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137 commits

Author SHA1 Message Date
Jörg Thalheim 1b146a8c6f
treewide: remove paxutils from stdenv
More then one year ago we removed grsecurity kernels from nixpkgs:
https://github.com/NixOS/nixpkgs/pull/25277

This removes now also paxutils from stdenv.
2018-12-22 12:55:05 +01:00
Jörg Thalheim 14b2dcea8f python37: fix cross-compilation 2018-12-18 12:39:24 +00:00
Frederik Rietdijk 63c6875f26 Merge master into staging-next 2018-11-18 10:32:12 +01:00
Travis Athougies d0eb502327 Enable cross compilation for cpython 2.7 (#50245) 2018-11-15 19:36:03 +01:00
Franz Pletz ae3e9b5a27 python27: add patch to fix CVE-2018-1000802 2018-11-11 09:00:31 +01:00
Frederik Rietdijk 53d00c3351 Merge master into staging-next 2018-11-10 11:08:54 +01:00
Frederik Rietdijk b1bdce0793 python34: remove
Python 3.4 will receive it's final patch release in March 2019 and there won't
be any releases anymore after that, so also not during NixOS 2019.03.

Python 3.4 is not used anymore in Nixpkgs. In any case, migrating code from
3.4 to 3.4+ is trivial.
2018-11-04 18:48:24 +01:00
Frederik Rietdijk e4d84434a7 python37: 3.7.0 -> 3.7.1 2018-10-20 20:58:51 +02:00
Frederik Rietdijk 241bab3a5e python36: 3.6.6 -> 3.6.7 2018-10-20 20:58:40 +02:00
Daiderd Jordan 1383c08f2c
Merge branch 'master' into staging-next 2018-10-01 19:42:07 +02:00
John Ericson e2a2073011 Merge remote-tracking branch 'upstream/master' into staging 2018-09-26 11:23:18 -04:00
John Ericson 715e0a4e59 python-*: Format pythonPackages bindings 2018-09-25 15:27:09 -04:00
Dan Peebles 4efd4053ed stdenv/darwin: integrate a new CoreFoundation
This also updates the bootstrap tool builder to LLVM 5, but not the ones
we actually use for bootstrap. I'll make that change in a subsequent commit
so as to provide traceable provenance of the bootstrap tools.
2018-09-15 16:05:46 -04:00
John Ericson 0828e2d8c3 treewide: Remove usage of remaining redundant platform compatability stuff
Want to get this out of here for 18.09, so it can be deprecated
thereafter.
2018-08-30 17:20:32 -04:00
Frederik Rietdijk 3a61a94789 python35: 3.5.5 -> 3.5.6 2018-08-02 16:30:27 +02:00
Frederik Rietdijk 3bd5580b04 python34: 3.4.8 -> 3.4.9 2018-08-02 16:30:16 +02:00
Daiderd Jordan cacf0925a5
python-boot: add error message when accessing python.pkgs 2018-07-27 22:36:54 +02:00
Frederik Rietdijk 099c13da1b Merge staging-next into master (#44009)
* substitute(): --subst-var was silently coercing to "" if the variable does not exist.

* libffi: simplify using `checkInputs`

* pythonPackges.hypothesis, pythonPackages.pytest: simpify dependency cycle fix

* utillinux: 2.32 -> 2.32.1

https://lkml.org/lkml/2018/7/16/532

* busybox: 1.29.0 -> 1.29.1

* bind: 9.12.1-P2 -> 9.12.2

https://ftp.isc.org/isc/bind9/9.12.2/RELEASE-NOTES-bind-9.12.2.html

* curl: 7.60.0 -> 7.61.0

* gvfs: make tests run, but disable

* ilmbase: disable tests on i686. Spooky!

* mdds: fix tests

* git: disable checks as tests are run in installcheck

* ruby: disable tests

* libcommuni: disable checks as tests are run in installcheck

* librdf: make tests run, but disable

* neon, neon_0_29: make tests run, but disable

* pciutils: 3.6.0 -> 3.6.1

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/pciutils/versions.

* mesa: more include fixes

mostly from void-linux (thanks!)

* npth: 1.5 -> 1.6

minor bump

* boost167: Add lockfree next_prior patch

* stdenv: cleanup darwin bootstrapping

Also gets rid of the full python and some of it's dependencies in the
stdenv build closure.

* Revert "pciutils: use standardized equivalent for canonicalize_file_name"

This reverts commit f8db20fb3a.
Patching should no longer be needed with 3.6.1.

* binutils-wrapper: Try to avoid adding unnecessary -L flags

(cherry picked from commit f3758258b8895508475caf83e92bfb236a27ceb9)
Signed-off-by: Domen Kožar <domen@dev.si>

* libffi: don't check on darwin

libffi usages in stdenv broken darwin. We need to disable doCheck for that case.

* "rm $out/share/icons/hicolor/icon-theme.cache" -> hicolor-icon-theme setup-hook

* python.pkgs.pytest: setupHook to prevent creation of .pytest-cache folder, fixes #40273

When `py.test` was run with a folder as argument, it would not only
search for tests in that folder, but also create a .pytest-cache folder.
Not only is this state we don't want, but it was also causing
collisions.

* parity-ui: fix after merge

* python.pkgs.pytest-flake8: disable test, fix build

* Revert "meson: 0.46.1 -> 0.47.0"

With meson 0.47.0 (or 0.47.1, or git)
things are very wrong re:rpath handling
resulting in at best missing libs but
even corrupt binaries :(.

When we run patchelf it masks the problem
by removing obviously busted paths.
Which is probably why this wasn't noticed immediately.

Unfortunately the binary already
has a long series of paths scribbled
in a space intended for a much smaller string;
in my testing it was something like
lengths were 67 with 300+ written to it.

I think we've reported the relevant issues upstream,
but unfortunately it appears our patches
are what introduces the overwrite/corruption
(by no longer being correct in what they assume)

This doesn't look so bad to fix but it's
not something I can spend more time on
at the moment.

--

Interestingly the overwritten string data
(because it is scribbled past the bounds)
remains in the binary and is why we're suddenly
seeing unexpected references in various builds
-- notably this is is the reason we're
seeing the "extra-utils" breakage
that entirely crippled NixOS on master
(and probably on staging before?).

Fixes #43650.

This reverts commit 305ac4dade.

(cherry picked from commit 273d68eff8)
Signed-off-by: Domen Kožar <domen@dev.si>
2018-07-24 15:04:48 +01:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth 87f5930c3f [bot]: remove unreferenced code 2018-07-20 18:48:37 +00:00
Vladimír Čunát 0f01215203
Merge branch 'master' into staging-next
Hydra: ?compare=1468896
2018-07-14 18:15:30 +02:00
Daiderd Jordan 63aed85367
Merge pull request #42894 from LnL7/darwin-python37
python37: fix darwin build
2018-07-09 23:12:11 +02:00
Daiderd Jordan 0c4595a9b6
python37: fix darwin build 2018-07-09 22:34:55 +02:00
Orivej Desh fb36c7acff Add type_getattro.patch because it is no longer downloadable (#43130)
See f2f7c4287f
2018-07-06 23:39:39 +00:00
Dmitry Kalinkin ea08cf9e6c python37: apply distutils patch 2018-07-03 13:29:07 -04:00
Dmitry Kalinkin 29c3f32841 python36: fix on darwin
Fixes: 78e05215a7 ('python36: 3.6.5 -> 3.6.6')
2018-07-03 13:28:23 -04:00
Vladimír Čunát c1ffc65d1a
Merge branch 'master' into staging
This apparently fixes some broken src fetches (gnuradio, twisted).
2018-07-02 11:10:26 +02:00
Jörg Thalheim cb2862e214 python37: fix openssl detection
Before python37 was build without ssl support.
Tested with `python  -c 'import ssl'`
2018-07-01 21:00:26 +01:00
Vladimír Čunát f7781f5293
Merge branch 'master' into staging 2018-06-30 01:41:59 +02:00
Andy Dirnberger 780959ce8f
python36: fix version in identifier 2018-06-28 23:40:47 -04:00
Frederik Rietdijk 78e05215a7 python36: 3.6.5 -> 3.6.6 2018-06-28 08:25:50 +02:00
Frederik Rietdijk 7261a66d71 python37: 3.7.0rc1 -> 3.7.0 2018-06-28 08:23:49 +02:00
Frederik Rietdijk 7c9d95fef5 python37: init at 3.7.0rc1 2018-06-25 10:41:32 +02:00
Timo Kaufmann f2f7c4287f python: Fix upstream bugs #27177 and #25750
27177 was merged but not backported to 2.7.
There is currently an open PR for 25750.
2018-06-02 13:44:28 +02:00
Vladimír Čunát 59beaf7fa2 python: 2.7.14 -> 2.7.15 (bugfix + security)
Fixes CVE-2018-1000030, /cc #38993.

The ncurses patch no longer applied, and it appears the problems have
been resolved upstream https://bugs.python.org/issue25720
https://github.com/python/cpython/commit/6ba0b583d67
2018-05-09 16:40:35 +02:00
Matthew Justin Bauer 1d3fe7d894
Merge pull request #39576 from veprbl/pr/py3_distutils_fix
python3: add C++ compiler support for distutils
2018-05-09 06:11:44 +00:00
Dmitry Kalinkin b8917dc0f3
python35, python36: fix reading large files on darwin 2018-04-27 17:47:50 -04:00
Dmitry Kalinkin 31010e0f89
python3: add C++ compiler support for distutils
This implements 095095c4 ('python: add C++ compiler support for distutils')
for python3. Should fix various problems with python packages on darwin.
2018-04-26 18:27:42 -04:00
Will Dietz b11f3bc8e3 cpython: don't use lchmod() on Linux, fix w/musl
upstream issue:
https://bugs.python.org/issue31940

There are two PR's proposed to fix this,
but both seem to be stalling waiting for review.

I previously used what appears to be the favored
of the two approaches[1] to fix this,
with plan of keeping it musl-only until PR was merged.

However, while writing up a commit message
explaining the problem and why it needed fixing...

I investigated a bit and found it increasingly
hard to justify anything other than ...
simply not using lchmod.

Here's what I found:
* lchmod is non-POSIX, seems BSD-only these days
* Functionality of lchmod isn't supported on Linux
  * best scenario on Linux would be an error
* POSIX does provide lchmod-esque functionality
  with fchmodat(), which AFAICT is generally preferred.
* Python intentionally overlooks fchmodat()[2]
  electing instead to use lchmod() behavior
  as a proxy for whether fchmodat() "works".
  I'm not sure I follow their reasoning...
* both glibc and musl provide lchmod impls:
  * glibc returns ENOSYS "not implemented"
  * musl implements lchmod with fchmodat(),
    and so returns EOPNOTSUPP "op not supported"
* Python doesn't expect EOPNOTSUPP from lchmod,
  since it's not valid on BSD's lchmod.
* "configure" doesn't actually check lchmod usefully,
  instead checks for glibc preprocessor defines
  to indicate if the function is just a stub[3];
  somewhat fittingly, if the magic macros are defined
  then the next line of the C source is "choke me",
  causing the compiler to trip, fall, and point
  a finger at whatever is near where it ends up.
  (somewhat amusing, but AFAIK effective way to get an error :P)

I'm leaving out links to threads on mailing lists and such,
but for now I hope I've convinced you
(or to those reading commit history: explained my reasons)
that this is a bit of a mess[4].

And so instead of making a big mess messier,
and with hopes of never thinking about this again,
I propose we simply tell Python "don't use lchmod" on Linux.

[1] https://github.com/python/cpython/pull/4783
[2] 28453feaa8/Lib/os.py (L144)
[3] 28453feaa8/configure (L2198)
[4] Messes happen, no good intention goes unpunished :).
2018-04-25 21:46:13 -05:00
Jan Malakhovski 7438083a4d tree-wide: disable doCheck and doInstallCheck where it fails (the trivial part) 2018-04-25 04:18:46 +00:00
Frederik Rietdijk 402a074cfe python3: 3.6.4 -> 3.6.5 2018-03-30 08:17:24 +02:00
Will Dietz 9aa22191cf python*: set thread stack size on musl
Ensure recursion limit is reached before stack overflow.

Python does this for OSX and BSD:
13ff24582c/Python/thread_pthread.h (L22)

Size of 1MB chosen to match value in Alpine:
https://git.alpinelinux.org/cgit/aports/commit/main/python2/APKBUILD?id=2f35283fec8ec451fe5fb477dd32ffdcc0776e89

Manual testing via Alpine's test-stacksize.py crashes on these
previously, and works with these changes.
2018-03-20 08:14:04 -05:00
Josef Kemetmüller af0f9fa26b pythonPackages.tkinter: fix darwin build 2018-03-18 22:28:46 +01:00
Will Dietz 4f8292fb35 python2.7: drop unused cross-compile patch 2018-02-13 09:45:03 -06:00
Ben Gamari cb5453e13a cpython: Enable cross-compilation 2018-02-13 09:44:28 -06:00
Frederik Rietdijk 870e736177 python35: 3.5.4 -> 3.5.5 2018-02-05 11:53:38 +01:00
Frederik Rietdijk 8243d2b96f python34: 3.4.7 -> 3.4.8 2018-02-05 11:53:38 +01:00
Frederik Rietdijk f72a465e84 CPython and PyPy: update meta.maintainers 2018-01-20 12:25:56 +01:00
Frederik Rietdijk c9044dee32 python36: 3.6.3 -> 3.6.4 2017-12-20 10:27:10 +01:00
Shea Levy 3dfbf51a25
Add gurobipy for python2.7 on darwin. 2017-12-09 15:00:43 -05:00