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2624 commits

Author SHA1 Message Date
Daniel Schaefer bac4d95aa2 treewide: Change URLs to HTTPS 
Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them
if there's actual content. Inspired by
https://github.com/NixOS/nixpkgs/issues/60004
 2019-04-22 10:19:54 +02:00
Timo Kaufmann 512097dece
Merge pull request #59921 from timokau/gap-update 
gap: 4.10.0 -> 4.10.1
 2019-04-20 13:17:04 +02:00
R. RyanTM 0dc3184871 picard-tools: 2.18.27 -> 2.19.0 (#59634) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
 2019-04-20 13:15:40 +02:00
Timo Kaufmann 9c7f774a39 gap: mark as broken on darwin 
Has been failing to build for a while.
 2019-04-20 12:36:11 +02:00
Timo Kaufmann af6739fdd7 gap: 4.10.0 -> 4.10.1 2019-04-20 09:54:27 +02:00
Aaron Andersen 77dbfa3a55
Merge pull request #53803 from jfrankenau/init-groove 
groove: init at 5.7.4
 2019-04-19 20:27:18 -04:00
Aaron Andersen 11cf1a282d
Merge pull request #58377 from bzizou/exonerate 
exonerate: init at 2.4.0
 2019-04-19 13:25:49 -04:00
Mario Rodas f84a7b3828
Merge pull request #59834 from luispedro/add_prodigal 
Prodigal: init at 2.6.3
 2019-04-19 09:50:03 -05:00
Bruno Bzeznik 6a8c9bff8f exonerate: init at 2.4.0 2019-04-19 14:58:57 +02:00
Johannes Frankenau e7f021ca93 groove: init at 5.7.4 2019-04-19 13:34:30 +02:00
Luis Pedro Coelho 3fc55eec05 Prodigal: init at 2.6.3 2019-04-19 08:38:14 +02:00
Timo Kaufmann 49b8efcb84 sage: 8.6 -> 8.7 
https://groups.google.com/forum/#!topic/sage-release/3m8PV9JkFro
 2019-04-17 22:44:32 +02:00
Timo Kaufmann e0e5445667 sage: fix another transient sig_on bug 
Caused a test failure on hydra, backporting upstream fix.
 2019-04-17 19:58:07 +02:00
R. RyanTM d11731130d star: 2.7.0c -> 2.7.0f 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
 2019-04-16 18:30:49 +02:00
Michael Raskin 3d3a415f24 petrinizer: init at 0.9.1.1 2019-04-16 15:11:03 +02:00
Austin Seipp bb27856a5c
Merge pull request #59522 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.99 -> 3.3.100
 2019-04-16 02:12:25 -05:00
Matthew Bauer f475aeaf29
Merge pull request #59535 from matthewbauer/homepage-fixes 
treewide: update homepages to https where available
 2019-04-15 20:47:30 -04:00
Matthew Bauer 290a5d916e treewide: update homepages to https where available 
Based on "problems" from repology:

https://repology.org/repository/nix_unstable/problems

Mostly simple changes to reflect redirects.
 2019-04-15 10:10:05 -04:00
R. RyanTM c906798997 jmol: 14.29.32 -> 14.29.36 (#59546) 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
 2019-04-15 12:02:41 +02:00
Austin Seipp a5add1e623
symbiyosys: 2018.12.09 -> 2019.03.28 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2019-04-15 00:17:54 -05:00
Luis Pedro Coelho 13a1f2c296 eggnog-mapper: init at 1.0.3 (#58905) 2019-04-14 17:22:47 -07:00
R. RyanTM 8a4ad20ed0 gtkwave: 3.3.99 -> 3.3.100 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
 2019-04-14 14:47:32 -07:00
Timo Kaufmann 62c288ec20
python.pkgs.sympy: 1.3 -> 1.4 (#59482) 2019-04-14 17:52:03 +02:00
Michael Raskin 796050fedd openmvs: mark as broken 2019-04-14 17:45:21 +02:00
markuskowa 87f595a1f0
Merge pull request #56615 from r-ryantm/auto-update/clp 
clp: 1.16.11 -> 1.17.0
 2019-04-14 12:05:32 +02:00
Markus Kowalewski 19dfffff3c
clp: restrict to x86_64-linux + darwin 2019-04-14 00:17:25 +02:00
Markus Kowalewski e879991e1b
clp: 1.17.0 -> 1.17.11 2019-04-14 00:04:06 +02:00
Julien Dehos a13f5d0da1 mxnet: fix cuda support enabled build (#48781) 2019-04-12 10:31:22 +00:00
Frederik Rietdijk 993e2b4ec2
Merge pull request #59098 from NixOS/staging-next 
Staging next
 2019-04-11 18:23:14 +02:00
Frederik Rietdijk 230c67f43b Merge master into staging-next 2019-04-11 07:50:23 +02:00
Dmitry Kalinkin c321b64b3f
snakemake: 5.2.2 -> 5.4.4 2019-04-10 14:18:26 -04:00
xeji cc118b4426
Merge pull request #58676 from smaret/gildas-update 
gildas: update to 20190401_a
 2019-04-10 14:30:50 +02:00
Frederik Rietdijk d108b49168 Merge master into staging-next 2019-04-09 16:38:35 +02:00
Vladimír Čunát f7ddff5c6d
R: fix regression from commit cbade453 #58989 
Normally the directory is created in fixup phase.
 2019-04-07 17:38:45 +02:00
Frederik Rietdijk 7f7da0a16f Merge master into staging-next 2019-04-07 15:14:52 +02:00
rhokue cbade453ac R: explicitly declare which as a run-time dependency 
Fixes https://github.com/NixOS/nixpkgs/issues/58963.
Closes https://github.com/NixOS/nixpkgs/pull/58989.
 2019-04-07 11:12:43 +02:00
Frederik Rietdijk 4a125f6b20 Merge master into staging-next 2019-04-07 08:33:41 +02:00
Timo Kaufmann ceede33ddf
python.pkgs.cypari2: 2.0.3 -> 2.1.0 (#59085) 2019-04-06 21:46:13 +00:00
Pascal Wittmann cfb6ade58c
Merge pull request #58931 from bzizou/migrate 
migrate: init at 3.7.2
 2019-04-06 14:23:50 +02:00
Vincent Laporte 50a03f8632 hol_light: 2018-09-30 -> 2019-03-27 2019-04-06 11:03:29 +02:00
Timo Kaufmann 6662fbc822
Merge pull request #58961 from timokau/nauty-features 
nauty: disable cpu feature detection
 2019-04-05 13:12:05 +00:00
Jan Tojnar cb1a20499a
Merge branch 'master' into staging 2019-04-05 11:37:15 +02:00
Bruno Bzeznik 0b03f44c2f migrate: init at 3.7.2 2019-04-05 09:01:36 +02:00
Timo Kaufmann 7f22a42976 nauty: disable cpu feature detection 2019-04-04 14:54:55 +02:00
Timo Kaufmann 15045e6233 nauty: add timokau as a maintainer 
I'm interested in this package as a sage dependency.
 2019-04-04 14:54:31 +02:00
Timo Kaufmann 5880c449dd nauty: small refactoring 2019-04-04 14:54:05 +02:00
R. RyanTM 9f68f2a7dc verilator: 4.010 -> 4.012 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
 2019-04-03 13:43:11 -05:00
markuskowa e2ce5fd7fe
Merge pull request #58860 from r-ryantm/auto-update/quantum-espresso 
quantum-espresso: 6.3 -> 6.4
 2019-04-03 15:42:40 +02:00
Markus Kowalewski c109aaa5cb
quantum-espresso: remove outdated makefile fix 2019-04-03 15:00:17 +02:00
markuskowa 126e1f8fd0
Merge pull request #58538 from bzizou/stacks 
stacks: init at 2.3e
 2019-04-03 14:41:00 +02:00