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61 commits

Author SHA1 Message Date
Peter Simons ec662c5654 R: 3.6.0 -> 3.6.1 2019-07-05 09:05:22 +00:00
Alex Branham 4264ad4c2b R: 3.5.3 -> 3.6.0 
The patch is necessary for the test suite to pass without errors. The
fix has already been made upstream but didn't make it into the 3.6.0
release.

Closes https://github.com/NixOS/nixpkgs/pull/60273.
 2019-04-29 13:35:21 +02:00
Timo Kaufmann 31709b611f R: add timokau as a maintainer 
I'm interested in R as a dependency for sage. R changes are likely to
impact sage, so I'd like to get notified on those changes.
 2019-04-28 13:20:47 +02:00
Vladimír Čunát f7ddff5c6d
R: fix regression from commit cbade453 #58989 
Normally the directory is created in fixup phase.
 2019-04-07 17:38:45 +02:00
rhokue cbade453ac R: explicitly declare which as a run-time dependency 
Fixes https://github.com/NixOS/nixpkgs/issues/58963.
Closes https://github.com/NixOS/nixpkgs/pull/58989.
 2019-04-07 11:12:43 +02:00
Alex Branham 1e354a7e40 R: 3.5.2 -> 3.5.3 
Closes https://github.com/NixOS/nixpkgs/pull/57400.
 2019-03-14 19:50:37 +01:00
Alex Branham a5fc513079 R: 3.5.1 -> 3.5.2 
Closes https://github.com/NixOS/nixpkgs/pull/52571.
 2018-12-21 13:59:36 +01:00
Matthew Bauer c0a804c747 treewide: add dontUseImakeConfigure where needed 
We need to set dontUseImakeConfigure in a few places to prevent imake
from overriding the default configure phase. This packages all have a
configure script that needs to get run:

- Xaw3d
- R
- tkgate
- ssvnc
 2018-11-28 20:14:45 -06:00
Tom Hall b51018ed2e R: Remove jdk dependency on aarch32/64 
Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
 2018-11-10 20:53:26 +00:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
Peter Simons cbc1a03ab8 R: update to version 3.5.1 
(cherry picked from commit 7e2f2037ea6d6533492d407696f260e7b11df49d)
 2018-07-02 11:33:50 +02:00
Silvan Mosberger 57bccb3cb8 treewide: http -> https sources (#42676) 
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
 2018-06-28 20:43:35 +02:00
Peter Simons 6799fcb42b R: 3.4.4 -> 3.5.0 
Unfortunately, the new version fails its test suite AGAIN when the recommended
packages are not build. Makes one wonder whether maybe we should offer the R
developers CI builds that check this. I've reported the issue upstream, let's
see what happens.
 2018-04-24 09:19:13 +02:00
Peter Simons d46a4b9829 R: 3.4.3 -> 3.4.4 2018-03-15 18:32:14 +01:00
Mitsuhiro Nakamura f4a031c63f R: add libcxx to default LDFLAGS and CPPFLAGS on Darwin 2018-02-06 18:57:12 +09:00
Daiderd Jordan 5569851745
R: fix dylib install_name on darwin 2018-01-24 00:23:16 +01:00
John Ericson 046f091e0d treewide: Don't use envHook anymore 
This commits needs a MAJOR audit as I oftentimes just guessed which of
`$hostOffset`, `$targetOffset`, or a fixed offset should be used.
 2017-12-30 22:04:22 -05:00
Peter Simons b0f82f0f2d R: update to 3.4.3 2017-11-30 18:45:48 +01:00
Peter Simons 4239d3bcba R: update to version 3.4.2 2017-09-29 15:21:09 +02:00
Silvan Mosberger f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809) 
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
 2017-08-01 22:03:30 +02:00
Peter Simons 4c5577b504 R: update to version 3.4.1 2017-06-30 13:37:26 +02:00
Peter Simons 5e5d16f425 R: import upstream patch to fix broken "R CMD Sweave" command 
The command "R CMD Sweave" always exits with error code "1", even if the
command was successful. This upstream patch remedies this issue.
 2017-05-03 14:20:41 +02:00
Peter Simons d16c38a260 R: update to version 3.4.0 
The new version needs TZ configured to a value other than "UTC" for the test
suite to succeed. Otherwise, an assumption in "reg-tests-1d.R" won't hold that
expects

  d <- as.POSIXlt("2016-12-06"); d$zone <- 1; format(d)

to throw an error about an invalid time zone.
 2017-04-24 15:39:08 +02:00
Peter Simons c5563b48ba R: set TZDIR properly to fix test suite 2017-03-07 14:56:46 +01:00
Peter Simons 6b3eec627e R: include output of sessionInfo() in the "make check" log 
The R developers would like that information to be included in bug
reports.
 2017-03-07 14:56:46 +01:00
Peter Simons fac139e723 R: update to version 3.3.3 2017-03-07 14:56:46 +01:00
Justin Bedo 4bb8727284
R: 3.2.4 -> 3.3.2 2017-02-24 15:22:12 +11:00
Michael Raskin 93bea1ecb0 R: 3.2.3 -> 3.2.4 2016-10-26 11:06:37 +02:00
Peter Simons 8e462995ba Bring my stdenv.lib.maintainers user name in line with my github nick. 2016-05-16 22:49:55 +02:00
Vladimír Čunát 716aac2519 Merge branch 'staging' into closure-size 2016-01-19 09:55:31 +01:00
Mathieu Boespflug 545444cd19 R: add a new enableStrictBarrier package option. 
This option compiles R with --enable-strict-barrier. Doing so is
enables extra memory diagnostics in R that very useful for debugging
memory leak or memory protections issues in extensions to R written in
C, or for any apps embedding R (e.g. Haskell aps embedding R via
HaskellR).
 2016-01-17 11:09:05 +01:00
Vladimír Čunát 4858f3307e R: fix build after splitting gfortran.lib 
The extra flag was causing static libraries to be found (and used)
before dynamic ones. /cc #12085
 2016-01-12 23:57:48 +01:00
Asko Soukka a225a650bf R: fix Darwin build 
Merged manually from https://github.com/NixOS/nixpkgs/pull/10623.
 2016-01-06 22:20:40 +01:00
Michel Kuhlmann cebbb18e9e R: 3.2.2 -> 3.2.3 2015-12-11 11:36:30 +01:00
Nikolay Amiantov 5ee5b5ba82 R: add curl for https support 2015-11-25 11:39:28 +01:00
Karn Kallio 87b75c33ce R: advance to version 3.2.2. 
A test failing without recommended packages has been patched.
 2015-10-02 22:15:14 +02:00
Michel Kuhlmann 46d46fd05a R: update to 3.2.1 2015-06-18 14:00:29 +02:00
Thomas Tuegel e729a88474 R: build with openblas 
Fixes #6393.
 2015-06-04 17:42:04 -05:00
Peter Simons f82a287c20 R: update to 3.2.0 2015-04-17 20:02:46 +02:00
Peter Simons 3f7de179f5 R: update to version 3.1.3 2015-03-09 16:37:05 +01:00
Eric Seidel f272730399 rename <gcc-frontend>.gcc to <gcc-frontend>.cc 2015-01-14 20:59:10 -08:00
Peter Simons 67ddc8f4b9 R: add meta.platforms attribute 2014-12-03 16:28:28 +01:00
Peter Simons a9c53037fa Merge remote-tracking branch 'origin/master' into staging. 2014-11-02 16:15:53 +01:00
Peter Simons ead6bc4a57 R: run the test suite only when recommended packages are built 2014-11-01 21:08:05 +01:00
Peter Simons 12e26d47b7 R: update to version R-3.1.2 2014-11-01 13:43:48 +01:00
Eelco Dolstra 91ec6e0d90 Merge remote-tracking branch 'origin/master' into staging 2014-09-18 22:28:35 +02:00
Vladimír Čunát d957b4bd78 Merge recent master into staging 
Hydra nixpkgs: ?compare=1151601
 2014-09-13 21:48:29 +02:00
Peter Simons b9f7f19820 R: Revert update to version 3.1.1 
This reverts commit 6e803a684f. The new version
fails its test suite [1]. The issue has been reported upstream [2].

[1] http://hydra.cryp.to/build/191457/nixlog/1/raw
[2] https://bugs.r-project.org/bugzilla/show_bug.cgi?id=15975
 2014-09-13 20:03:44 +02:00
Peter Simons 6e803a684f R: update to version 3.1.1 2014-09-12 15:20:06 +02:00
Eelco Dolstra e3f7dbbac8 Cleanup: Use += to append to envHooks 2014-08-09 12:47:05 +02:00