 1196540a1d r-openssl: fix build 2016-09-09 15:13:07 +02:00
Peter Simons fe0256cd01 r-curl: fix build 2016-09-09 15:12:54 +02:00
Peter Simons b2113f7893 r-XML: fix build 2016-09-09 14:36:49 +02:00
Thomas Tuegel 787875c287
r-stringi: fix build by including icu.dev output 2016-09-07 17:19:20 -05:00
Tuomas Tynkkynen 2258b21e4b treewide: Add lots of platforms to packages with no meta 
Build-tested on x86_64 Linux and on Darwin.
 2016-08-02 21:17:44 +03:00
Michael Stone c1d24efd6a darwin: R: provide gettext and gfortran as buildInputs on Darwin. 
As discussed in #10623, many R modules fail to build on Darwin without the
libraries and compilers provided by these packages.

For more detail, please see comment:

  https://github.com/NixOS/nixpkgs/pull/10623#issuecomment-172375342
 2016-07-22 13:31:40 -04:00
Ben Darwin a896233396 jags: 3.4.0 -> 4.1.0 (#16804) 
* jags: 3.4.0 -> 4.1.0
* unbreak rjags and dependent packages
 2016-07-18 13:11:18 +02:00
Tuomas Tynkkynen 2a73de6e6c treewide: Make explicit that 'dev' output of openssl is used 2016-05-19 10:02:23 +02:00
Tuomas Tynkkynen 3f8b08f506 treewide: Make explicit that 'dev' output of mpfr is used 2016-05-19 10:00:49 +02:00
Tuomas Tynkkynen b465dc202f boost: Kill unnecessary 'lib' output 
This was split in somewhere pre-2014 without the current infra which
automates parts of this, in particular the output propagation.
 2016-04-28 00:41:28 +03:00
Peter Simons a6978ded09 Merge pull request #14144 from jefdaj/r-bioc-data-packages 
r-modules: update CRAN, add Bioconductor data packages
 2016-04-15 14:46:19 +02:00
Jeffrey David Johnson 2291885f9e mark bioc packages broken; should match hydra now 2016-04-14 14:34:11 -07:00
Jeffrey David Johnson f88843f545 mark bioc packages broken; should match hydra now 2016-04-14 09:54:46 -07:00
Jeffrey David Johnson 2f6581df00 r-modules: mark mzR broken 2016-04-12 14:16:43 -07:00
Jeffrey David Johnson 2ceec79ad5 work on fixing up bioconductor packages 2016-03-31 16:16:34 -07:00
Jeffrey David Johnson 3c0fb5ede1 work on fixing up bioconductor packages 2016-03-31 11:36:39 -07:00
Jeffrey David Johnson c9934bbcb8 work on fixing up bioconductor packages 2016-03-31 11:17:21 -07:00
Jeffrey David Johnson 518fd135ed work on fixing up bioconductor packages 2016-03-27 23:14:24 -07:00
Jeffrey David Johnson e98a231af8 work on fixing up bioconductor packages 2016-03-26 11:26:29 -07:00
Jeffrey David Johnson 05fc143451 work on fixing up bioconductor packages 2016-03-25 09:15:02 -07:00
Jeffrey David Johnson 1911d4925e work on fixing up bioconductor package 2016-03-25 00:30:20 -07:00
Jeffrey David Johnson 4cd2202918 work on fixing up bioconductor packages 2016-03-24 14:51:21 -07:00
Jeffrey David Johnson 66bcbfb93d r-modules: update CRAN, add Bioconductor data pkgs 2016-03-22 22:50:54 -07:00
Vladimír Čunát 09af15654f Merge master into closure-size 
The kde-5 stuff still didn't merge well.
I hand-fixed what I saw, but there may be more problems.
 2016-03-08 09:58:19 +01:00
Michel Kuhlmann 312494180d nixpkgs manual: add basic R documentation, fixes #13362 
also fixes #13243
 2016-02-22 10:16:06 +01:00
Vladimír Čunát ae74c356d9 Merge recent 'staging' into closure-size 
Let's get rid of those merge conflicts.
 2016-02-03 16:57:19 +01:00
Tuomas Tynkkynen 555292017e treewide: Mass replace 'xorg.libXft}/lib' to refer the 'out' output 2016-01-24 10:03:37 +02:00
Tobias Geerinckx-Rice 32d40f0f98 Remove no longer (or never) referenced patches 
55 files changed, 6041 deletions. Tested with `nix-build -A tarball`.
 2016-01-24 02:02:21 +01:00
Vladimír Čunát 716aac2519 Merge branch 'staging' into closure-size 2016-01-19 09:55:31 +01:00
Asko Soukka a225a650bf R: fix Darwin build 
Merged manually from https://github.com/NixOS/nixpkgs/pull/10623.
 2016-01-06 22:20:40 +01:00
Michel Kuhlmann 26f80d7a6f r-modules: update list of broken packages 
Closes https://github.com/NixOS/nixpkgs/pull/12181.
 2016-01-06 21:50:36 +01:00
Michel Kuhlmann 4c3d76d3c8 r-modules: regenerate CRAN packages 2016-01-04 09:19:24 +01:00
Vladimír Čunát f9f6f41bff Merge branch 'master' into closure-size 
TODO: there was more significant refactoring of qtbase and plasma 5.5
on master, and I'm deferring pointing to correct outputs to later.
 2015-12-31 09:53:02 +01:00
Peter Simons 3a8112f7da r-modules: prefer gsl 1.x since 2.x is unsupported by r-gsl-1.9.x 2015-12-29 21:22:59 +01:00
Luca Bruno a412927924 Merge remote-tracking branch 'origin/master' into closure-size 2015-11-25 21:37:30 +01:00
Peter Simons de02462a36 r-modules: update list of broken packages 2015-11-25 11:39:28 +01:00
Nikolay Amiantov bd4297dc4d r-modules: regenerate CRAN, BIOC and IRKernel 2015-11-25 11:39:28 +01:00
Nikolay Amiantov 287f99bada r-modules: use HTTPS, allow passing args from generated set, use MRAN 2015-11-25 11:39:28 +01:00
Peter Simons fa5de61315 r-tikzDevice: update to new texlive 2015-11-24 17:30:28 +01:00
Vladimír Čunát 333d69a5f0 Merge staging into closure-size 
The most complex problems were from dealing with switches reverted in
the meantime (gcc5, gmp6, ncurses6).
It's likely that darwin is (still) broken nontrivially.
 2015-11-20 14:32:58 +01:00
Peter Simons d7e6a46770 r-modules: update list of broken builds to avoid Hydra errors 2015-11-18 15:23:46 +01:00
Michel Kuhlmann cab1f3de5e R: regenerate CRAN packages 2015-11-17 14:34:27 +01:00
Asko Soukka d8e3a981c5 r-modules: init IRkernel packages 2015-10-30 03:48:23 +02:00
Vladimír Čunát 99e4371526 curl: split into multiple outputs 
Also use pkgconfig to be safer and fix (some) referrers.
 2015-10-13 20:18:48 +02:00
Michel Kuhlmann ec8f31d26c R: fix some modules with configure-shebang-error 
- xml2: fix configure script
- rversion, devtools: mark as unbroken
  dependency R-curl was fixed in 513e31185b
 2015-10-12 10:02:48 +02:00
Peter Simons 7c516259e7 r-modules: update list of broken packages 2015-10-05 14:15:41 +02:00
Vladimír Čunát 38313d5d87 libxml2,libxslt: split into multiple outputs 
Fixed all references, hopefully.
libxml2Python is slightly hacky now, but it seems to work.
 2015-10-05 13:44:16 +02:00
Karn Kallio 94629aa57d R: regenerate CRAN and BIOC packages 2015-10-04 20:06:49 +02:00
Nikolay Amiantov 513e31185b R-curl: fix configure script 2015-10-04 20:06:49 +02:00
Vladimír Čunát 88c9f8b574 xlibs: replace occurrences by xorg 
This seems to have been confusing people, using both xlibs and xorg, etc.
- Avoided renaming local (and different) xlibs binding in gcc*.
- Fixed cases where both xorg and xlibs were used.
Hopefully everything still works as before.
 2015-09-15 12:54:34 +02:00
Vladimír Čunát 21e3ff658a x11: replace its usage by xlibsWrapper directly 
Scilab note: the parameters already had pointed to nonexistent dirs
before this set of refactoring. But that config wasn't even used by
default.
 2015-09-15 12:08:24 +02:00
Bjørn Forsman 22321f2e58 cudatoolkit: don't move $out/include to $out/usr_include 
This effectively reverts 86c283824f
("If cuda headers are presented to nix [...]") and all the following
workarounds that was added due to that commit.

As far as I can tell[1] this hack isn't needed anymore. And moving
includes to $out/usr_include causes pain for cudatoolkit users, so
better get rid of it.

In patches that did more than the $out/usr_include workaround, I only
changed the line back to $out/include instead of re-generating the
patches and fully removing the changed line.

[1]: I build tested blender and caffe, and temporarily added
recurseIntoAttrs to rPackages and haskellPackages so that nox-review
could get proper coverage. However, many of the packages do not build
even before this patch. I also built CUDA samples with cudatoolkit7
that ran fine.
 2015-09-10 10:35:40 +02:00
Peter Simons 5d1bcf2f4e R: fix Hydra build & evaluation errors 2015-08-06 20:13:50 +02:00
Peter Simons 36fc26c0fc R: regenerate CRAN and BIOC packages 2015-08-06 20:13:50 +02:00
Peter Simons 7a0fa8f898 r-modules: fix evaluation errors 2015-08-06 20:13:49 +02:00
Michel Kuhlmann 18cff91fb7 R: regenerate CRAN and BIOC packages 
Closes https://github.com/NixOS/nixpkgs/pull/9037.
 2015-08-06 20:13:49 +02:00
Peter Simons 73ad191afb r-modules: fix Hydra evaluation errors 2015-08-06 20:13:49 +02:00
Nikolay Amiantov e3461ce259 rPackages.stringi: add ICU data tables 2015-07-28 12:33:29 +03:00
Peter Simons b59685de83 r-stringi: fix build 2015-07-12 02:38:42 +02:00
Michel Kuhlmann bb2b683e63 R: regenerate CRAN and BIOC packages 2015-07-09 14:52:17 +02:00
Peter Simons bb42c215e2 R: improve support for CRAN and Bioconductor package sets 
- Update the instructions for re-generating each of the package set files.
 - Provide test-evaluation.nix expression to verify that the package sets evaluates.
 - Update list of known broken packages.
 2015-06-17 23:19:56 +02:00
Jeffrey David Johnson 93a742fd28 R: add support for Bioconductor packages 2015-06-17 23:19:56 +02:00
Peter Simons 362e60a5dc r-modules: fix rapportools 2015-06-16 12:48:50 +02:00
Peter Simons 21c18c4f0a r-modules: fix rapport 2015-06-16 12:48:50 +02:00
Peter Simons ccd6988b3d r-modules: fix xml2 2015-06-16 12:48:50 +02:00
Peter Simons 8ac6350ce7 r-modules: fix pander 2015-06-16 12:48:50 +02:00
Peter Simons 9fc5317055 r-modules: fix curl 2015-06-16 12:48:50 +02:00
Peter Simons d4c810cccd r-modules: disable broken packages to avoid Hydra evaluation errors 2015-06-16 12:48:49 +02:00
Peter Simons b667cb6163 Merge pull request #8298 from abbradar/r-updates 
R updates
 2015-06-15 20:31:57 +02:00
Nikolay Amiantov 29779ae642 R: regenerate CRAN packages 2015-06-12 03:44:39 +03:00
Nikolay Amiantov 9bb5e7edbd generate-cran-packages: make executable 2015-06-12 03:44:38 +03:00
Thomas Tuegel 8245caedf1 rPackages.SamplerCompare: build with openblas 2015-06-09 11:47:40 -05:00
Thomas Tuegel 58754130cc rPackages.slfm: build with openblas 2015-06-09 11:47:26 -05:00
Thomas Tuegel 77aa1c990e rPackages.Mposterior: build with openblas 2015-06-09 11:47:12 -05:00
Thomas Tuegel b120a737fd rPackages.BayesLogit: build with openblas 2015-06-09 11:43:00 -05:00
Peter Simons 949746f9f5 r-modules: disable broken builds 2015-05-15 13:48:38 +02:00
Peter Simons 278df52729 r-xml2: fix build 2015-05-15 13:47:27 +02:00
Peter Simons aaa9f837a9 r-modules: fix Hydra evaluation errors 2015-05-13 11:31:39 +02:00
Michel Kuhlmann aabee7eb46 r-modules: regenerate 2015-05-11T14:48:00+0100 2015-05-12 07:47:41 +02:00
Peter Simons e313cd711e r-modules: disable broken builds on Hydra 2015-04-20 17:38:46 +02:00
Peter Simons 0b088ce581 r-modules: revert "disable builds that depend on broken gdal library" 
This reverts commit 9e9b5e6e69. gdal has
been fixed in 1645795c53.
 2015-04-19 17:52:50 +02:00
Peter Simons 9e9b5e6e69 r-modules: disable builds that depend on broken gdal library 2015-04-17 20:02:46 +02:00
Michel Kuhlmann cc5f5f0fd3 r-modules: update from CRAN state at 2015-04-16T11:23:00+0100 
Closes https://github.com/NixOS/nixpkgs/pull/7411.
 2015-04-17 15:38:12 +02:00
William A. Kennington III 758319f67f One more mysql fix 2015-04-01 16:52:38 -07:00
Peter Simons aed1895643 r-modules: remedy remaining Hydra failures 2015-03-29 00:17:55 +01:00
Peter Simons f6886c62dc r-modules: disable broken builds on Hydra 2015-03-28 10:36:54 +01:00
Michel Kuhlmann c96bc1e507 r-modules: fixing rggobi by adding initial expression for ggobi 2015-03-26 12:20:07 +01:00
Peter Simons 5238bfb73f r-modules: fix evaluation errors 2015-03-21 23:33:50 +01:00
Peter Simons 701251e435 r-modules: update from CRAN state at 2015-03-21T20:01:16+0100) 2015-03-21 23:33:50 +01:00
Joachim Fasting 0e52c562b5 RAppArmor: use AppArmor 2.9 2015-03-19 14:14:28 +01:00
Peter Simons d388855731 r-SID: mark broken 2015-03-09 21:14:00 +01:00
Peter Simons e8b33876af r-Cell: drop obsolete package 2015-03-09 16:43:37 +01:00
Peter Simons a591dbac3b r-modules: update from CRAN state at 2015-03-09T16:32:24+0100 2015-03-09 16:37:05 +01:00
Peter Simons eaf728c3d3 r-modules: fix git2r, TAQMNGR, and WhopGenome 2015-03-06 11:21:21 +01:00
Peter Simons 030bd26af3 r-modules: mark daff and rjade broken 2015-03-04 12:51:43 +01:00
Adam Vogt 2397f96d92 CRAN MASS_7.3-39 was uploaded twice, so use the newer checksum 
The two dates are:

Packaged: 2015-02-20 08:29:38 UTC; ripley
Packaged: 2015-02-24 10:34:20 UTC; ripley

There were with changes to tests/Examples/MASS-Ex.Rout.save,
but the rest of the code seems unaffected.
 2015-02-26 19:16:55 -05:00
Adam Vogt 5adab4cbc9 remove some packages marked broken for cran-packages.nix 
those packages were removed from cran (and cran-packages.nix)
 2015-02-26 16:17:15 -05:00
Adam Vogt f8d0a412d6 update cran packages 2015-02-25 17:50:42 -05:00
Adam Vogt 8365753a43 let generate-cran-packages.R read checksums from cran-packages.nix 
this lets "Rscript generate-cran-packages.R > cran-packages.nix"
complete much quicker, because we only have to download packages
with new versions.
 2015-02-25 17:43:43 -05:00
Peter Simons 80101c8329 Disable some broken R packages. 2015-02-22 18:22:35 +01:00
Peter Simons 7afe039842 pkgs/development/r-modules: fix evaluation errors 2015-02-20 15:08:18 +01:00
Nikolay Amiantov 8450ff3ab8 rPackages: fix broken packages 2015-02-19 23:53:36 +03:00
Nikolay Amiantov 3e6531c174 rPackages: add packagesWithRDepends 2015-02-19 23:51:24 +03:00
Nikolay Amiantov 88ab59eb73 rPackages: nicer override* functions 2015-02-19 23:50:42 +03:00
Nikolay Amiantov 0f9c0348af rPackages: remove Xvfb where it's not needed 2015-02-19 23:49:41 +03:00
Nikolay Amiantov 6c2a607112 R: update archive url 2015-02-18 15:41:46 +03:00
Nikolay Amiantov 75ce44a95c r-modules: regenerate 2015-02-18 15:41:46 +03:00
Peter Simons 6b261cc4d4 rPackages: allow users to override the version of R to be used for building 2015-01-27 14:04:54 +01:00
Peter Simons 282fd58c85 r-curl: help the package find curl's headers 2015-01-26 10:23:34 +01:00
Peter Simons 7fa0fa6450 r-modules: fix evaluation and minor cleanups 2015-01-22 11:39:00 +01:00
Michel Kuhlmann 4a3be6c787 rPackages: overall update and cleaning default.nix 2015-01-21 11:15:38 +01:00
Peter Simons 1b50c50432 r-modules: enable packages that were broken by the missing gdal dependency 2015-01-14 11:24:28 +01:00
Peter Simons 9489dac1d3 r-modules: update list of broken packages 2015-01-13 12:44:11 +01:00
Peter Simons 844828afad r-caret: update hash 2015-01-13 12:44:11 +01:00
Peter Simons f09fec34e9 r-skmeans: update hash 2015-01-13 12:44:11 +01:00
Peter Simons d2d868534f r-OceanView: update hash 2015-01-13 12:44:11 +01:00
Peter Simons 1f49c1cef7 Mark R packages h2o, jvmr, and qtbase as broken. 
This also breaks dependent packages qtutils, qtpaint, and bamboo.
 2014-12-04 15:00:54 +01:00
Peter Simons 7ee70a1644 R-defaults: add obsolete package temporarily 2014-12-04 14:45:09 +01:00
Peter Simons 1897946daf r-selectspm: cannot be built because it depends on the broken package ecespa 2014-12-03 16:28:29 +01:00
Peter Simons d9f1968cab r-modules: always set meta.platforms when meta.hydraPlatforms is set, too 
By default, we take both values from the R derivation.
 2014-12-03 16:28:28 +01:00
Peter Simons 1c15a4122b r-modules: fix reference to cran-packages.nix 2014-12-03 16:28:28 +01:00
taku0 2d3dd68d27 cran-packages: combined packages definition files further 2014-12-03 16:28:28 +01:00
taku0 916e36940b cran-packages: combined packages definition files 2014-12-03 16:28:28 +01:00
taku0 4647743ed7 cran-packages: updated sources 2014-12-03 16:28:28 +01:00
taku0 2532844fb5 cran-packages: marks broken packages broken instead of removeing them 2014-12-03 16:28:28 +01:00
taku0 8f0d6091bb cran-packages: uses common variable names, doCheck and installFlags 2014-12-03 16:28:28 +01:00
taku0 dc1a3ed9b2 cran-packages: makes packages overridable 2014-12-03 16:28:28 +01:00
taku0 ea3c59907f cran-packages: sets hydraPlatforms of rpud and CARramps to none since those packages require non-free NVidia drivers 2014-12-03 16:28:28 +01:00
taku0 a28a6999b4 cran-packages: renamed the files from camelCase to kebab-case 2014-12-03 16:28:28 +01:00
taku0 2a1d9ddbf2 cran-packages: restructured 2014-12-03 16:28:28 +01:00
Peter Simons 7bc300570b r-RcmdrPlugin.ROC: disable broken build 2014-11-02 17:09:54 +01:00
Peter Simons c573e2d97b r-PoweR: fix build 2014-11-02 14:09:53 +01:00
Peter Simons 9707459112 r-nloptr: add missing dependency on nlopt library 2014-11-02 14:05:40 +01:00
Peter Simons fdee0ec8e7 r-RcppArmadillo: fix download URL 2014-11-02 14:05:40 +01:00