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Author SHA1 Message Date
Timo Kaufmann 024c23503c singular: 4.1.1p1 -> 4.1.1p2 2018-07-23 12:17:25 +02:00
Lluís Batlle i Rossell 66d7126255 Take me (viric) out of most maintenance
Since years I'm not maintaining anything of the list below other
than some updates when I needed them for some reason. Other people
is doing that maintenance on my behalf so I better take me out but
for very few packages. Finally!
2018-07-22 21:50:19 +02:00
Frederik Rietdijk f3088832df
Merge pull request #43899 from r-ryantm/auto-update/tla-toolbox
tlaplusToolbox: 1.5.6 -> 1.5.7
2018-07-22 08:44:58 +02:00
Frederik Rietdijk 5dcb1febac
Merge pull request #43913 from r-ryantm/auto-update/picard-tools
picard-tools: 2.18.9 -> 2.18.10
2018-07-22 08:42:32 +02:00
Frederik Rietdijk 935a54f300
Merge pull request #43940 from r-ryantm/auto-update/gtkwave
gtkwave: 3.3.91 -> 3.3.92
2018-07-22 08:23:25 +02:00
R. RyanTM a7a3526f71 gtkwave: 3.3.91 -> 3.3.92
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gtkwave/versions.
2018-07-21 17:57:51 -07:00
Ricardo M. Correia 0cf09556eb
why3: 0.88.3 -> 1.0.0 2018-07-21 22:53:44 +00:00
R. RyanTM 668047ca55 picard-tools: 2.18.9 -> 2.18.10
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions.
2018-07-21 12:28:41 -07:00
R. RyanTM 9882d5635c tlaplusToolbox: 1.5.6 -> 1.5.7
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/tla-toolbox/versions.
2018-07-21 08:39:53 -07:00
Jörg Thalheim 218298b30f
Merge branch 'master' into unused5 2018-07-21 15:41:22 +01:00
Sebastien Maret 9092083e9e gildas: fix architecture detection for aarch64 2018-07-21 13:21:06 +02:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth 6d2857a311 [bot] treewide: remove unused 'inherit' in let blocks 2018-07-20 19:38:19 +00:00
Frederik Rietdijk 1a6af9f88e
Merge pull request #43857 from volth/unused
[bot] treewide: remove unreferenced code
2018-07-20 21:06:32 +02:00
volth 87f5930c3f [bot]: remove unreferenced code 2018-07-20 18:48:37 +00:00
Matthew Bauer fddd90e9ea
Merge pull request #43538 from timokau/fetchpatch-fix
fetchpatch: quote excludes
2018-07-19 00:35:09 -04:00
Matthew Bauer 76999cc40e treewide: remove aliases in nixpkgs
This makes the command ‘nix-env -qa -f. --arg config '{skipAliases =
true;}'’ work in Nixpkgs.

Misc...

- qtikz: use libsForQt5.callPackage

  This ensures we get the right poppler.

- rewrites:

  docbook5_xsl -> docbook_xsl_ns
  docbook_xml_xslt -> docbook_xsl

diffpdf: fixup
2018-07-18 23:25:20 -04:00
Michael Raskin 877899fdb9
Merge pull request #43679 from timokau/ntl-11.2.1
ntl: 9.11.0 -> 11.2.1
2018-07-18 15:08:43 +00:00
Jan Tojnar a4443ef859
nasc: 0.4.6 → 0.4.7 2018-07-18 15:38:52 +02:00
Timo Kaufmann cad446513e ntl: 9.11.0 -> 11.2.1
ntl hasn't been updated in a while. So I'm doing that and adding myself
as the maintainer. I'm also adding some options and pinning the sage
dependency, since it is unfortunately not compatible with the latest ntl
yet.

I've also enabled the tests, since they don't take terribly long and are
worth the time in my opinion.
2018-07-18 14:58:38 +02:00
Timo Kaufmann 3058513941 fetchpatch: add option to revert a patch 2018-07-16 22:46:54 +02:00
Jan Malakhovski e80ca2182c clp: cleanup expression 2018-07-16 16:33:14 +00:00
Gabriel Ebner 862e4e4fdb cvc4: fix homepage url 2018-07-16 15:58:22 +01:00
fragamus 794a60a2fb bliss: fix header location (#43170) 2018-07-16 04:12:07 +00:00
Shea Levy ed23255c5a
Merge branch 'init-gurobi' of git://github.com/jfrankenau/nixpkgs 2018-07-15 18:25:07 -04:00
Timo Kaufmann c77d1e5b31 eclib: 20171219 -> 20180710
Also includes the necessary sage compatibility patch, borrowed from
ArchLinux.
2018-07-15 14:59:28 +02:00
Johannes Frankenau d6874a7e1e gurobi: init at 8.0.1 2018-07-14 23:52:48 +02:00
Mario Rodas 1c88d0c6bd z3: fix darwin build (#43526) 2018-07-14 21:49:47 +02:00
markuskowa 7f1bcb1ebf octopus: 7.2 -> 8.1 (libxc 3.0.1 -> 4.2.3) (#43484) 2018-07-14 00:37:30 +02:00
Timo Kaufmann 85f7fa93bc pythonPackages.cypari2: 1.1.4 -> 1.2.1 (#43496) 2018-07-14 00:17:55 +02:00
Frederik Rietdijk d0446a5c76
Merge pull request #43436 from timokau/sage-new-flask
sage: replace flask-babel version pin by patch
2018-07-13 18:52:26 +02:00
Frederik Rietdijk 59163c9c1c
Merge pull request #43471 from r-ryantm/auto-update/igv
igv: 2.4.11 -> 2.4.13
2018-07-13 18:47:57 +02:00
Michael Raskin 9932071581
Merge pull request #43472 from r-ryantm/auto-update/golly
golly: 3.1 -> 3.2
2018-07-13 15:51:31 +00:00
Will Dietz efdf4711d8
Merge pull request #43445 from dtzWill/fix/yices-symlink
yices: fix symlink created to match version
2018-07-13 10:11:49 -05:00
R. RyanTM d25ec8df03 golly: 3.1 -> 3.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/golly/versions.
2018-07-13 03:02:59 -07:00
R. RyanTM ab535c2757 igv: 2.4.11 -> 2.4.13
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/igv/versions.
2018-07-13 02:49:22 -07:00
Will Dietz f731c99e7d abc-verifier: 20160818 -> 2018-07-08
Now hosted on github.
2018-07-12 21:44:56 -05:00
Will Dietz 946a65ca5c yices: use lib.splitString, not everyone has builtins.splitVersion 2018-07-12 19:11:06 -05:00
Will Dietz 237c8f4148 yices: simplify ln command 2018-07-12 18:52:10 -05:00
Will Dietz 6ff8685057 yices: fix symlink to match version of package
To help avoid this happening again, derive the string to use
from the version directly instead of embedding it in installPhase.
2018-07-12 18:46:28 -05:00
Will Dietz d3a595f190 libpoly: 0.1.5 -> 0.1.7 (noop), cleanup a bit to modern style 2018-07-12 17:06:57 -05:00
Timo Kaufmann 35896e3506 sage: replace flask-babel version pin by patch 2018-07-12 22:55:16 +02:00
Austin Seipp 54e9f7dcbe z3: move to multiple output packages
The Z3 source code is effectively compiled into two completely separate
objects: the z3 binary file, and the libz3.so library -- but the binary is not
linked against the shared library, it simply incorporates all of the object
files. The Z3 code base results in an ~25MB object on x86_64-linux. As a
result, splitting bin/ and lib/ results in a 50% reduction in closure size.

(The include/ directory is also surprisingly large at .5MB...)

This also splits the python API into a completely separate .python attribute,
as well.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-07-12 15:48:48 -05:00
Timo Kaufmann d37c23c699 jmol: 14.29.12 -> 14.29.17 (#43429) 2018-07-12 22:31:52 +02:00
Frederik Rietdijk 04cae0e5fb
Merge pull request #43333 from r-ryantm/auto-update/libpoly
libpoly: 0.1.4 -> 0.1.5
2018-07-11 19:01:02 +02:00
R. RyanTM 40e648b7ab yices: 2.5.4 -> 2.6.0
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/yices/versions.
2018-07-11 08:45:45 -05:00
R. RyanTM a89b538f0b libpoly: 0.1.4 -> 0.1.5
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/libpoly/versions.
2018-07-11 02:29:13 -07:00
R. RyanTM ade3e571a1 qalculate-gtk: 2.6.0 -> 2.6.1
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/qalculate-gtk/versions.
2018-07-11 00:45:08 -07:00
R. RyanTM 99cb9de551 fricas: 1.3.3 -> 1.3.4 (#43023)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/fricas/versions.

These checks were done:

- built on NixOS
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/fricas passed the binary check.
- /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4/bin/efricas passed the binary check.
- 2 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 1.3.4 with grep in /nix/store/zbmbsjm8mg6i7s6fm3zas1bndg24w91x-fricas-1.3.4
- directory tree listing: https://gist.github.com/75d751d9733f6b0a7b582ab838a71963
- du listing: https://gist.github.com/4c6fe5f342430a2b36568da3229d3dc4
2018-07-09 16:02:58 +02:00
R. RyanTM 6ec4be7ec5 igv: 2.4.10 -> 2.4.11 (#43003)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/igv/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11/bin/igv had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.4.11 with grep in /nix/store/yc18a4s9rs8m6wjbsmi1lax5v0kkyl2i-igv-2.4.11
- directory tree listing: https://gist.github.com/ca4cf484aab1c1590806c47c4fdde1d7
- du listing: https://gist.github.com/f7ff80a2429cf0a942195db4944659b1
2018-07-09 16:02:34 +02:00
Silvan Mosberger 8e2c3b93ba
Merge pull request #43096 from jbedo/mosdepth
mosdepth: init 0.2.3
2018-07-09 04:55:24 +02:00
Dan Peebles 1dd7bc7dfc monosat: update build to use handy new environment variable 2018-07-08 22:04:05 -04:00
Dan Peebles 0372c87481 monosat: cbaf79cf -> 2deeadef
Upstream fixed a few things I needed to work around
2018-07-08 21:57:00 -04:00
Justin Bedo 59141de608
mosdepth: init 0.2.3 2018-07-09 08:51:49 +10:00
Dan Peebles 631dd7a4e9 monosat: init at 1nx3wh34
Also includes the python and java bindings (although java is only
currently enabled on Linux)
2018-07-08 12:43:29 -04:00
R. RyanTM cb85999b6b picard-tools: 2.18.7 -> 2.18.9 (#42967)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/ah3v1x61gmj9lan8a3qvy3824lqvjdgi-picard-tools-2.18.9/bin/picard had a zero exit code or showed the expected version
- 0 of 1 passed binary check by having a zero exit code.
- 0 of 1 passed binary check by having the new version present in output.
- found 2.18.9 with grep in /nix/store/ah3v1x61gmj9lan8a3qvy3824lqvjdgi-picard-tools-2.18.9
- directory tree listing: https://gist.github.com/0972acdc51fe8a1cde470e4ab5e87993
- du listing: https://gist.github.com/6a66b6723ce4887cd108678369b87360
2018-07-06 20:24:57 +02:00
Sebastien Maret 8ae9e7ef10 gildas: apply upstream fix and restore parallel building 2018-07-06 14:02:37 +02:00
Sebastien Maret 72dc6fdf47 gildas: disable parallel building 2018-07-06 10:35:53 +02:00
John Wiegley 56afc551f2
verilator: Allow building on Darwin as well as Linux 2018-07-05 15:17:17 -07:00
Matthew Bauer bb0febf575
Merge pull request #43079 from matthewbauer/rework-extra-pkgs
Rework stage.nix's extraPkgs
2018-07-05 18:05:57 -04:00
Matthew Bauer c491a99362 treewide: remove callPackage_i686
This has been replaced with pkgsi686Linux.callPackage
2018-07-05 14:04:52 -04:00
Will Dietz 67986382e4
Merge pull request #43071 from dtzWill/fix/vampire-portability
vampire: portability fixes
2018-07-05 11:13:42 -05:00
Gabriel Ebner bec83a2b9e cvc4: 1.5 -> 1.6 2018-07-05 17:57:06 +02:00
Will Dietz 7353d8396d vampire: enable parallel building 2018-07-05 10:13:40 -05:00
Will Dietz 600abbedc9 vampire: portability fixes
These have been submitted upstream,
but seconds before writing this message
so naturally no upstream response "yet" :).

Regardless of response, fetch patches
from the corresponding PR's for context
and of course hopefully they'll
be included in next version.
2018-07-05 10:13:32 -05:00
Will Dietz 8e6db30bb7 vampire: use CC/CXX from env, instead of always g++ 2018-07-05 10:11:32 -05:00
Gabriel Ebner 887b6fd793 qalculate-gtk: 2.5.0 -> 2.6.0 2018-07-05 12:33:27 +02:00
Gabriel Ebner 7c63a9cac2 eprover: 2.0 -> 2.1 2018-07-05 12:26:43 +02:00
Gabriel Ebner 57ae4e8d8e vampire: init at 4.2.2 2018-07-05 09:34:28 +02:00
R. RyanTM 5a859d9b10 stellarium: 0.18.0 -> 0.18.1 (#42949)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/stellarium/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/2c607ylvxs69nbr99ly1bgcb0bbk47xf-stellarium-0.18.1/bin/stellarium had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/2c607ylvxs69nbr99ly1bgcb0bbk47xf-stellarium-0.18.1/bin/.stellarium-wrapped had a zero exit code or showed the expected version
- 0 of 2 passed binary check by having a zero exit code.
- 0 of 2 passed binary check by having the new version present in output.
- found 0.18.1 with grep in /nix/store/2c607ylvxs69nbr99ly1bgcb0bbk47xf-stellarium-0.18.1
- directory tree listing: https://gist.github.com/dd98359fb1214ae24bd70e291c1bc33d
- du listing: https://gist.github.com/67baedda5ffc1ad0aa064239cb503c2b
2018-07-05 00:24:22 +02:00
Michael Raskin 04bd737062
Merge pull request #43026 from r-ryantm/auto-update/clingo
clingo: 5.2.2 -> 5.3.0
2018-07-04 21:01:39 +00:00
R. RyanTM a431e4f207 clingo: 5.2.2 -> 5.3.0
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/clingo/versions.

Version release notes (from GitHub):
# Packages

- The easiest way to obtain Python enabled clingo packages is using [Anaconda][ana]. Packages are available in the [Potassco channel][pch]. First [install either Anaconda or Miniconda][ins] and then run: `conda install -c potassco clingo`.
- Packages for clingo are available in the Linux distributions [Debian][deb], [Ubuntu][ubu], and [Arch Linux (AUR)][aur].
- For Mac OS X, clingo packages are available in [homebrew][hbr] and [macports][mac].

# Changes

* change C API to use numeric instead of symbolic literals
  * affects assumptions and assigning/releasing externals (breaks backward compatibility)
  * added overloads to C++, python and lua API to support both numeric and symbolic version (preserves backward compatibility for most code)
* the python, C and C++ APIs now allow for customizing clingo by implementing a custom main function but reusing the rest of the application including the standard output
* add API function to detect conflicting programs
* add message logger to python and lua interface
* add support for primes in the beginning of identifiers and variable names
* add per solver registration of watches during propagator initialization
* add a directive to selectivel suppress undefined atom warnings
* add support for user defined statistics
* add _to_c functions for python API to be able to call C functions from python
* only create ground representations for requested program parts when grounding (#71)
* improve program observer (#19)
* support for binary, octal, and hexadecimal numbers (#65)
* the backend has to be opened/closed now
* release python's GIL while grounding (#82)
* TruthValue.{True,False} becomes TruthValue.{\_True,\_False} in python API
* improve API and it's documentation

[deb]: https://www.debian.org/
[ubu]: https://www.ubuntu.com/
[aur]: https://aur.archlinux.org/
[hbr]: https://brew.sh/
[mac]: https://www.macports.org/
[ana]: https://conda.io
[pch]: https://anaconda.org/potassco/clingo
[ins]: https://conda.io/docs/user-guide/install/index.html

These checks were done:

- built on NixOS
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/lpconvert passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/clasp passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/reify passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/gringo passed the binary check.
- /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0/bin/clingo passed the binary check.
- 5 of 5 passed binary check by having a zero exit code.
- 0 of 5 passed binary check by having the new version present in output.
- found 5.3.0 with grep in /nix/store/484fg7w1fr5xh2avc4g7811mxq3v3p9x-clingo-5.3.0
- directory tree listing: https://gist.github.com/bba2eaf1d132fbdd88a2710a6030c419
- du listing: https://gist.github.com/230340bfa02557290a60cfc6d2e7e977
2018-07-04 11:23:33 -07:00
Silvan Mosberger fac943fc81
Merge pull request #42897 from fragamus/master
add bliss package
2018-07-04 13:59:41 +02:00
Michael Gough e3ea685957 bliss: init at 0.73 2018-07-04 11:33:10 +00:00
Timo Kaufmann dcc1013f6b pythonPackages.backports_shutil_get_terminal_size: 1.0 -> 2016-02-21 (#42840) 2018-07-02 18:03:05 +02:00
Sebastien Maret d46fde9eb1 gildas: 20180601_a -> 20180701_a 2018-07-02 17:16:25 +02:00
Sarah Brofeldt f06ce58323
Merge pull request #42843 from fragamus/master
hmetis: init at 1.5
2018-07-02 11:40:41 +02:00
Peter Simons cbc1a03ab8 R: update to version 3.5.1
(cherry picked from commit 7e2f2037ea6d6533492d407696f260e7b11df49d)
2018-07-02 11:33:50 +02:00
Michael Gough f180facaa0 hmetis: init at 1.5 2018-07-01 18:29:55 +00:00
Michael Raskin 055a29c4a1
Merge pull request #39981 from timokau/sage-on-nixos
Sage on nixos
2018-07-01 07:37:42 +00:00
Timo Kaufmann 70ba695777 sage: replace JUPYTER_PATH patch by upstream patch
The patch was replaced by a better upstream patch that doesn't mvoe the
jupyter dir to the user's home.
2018-06-30 22:30:30 +02:00
Timo Kaufmann 398dad270a sage, arb: update sage dependencies arb and pynac
Removes the version pinning for arb and pynac by backporting the
upstream (sage) package upgrades. This necessitates a new patch for arb,
which was however already proposed and accepted upstream.
2018-06-30 17:05:56 +02:00
Luz f6a2869031 librepcb-unstable: 2017-12-29 -> 2018-06-28 (#42786)
* Update: 2017-12-29 -> 2018-06-28

* Update libs also to qt5.9

* Add required default font file

* Switch back to default Qt version
2018-06-30 13:56:12 +02:00
Ryan Mulligan 1d54dc6841 treewide: http -> https 2018-06-29 17:18:27 -07:00
Timo Kaufmann 17e6b391eb sage: 8.1 -> 8.2, use system packages 2018-06-30 01:21:31 +02:00
Timo Kaufmann 424835acc8 symmetrica: add patches 2018-06-30 01:20:46 +02:00
Théo Zimmermann 314eb884ec
coq_8_8: 8.8.0 -> 8.8.1 2018-06-29 11:10:31 +02:00
Matthew Bauer 2171fc4d55
Merge pull request #42590 from TimPut/openmvsbuildfix
openmvs: build with CGAL 4.12
2018-06-28 22:33:40 -04:00
Matthew Bauer e714f85b2f
Merge pull request #41929 from smaret/gildas
gildas: init at 201806_a
2018-06-28 22:17:07 -04:00
Matthew Bauer 574883f665
Merge pull request #42571 from iimog/hmmer
hmmer: init at 3.1b2
2018-06-28 22:00:09 -04:00
Silvan Mosberger 57bccb3cb8 treewide: http -> https sources (#42676)
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
2018-06-28 20:43:35 +02:00
Ryan Mulligan fce8f26af6 treewide: http -> https (#42665) 2018-06-27 22:12:57 +02:00
R. RyanTM d4f62f651f gromacs: 2018.1 -> 2018.2 (#42504)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/gromacs/versions.

These checks were done:

- built on NixOS
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC had a zero exit code or showed the expected version
- /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC.bash passed the binary check.
- /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC.zsh passed the binary check.
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/GMXRC.csh had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/demux.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/xplor2gmx.pl had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/gmx-completion.bash had a zero exit code or showed the expected version
- Warning: no invocation of /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/gmx-completion-gmx.bash had a zero exit code or showed the expected version
- /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2/bin/gmx passed the binary check.
- 3 of 9 passed binary check by having a zero exit code.
- 0 of 9 passed binary check by having the new version present in output.
- found 2018.2 with grep in /nix/store/illh3rp28ipz35z0wipsfc18z4m03sah-gromacs-2018.2
- directory tree listing: https://gist.github.com/1679f0362dfcc7299a6d5b8d9e76c14e
- du listing: https://gist.github.com/2f848bb0fe181676c17b61a9d5a94953
2018-06-27 19:02:19 +02:00
Timo Kaufmann 9ce041a8c7 pynac: 0.7.21 -> 0.7.22 (#42650) 2018-06-27 15:41:29 +02:00
Timo Kaufmann 2b22ecf01e palp: restrict platforms to linux (#42651) 2018-06-27 15:28:39 +02:00
Timo Kaufmann 08a59bb10d palp: fix runtime error introduced by #28029 (#42633)
After #28029 it is necessary to add "strictoverflow" to the disabled
hardening flags. That probably has something to do with the `-O3` option
in palps makefile.

This commit also adds a test to check for this regression (as it only
occured at runtime).
2018-06-27 09:42:26 +02:00
tim put 385114da68 openmvs: fix CGAL 4.12 dependency
patch executables with openMVS library path
2018-06-26 21:55:15 -06:00
Sebastien Maret 7b01e2b7d6 gildas: use internal LAPACK instead of OpenBLAS
Gildas' uv_fit task segfaults when it uses OpenBLAS. Use internal
LAPACK version instead.
2018-06-26 17:15:51 +02:00
Sebastien Maret ba2f45c182 gildas: use the standard installPhase 2018-06-26 11:09:45 +02:00
Sebastien Maret 8603f343a3 gildas: init at 201806_a 2018-06-26 11:09:45 +02:00