1
0
Fork 1
mirror of https://github.com/NixOS/nixpkgs.git synced 2024-12-12 07:34:36 +00:00
Commit graph

1752 commits

Author SHA1 Message Date
John Wiegley bee172501d
Merge pull request #37591 from vbgl/coq-88beta1
coq: init at 8.8+beta1
2018-03-23 22:09:06 -07:00
Daiderd Jordan 23d0c17130
picosat: fix darwin build
/cc ZHF #36454
2018-03-24 02:11:58 +01:00
Adam Washington 392def733b
Remove lint from Sasview package 2018-03-22 17:44:27 +00:00
Matthew Justin Bauer 64a1fd6c69
Merge pull request #37224 from matthewbauer/auto-update/jags
jags: 4.1.0 -> 4.3.0
2018-03-21 23:42:39 -05:00
Austin Seipp 011e70155b symbiyosys: 2018.03.07 -> 2018.03.21
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-03-21 16:05:10 -05:00
Ryan Mulligan 8f75a58081 verilator: 3.920 -> 3.922
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin_dbg -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_bin_dbg --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage_bin_dbg -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage_bin_dbg --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage -V` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_coverage --version` and found version 3.922
- ran `/nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922/bin/verilator_profcfunc help` got 0 exit code
- found 3.922 with grep in /nix/store/fnypnfihpivkzgwrpi3g6r7ag5psfdim-verilator-3.922
- directory tree listing: https://gist.github.com/04b5044a54bb4ff549696cbcd57cd88e
2018-03-21 13:09:37 -05:00
Vincent Laporte 6845b248d9 coq: init at 8.8+beta1 2018-03-21 18:06:28 +00:00
Adam Washington 01c1385dec
Make xhtml2pdf its own package in python-packages
xhtml2pdf now uses the main package html5lib with just an override to
pull the correct version number.
2018-03-21 13:46:17 +00:00
timor 42368e23f5 workcraft: init at 3.1.9 2018-03-21 14:27:12 +01:00
Matthew Justin Bauer 7452996ac6
Merge pull request #36381 from bgamari/bump-kicad
kicad-unstable: Bump git commit
2018-03-19 15:28:58 -05:00
Matthew Justin Bauer 964c32bcb3
Merge pull request #36846 from jbedo/snpeff
snpeff: 4.3t -> 4.3q
2018-03-19 12:26:33 -05:00
Jörg Thalheim 6e22dd9ee8
Merge pull request #37356 from volth/gephi-from-sources
gephi: build from sources
2018-03-19 11:23:43 +00:00
Matthew Justin Bauer 9f58d17d10
Merge pull request #37079 from ryantm/auto-update/picard-tools
picard-tools: 2.17.10 -> 2.17.11
2018-03-19 04:04:50 -05:00
volth 1e2eec169a gephi: build from sources 2018-03-19 08:45:24 +00:00
Matthew Justin Bauer 04e6a14df4
Merge pull request #36744 from samdroid-apps/add-nasc
nasc: init at 0.4.6
2018-03-19 03:41:24 -05:00
Gabriel Ebner faf094adef
Merge pull request #36435 from timokau/origin/ecm-update
ecm: 6.4.4 -> 7.0.4
2018-03-18 13:08:34 +01:00
Gabriel Ebner 7072d11391
Merge pull request #37194 from ryantm/auto-update/gp2c
gp2c: 0.0.10 -> 0.0.10pl1
2018-03-18 12:04:08 +01:00
Gabriel Ebner 5693c5da8e
Merge pull request #36986 from ryantm/auto-update/fricas
fricas: 1.3.2 -> 1.3.3
2018-03-17 13:56:26 +01:00
Gabriel Ebner 5df4f227ec
Merge pull request #37009 from ryantm/auto-update/igv
igv: 2.4.8 -> 2.4.9
2018-03-17 13:43:23 +01:00
Gabriel Ebner fe7d82e6a6
Merge pull request #36933 from Ma27/fix-aspino
aspino: fix build
2018-03-17 13:06:23 +01:00
Maximilian Bosch 29bc0a00a1
aspino: fix build
Aspino patched `libglucose` for their own uses, however they currently
depend on glucose v4.0.
(see e31c3b4e57/patches)

The patches don't apply properly on `glucose-4.1` anymore, furthermore
the new source directory caused the `bootstrap.sh` from `aspino` which
was supposed to apply the patches and recompile the setup to break.

Furthermore some minor changes to the derivation were introduced:

- upgraded from `2016-01-31` to `2017-03-09`
- the name contains an `-unstable-` infix as upstream has no releases
- instead of a `patchPhase` the `postPatch` hook will be used for
  `substituteInPlace` to keep advanced patching features from `nixpkgs`
  available.
- `patchShebangs` will be called to avoid impurities because of the
  implicit reliance on `/bin/sh`
- added myself as second maintainer to have more people available in
  case of any further breackage

See https://hydra.nixos.org/build/70688471/log
See ticket #36453
2018-03-17 13:02:51 +01:00
Matthew Bauer e2d12274c2 jags: 4.1.0 -> 4.3.0
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:
- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 4.3.0 with grep in /nix/store/aw897502z5bcn6dw6rp7jca90flfrjab-JAGS-4.3.0
2018-03-17 02:02:11 -05:00
Austin Seipp c108e67825
Merge pull request #37063 from ryantm/auto-update/ltl2ba
ltl2ba: 1.1 -> 1.2b1
2018-03-16 17:12:02 -05:00
Ryan Mulligan 3e2f544c39 gp2c: 0.0.10 -> 0.0.10pl1
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -h` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -v` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c -h` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run -h` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run --help` got 0 exit code
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run -h` and found version 0.0.10pl1
- ran `/nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1/bin/gp2c-run --help` and found version 0.0.10pl1
- found 0.0.10pl1 with grep in /nix/store/phmgqwmf0fa3q2d62zq220zpgi64hssj-gp2c-0.0.10pl1
- directory tree listing: https://gist.github.com/27f1364bf90110b801070fcb28c64e0e
2018-03-16 12:51:03 -07:00
Peter Simons 276001c51b
Merge pull request #37180 from peti/r-updates
Update R and its packages
2018-03-16 17:37:19 +01:00
Tuomas Tynkkynen ef64208eba Merge commit '3ab2949' from staging into master
Conflicts:
	pkgs/development/compilers/llvm/6/llvm.nix
	pkgs/servers/home-assistant/component-packages.nix
2018-03-15 22:30:56 +02:00
Peter Simons d46a4b9829 R: 3.4.3 -> 3.4.4 2018-03-15 18:32:14 +01:00
Ryan Mulligan 892244dda0 picard-tools: 2.17.10 -> 2.17.11
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.17.11 with grep in /nix/store/xmlvcz212yl8bij12jpqibhv8c8mqabs-picard-tools-2.17.11
- found 2.17.11 in filename of file in /nix/store/xmlvcz212yl8bij12jpqibhv8c8mqabs-picard-tools-2.17.11
2018-03-15 01:16:28 -07:00
Ryan Mulligan 9e0ce6562a ltl2ba: 1.1 -> 1.2b1
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 1.2b1 in filename of file in /nix/store/jx5s7w6bmd6lfqvxl2lly3ggd4k9ncax-ltl2ba-1.2b1
2018-03-14 21:06:53 -07:00
Joachim F 51474dbf7c
Merge pull request #36627 from ryantm/auto-update/ngspice
ngspice: 26 -> 27
2018-03-14 21:13:22 +00:00
Joachim F c1ce856fa4
Merge pull request #36591 from ryantm/auto-update/gtkwave
gtkwave: 3.3.86 -> 3.3.87
2018-03-14 21:04:51 +00:00
Joachim F b46fe9398b
Merge pull request #36658 from ryantm/auto-update/paml
paml: 4.9c -> 4.9g
2018-03-14 20:20:47 +00:00
Joachim F d703988c2b
Merge pull request #36483 from ryantm/auto-update/calc
calc: 2.12.6.3 -> 2.12.6.6
2018-03-14 19:37:27 +00:00
Ryan Mulligan 9b4c82d366 igv: 2.4.8 -> 2.4.9
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 2.4.9 with grep in /nix/store/q5c9jyg6gc4v3ns7rw5lxj7v4v916a7f-igv-2.4.9
- found 2.4.9 in filename of file in /nix/store/q5c9jyg6gc4v3ns7rw5lxj7v4v916a7f-igv-2.4.9
2018-03-14 12:04:23 -07:00
Ryan Mulligan bf06f445dd fricas: 1.3.2 -> 1.3.3
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/fricas -h` got 0 exit code
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/fricas -h` and found version 1.3.3
- ran `/nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3/bin/efricas --help` got 0 exit code
- found 1.3.3 with grep in /nix/store/gbxxlzids227g9xaiqyqp2hp8ccmkfvq-fricas-1.3.3
2018-03-14 08:04:41 -07:00
Tuomas Tynkkynen 2fec9c6e29 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/development/tools/build-managers/conan/default.nix
2018-03-13 23:04:18 +02:00
volth 7ec0471242 treewide: s/xlibs/xorg/g (#36889) 2018-03-13 10:16:03 +00:00
Daiderd Jordan a6bf2b21d5
Merge pull request #36873 from jfrankenau/update-bcal
bcal: 1.7 -> 1.8
2018-03-12 19:49:20 +01:00
Johannes Frankenau 59cc47d802 bcal: 1.7 -> 1.8
The tests failed for a good reason on Darwin and should not have been
disabled. The issue has been resolved upstream with version 1.8 which
now also supports AArch64.
2018-03-12 18:36:26 +01:00
Vincent Laporte 903f4dd3d4
clingo: fix build on non-sandboxed darwin 2018-03-12 17:07:18 +00:00
Vincent Laporte eedc173276
clingo: fix URL 2018-03-12 16:51:54 +00:00
Michael Raskin fafeac185b tptp: 7.0.0 -> 7.1.0 2018-03-12 16:58:21 +01:00
Adam Washington 73ed353d27 sasview: init at 4.1.2
Sasview is a data fitting and analysis package for small angle
scattering data.  More information can be found at
https://www.sasview.org.

There is some unfortunate cruft to this commit.  SasView uses the
xhtml2pdf python package, which has a specific version of html5lib as
a dependency.  This module manually loads that version into sasview.
I haven't made xhtml2pdf available as its own package due to these
circumstances.
2018-03-12 09:22:06 +00:00
Justin Bedo f48ff649fe
snpeff: 4.3t -> 4.3q 2018-03-12 16:03:44 +11:00
Jan Malakhovski 7079e744d4 Merge branch 'master' into staging
Resolved the following conflicts (by carefully applying patches from the both
branches since the fork point):

   pkgs/development/libraries/epoxy/default.nix
   pkgs/development/libraries/gtk+/3.x.nix
   pkgs/development/python-modules/asgiref/default.nix
   pkgs/development/python-modules/daphne/default.nix
   pkgs/os-specific/linux/systemd/default.nix
2018-03-10 20:38:13 +00:00
Michael Raskin d44221d768
Merge pull request #36726 from ryantm/auto-update/yarp
yarp: 2.3.68 -> 2.3.70.2
2018-03-10 18:41:05 +00:00
Ben Gamari d39cd7aad5 kicad-unstable: 2017-12-11 -> 2018-03-10
This is much closer to what will become the final kicad 5 release.
2018-03-10 13:13:18 -05:00
Michael Raskin 2093d4781d sage: set platforms to the set where I can build it; Hydra ARM builds seem to fail 2018-03-10 13:50:11 +01:00
Sam Parkinson 28a67ec16a
nasc: init at 0.4.6 2018-03-10 22:21:36 +11:00
Ryan Mulligan acf77c3888 yarp: 2.3.68 -> 2.3.70.2
Semi-automatic update generated by https://github.com/ryantm/nix-update tools. These checks were done:

- built on NixOS
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpidl_rosmsg -h` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpidl_rosmsg --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpidl_rosmsg help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpserver --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarp help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarp version` and found version 2.3.70.2
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarp-config --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarp-config --version` and found version 2.3.70.2
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpdev -h` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpdev --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpdev help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpmanager-console --help` got 0 exit code
- ran `/nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2/bin/yarpdatadumper --help` got 0 exit code
- found 2.3.70.2 with grep in /nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2
- found 2.3.70.2 in filename of file in /nix/store/bp68k0rdxw13rxgy93lqlqmrmprz272g-yarp-2.3.70.2
2018-03-09 19:41:31 -08:00
Graham Christensen 05db7ca765
Merge pull request #36553 from ryantm/auto-update/gmsh
gmsh: 3.0.5 -> 3.0.6
2018-03-09 17:25:29 -05:00
Graham Christensen d2429e0045
Merge pull request #36537 from ryantm/auto-update/ginac
ginac: 1.7.2 -> 1.7.4
2018-03-09 17:20:53 -05:00
Daiderd Jordan 43be4ebfb1
Merge pull request #36581 from matthewbauer/darwin-fixes
darwin: fixes
2018-03-09 19:32:54 +01:00
Ryan Mulligan 49272f60dd paml: 4.9c -> 4.9g
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 4.9g in filename of file in /nix/store/70p59yxnlzhbj8ig1ax8lrrsdbcf37zp-paml-4.9g
2018-03-09 07:22:27 -08:00
Ryan Mulligan 9e3690e87c ngspice: 26 -> 27
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 27 with grep in /nix/store/73sh9hf5c9fjgh962pd1ac16kr8dvzxg-ngspice-27
- found 27 in filename of file in /nix/store/73sh9hf5c9fjgh962pd1ac16kr8dvzxg-ngspice-27
2018-03-09 02:55:13 -08:00
Austin Seipp de1cb85b20 symbiyosys: 2018.02.04 -> 2018.03.07
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-03-08 21:23:20 -06:00
Ryan Mulligan 7844ae2366 gtkwave: 3.3.86 -> 3.3.87
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/evcd2vcd --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fst2vcd --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2fst help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/fstminer --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2miner --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/lxt2vcd --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/shmidcat -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/shmidcat --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2lxt2 help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vcd2vzt help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vzt2vcd --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vztminer --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave -V` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave -v` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave --version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave version` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave -h` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave --help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/gtkwave help` and found version 3.3.87
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vermin -h` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vermin --help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vermin help` got 0 exit code
- ran `/nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87/bin/vermin -h` and found version 3.3.87
- found 3.3.87 with grep in /nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87
- found 3.3.87 in filename of file in /nix/store/4zxs7f77kc86xgy6k86cb8471l2kndax-gtkwave-3.3.87
2018-03-08 17:24:39 -08:00
Ryan Mulligan 695a62e777 gromacs: 4.6.7 -> 2018
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.bash -h` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.bash --help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.bash help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.zsh -h` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.zsh --help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/GMXRC.zsh help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx -h` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx help` got 0 exit code
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx --version` and found version 2018
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx -h` and found version 2018
- ran `/nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018/bin/gmx help` and found version 2018
- found 2018 with grep in /nix/store/i2ls9z094j6a3vqvq6gz4hyhl86dh31d-gromacs-2018
2018-03-08 15:30:04 -08:00
Matthew Bauer 54e2c28b09 darwin: disable broken packages 2018-03-08 17:21:17 -06:00
wchresta c6d3f0d3c6 tamarin-prover: 1.3.0 -> 1.3.1 2018-03-08 21:03:18 +01:00
Ryan Mulligan 365a2e5acc gmsh: 3.0.5 -> 3.0.6
Semi-automatic update. These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.0.6 with grep in /nix/store/ha4gl4kswiq7pz4chb1ba9ixb51rcdsn-gmsh-3.0.6
- found 3.0.6 in filename of file in /nix/store/ha4gl4kswiq7pz4chb1ba9ixb51rcdsn-gmsh-3.0.6
2018-03-08 11:29:17 -08:00
Ryan Mulligan e729cebdc9 ginac: 1.7.2 -> 1.7.4
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar -h` got 0 exit code
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar --help` got 0 exit code
- ran `/nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4/bin/viewgar help` got 0 exit code
- found 1.7.4 with grep in /nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4
- found 1.7.4 in filename of file in /nix/store/36kx0mbdfnf20mfrcicwgplcz0sibvpk-ginac-1.7.4
2018-03-08 08:40:52 -08:00
Ryan Mulligan 89fca29099 gfan: 0.6 -> 0.6.2
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2/bin/gfan --help` got 0 exit code
- found 0.6.2 with grep in /nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2
- found 0.6.2 in filename of file in /nix/store/gdzrfmvi5x26is0hbv0yyg5s61cxm7dy-gfan-0.6.2
2018-03-08 07:52:17 -08:00
Ryan Mulligan 6edbf98d34 calc: 2.12.6.3 -> 2.12.6.6
Semi-automatic update. These checks were done:

- built on NixOS
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -V` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere --version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere -h` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere --help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/4dsphere help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/fproduct -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/fproduct --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/fproduct help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/mersenne -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/mersenne --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/mersenne help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/piforever -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/piforever -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus --version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus version` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus --help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/plus help` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/powerterm -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/powerterm --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/powerterm help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/simple -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/cscript/square -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/calc -v` and found version 2.12.6.6
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped -h` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped --help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped help` got 0 exit code
- ran `/nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6/bin/.calc-wrapped -v` and found version 2.12.6.6
- found 2.12.6.6 with grep in /nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6
- found 2.12.6.6 in filename of file in /nix/store/mdjaq6pgxp9qrfg9s7iaavj2rsvjqh9q-calc-2.12.6.6
2018-03-07 20:08:56 -08:00
Timo Kaufmann 77d1fdb2c1 ecm: 6.4.4 -> 7.0.4 2018-03-07 18:28:26 +01:00
Robin Gloster 50cdd5f02b
shogun: add patch for json-c 0.13 2018-03-05 22:00:03 +01:00
Vladimír Čunát 565bd805e6
Merge branch 'master' 2018-03-05 14:53:27 +01:00
Roger Qiu 30ba063dc3 gpredict: Added hamlib to buildInputs to control radios, and wrapped with wrapGAppsHook to fix gnome errors 2018-03-04 16:30:21 +11:00
Timo Kaufmann 4f239f9d49 sage: Make build more platform independant 2018-03-04 01:36:31 +01:00
Austin Seipp 7270f2139a tlaplus: init at 1.5.6
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-03-02 21:20:54 -06:00
Frederik Rietdijk 810dd0f984 Merge remote-tracking branch 'upstream/master' into HEAD 2018-03-01 20:00:42 +01:00
Ryan Mulligan a4809a57e1 root: 6.10.08 -> 6.12.06
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/genreflex --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/pq2 -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/rootn.exe --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/xpdtest --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root.exe --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/root-config --version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` got 0 exit code
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -V` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -v` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory version` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory -h` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory --help` and found version 6.12.06
- ran `/nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06/bin/prepareHistFactory help` and found version 6.12.06
- found 6.12.06 with grep in /nix/store/4gcl610xv4sj6vzwnksm825qp29f8ibx-root-6.12.06

cc "@veprbl"
2018-03-01 15:39:08 +01:00
Tuomas Tynkkynen b8b2225f6b Merge remote-tracking branch 'upstream/master' into staging 2018-03-01 06:09:20 +02:00
Ryan Mulligan 75072efb4b tulip: 4.9.0 -> 5.1.0
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config -h` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --help` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config help` got 0 exit code
- ran `/nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0/bin/tulip-config --version` and found version 5.1.0
- found 5.1.0 with grep in /nix/store/z17wdp6l55y3b18875c9zj2pw1lywrqd-tulip-5.1.0

cc ""
2018-02-28 20:33:39 +00:00
Tuomas Tynkkynen 34f95d92a2 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/applications/misc/pytrainer/default.nix
	pkgs/development/tools/pew/default.nix
	pkgs/tools/misc/you-get/default.nix
2018-02-28 20:52:49 +02:00
Ryan Mulligan 0c69b50356 picard-tools: 2.17.4 -> 2.17.10
Semi-automatic update. These checks were performed:

- built on NixOS
- found 2.17.10 with grep in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10
- found 2.17.10 in filename of file in /nix/store/f74zildbrr99qmp5qkb579x9159n88c6-picard-tools-2.17.10

cc "@jbedo"
2018-02-28 15:02:46 +00:00
Ryan Mulligan 2fe9ca05e4 pari: 2.9.3 -> 2.9.4
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/tex2mail help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp --help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gphelp help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` got 0 exit code
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -V` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -v` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --version` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 -h` and found version 2.9.4
- ran `/nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4/bin/gp-2.9 --help` and found version 2.9.4
- found 2.9.4 with grep in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4
- found 2.9.4 in filename of file in /nix/store/v2rvjr4kl79kmn1w70lj7zf0dz00p3mf-pari-2.9.4

cc "@ertes @raskin @AndersonTorres"
2018-02-28 14:27:07 +00:00
Peter Simons 09f18d3baf
Merge pull request #36094 from ryantm/auto-update/wxmaxima-17.10.1-to-18.02.0
wxmaxima: 17.10.1 -> 18.02.0
2018-02-28 13:40:02 +01:00
Ryan Mulligan 9394e70b0d verilator: 3.900 -> 3.920
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin_dbg -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_bin_dbg --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage_bin_dbg -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage_bin_dbg --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage -V` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_coverage --version` and found version 3.920
- ran `/nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920/bin/verilator_profcfunc help` got 0 exit code
- found 3.920 with grep in /nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920
- found 3.920 in filename of file in /nix/store/j0sz8wy56xhm5agjgjrzy3r35qzyrb5s-verilator-3.920

cc "@thoughtpolice"
2018-02-28 12:36:17 +01:00
Ryan Mulligan 84091451ec wxmaxima: 17.10.1 -> 18.02.0
Semi-automatic update. These checks were performed:

- built on NixOS
- found 18.02.0 with grep in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0
- found 18.02.0 in filename of file in /nix/store/q3pav5f98v0imlk0bsr295k8xf2w8njr-wxmaxima-18.02.0

cc "@peti"
2018-02-27 19:05:41 -08:00
Frederik Rietdijk 405407fcf5
Merge pull request #35680 from NixOS/python-unstable
Python: last major updates package set
2018-02-27 09:16:47 +00:00
Frederik Rietdijk b45845f228
Merge pull request #35713 from ryantm/auto-update/fricas-1.3.1-to-1.3.2
fricas: 1.3.1 -> 1.3.2
2018-02-27 08:12:42 +00:00
Frederik Rietdijk 671e405332
Merge pull request #35720 from ryantm/auto-update/igv-2.4.6-to-2.4.8
igv: 2.4.6 -> 2.4.8
2018-02-27 08:09:50 +00:00
Ryan Mulligan be7cd20d3c lp_solve: 5.5.2.0 -> 5.5.2.5
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` got 0 exit code
- ran `/nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5/bin/lp_solve -h` and found version 5.5.2.5
- found 5.5.2.5 with grep in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5
- found 5.5.2.5 in filename of file in /nix/store/n5jgpvmzaqdfxdfawfi5rf8vav1qgi7w-lp_solve-5.5.2.5

cc "@smironov"
2018-02-26 21:57:53 -08:00
Ryan Mulligan d1dc4cae54 igv: 2.4.6 -> 2.4.8
Semi-automatic update. These checks were performed:

- built on NixOS
- found 2.4.8 with grep in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8
- found 2.4.8 in filename of file in /nix/store/3vwg5hpprkm3v345fy05gxdjicfakql7-igv-2.4.8

cc "@mimadrid"
2018-02-26 19:11:52 -08:00
Frederik Rietdijk cd528ddd8e python: spyder: 3.2.6 -> 3.2.7 2018-02-26 18:44:17 +01:00
Ryan Mulligan 4440d28fbd fricas: 1.3.1 -> 1.3.2
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` got 0 exit code
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/fricas -h` and found version 1.3.2
- ran `/nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2/bin/efricas --help` got 0 exit code
- found 1.3.2 with grep in /nix/store/8zf9gq9g97prcmq27qln6vw7w4aqigw5-fricas-1.3.2

cc "@sprock"
2018-02-26 06:28:48 -08:00
adisbladis e046d8bc08
Merge pull request #35555 from ryantm/auto-update/bcftools-1.6-to-1.7
bcftools: 1.6 -> 1.7
2018-02-26 17:39:46 +08:00
Ryan Mulligan 72a22296dd cryptoverif: 1.22 -> 1.28
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28/bin/cryptoverif --help` got 0 exit code
- found 1.28 with grep in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28
- found 1.28 in filename of file in /nix/store/p13fvkr38qrak3ng6lpmj4z1palhr2in-cryptoverif-1.28
2018-02-26 08:32:20 +01:00
Jan Tojnar c65cd765f6
gpredict: 1.3 → 2.2.1 2018-02-26 05:26:41 +01:00
adisbladis e8d0563638
Merge pull request #35566 from ryantm/auto-update/bowtie2-2.3.4-to-2.3.4.1
bowtie2: 2.3.4 -> 2.3.4.1
2018-02-26 09:47:03 +08:00
adisbladis 780e1a34e1
Merge pull request #35583 from ryantm/auto-update/cbc-2.9.5-to-2.9.9
cbc: 2.9.5 -> 2.9.9
2018-02-26 09:33:53 +08:00
Ryan Mulligan 79795b44f9 cbc: 2.9.5 -> 2.9.9
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/clp help` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` got 0 exit code
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc version` and found version 2.9.9
- ran `/nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9/bin/cbc help` and found version 2.9.9
- found 2.9.9 with grep in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
- found 2.9.9 in filename of file in /nix/store/7q93md698w3bnl212mk38rq2l6k7wav6-cbc-2.9.9
2018-02-25 14:03:37 -08:00
Nikolay Amiantov 7f1b8d744f cntk: fix build without CUDA 2018-02-25 22:50:20 +03:00
Nikolay Amiantov 3179002f61 mxnet: 0.11.0 -> 1.1.0 2018-02-25 22:24:09 +03:00
Nikolay Amiantov 6f96122d5b caffe: add nccl support 2018-02-25 22:24:09 +03:00
Nikolay Amiantov 25079ad238 caffe: depend on opencv3
openblas is used since it's propagated from OpenCV and ATLAS compiled without
architecture-specific optimizations is generally slower than OpenBLAS as I
heard.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov 1bfca90bf7 cntk: 2.2 -> 2.4
Comment for `broken` indicates that it never worked at all, which is strange
since on my machine it did. Anyway it works now for me.
2018-02-25 22:24:09 +03:00
Nikolay Amiantov 08f8ad26b3 treewide: unquote homepage in my packages
I don't like this personally but we have #27809 as a precedent.
2018-02-25 22:24:08 +03:00
Ryan Mulligan bc730862d5 bowtie2: 2.3.4 -> 2.3.4.1
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-align-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-s --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect-l --help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -V` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect -v` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-inspect help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -V` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build -v` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2-build help` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` got 0 exit code
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --version` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 -h` and found version 2.3.4.1
- ran `/nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1/bin/bowtie2 --help` and found version 2.3.4.1
- found 2.3.4.1 with grep in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1
- found 2.3.4.1 in filename of file in /nix/store/3dhsbc2qzhls7p7xl8x5jzjk51l6y891-bowtie2-2.3.4.1
2018-02-25 09:45:04 -08:00
Ryan Mulligan 9af7602b8a bcftools: 1.6 -> 1.7
Semi-automatic update. These checks were performed:

- built on NixOS
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -v` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools version` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools -h` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools --help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/bcftools help` and found version 1.7
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats -h` got 0 exit code
- ran `/nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7/bin/plot-vcfstats --help` got 0 exit code
- found 1.7 with grep in /nix/store/5yasri83ahcvhx06dv92fpzmxay9c833-bcftools-1.7
2018-02-25 09:02:06 -08:00
Jan Tojnar a31d98f312
tree-wide: autorename gnome packages to use dashes 2018-02-25 17:41:16 +01:00
Alexander V. Nikolaev 0acec7e984 treewide: transition mesa to libGLU_combined 2018-02-24 17:06:49 +02:00
Alexander V. Nikolaev 1bc1909e5b treewide: transition from mesa_glu to libGLU 2018-02-24 17:05:43 +02:00
Gabriel Ebner f5b173ffbc qalculate-gtk: 2.1.0 -> 2.2.1 2018-02-24 11:54:53 +01:00
Timo Kaufmann 89162cdd29 sage: explicitly use gfortran6
The recent change from gfortran=gfortran6 to gfortran=gfortran7 broke
the build.
2018-02-23 17:00:21 +01:00
Johannes Frankenau 74029a21bf bcal: init at 1.7 2018-02-21 00:05:16 +01:00
Vladimír Čunát b5aaaf87a7
Merge staging and PR #35021
It's the last staging commit (mostly) built on Hydra,
and a minimal fix for Darwin regression in pysqlite.
2018-02-16 09:13:12 +01:00
John Wiegley 90252481bf coq: 8.7.1 -> 8.7.2 2018-02-15 23:12:43 -08:00
Vincent Laporte e75009ecdc
eprover: fix build in non-GCC environments 2018-02-14 22:46:12 +00:00
Frederik Rietdijk 672bb6b4ab Merge remote-tracking branch 'upstream/master' into HEAD 2018-02-14 21:30:08 +01:00
Jörg Thalheim 6ec8fe0408 z3: also needs setuptools 2018-02-14 10:01:25 +00:00
Timo Kaufmann 0713bde50f sage: Don't build docs by default
This makes the HTML-docs an default-off option. Inline documentation
(`matrix-plot??`) is still available and HTML docs are available online.

Motivation: Get below the Hydra output size limit.
2018-02-13 17:52:41 +01:00
Will Dietz 2974ed9266 avy: fixes to work with clang and musl 2018-02-13 09:44:52 -06:00
Will Dietz cbdd20878e cvc4: build in parallel 2018-02-13 09:44:45 -06:00
Will Dietz 12e60c232a cvc4: patch up fpu_control usage 2018-02-13 09:44:45 -06:00
Will Dietz 4c767417ea picosat: fix ar and ranlib usage for cross 2018-02-13 09:44:32 -06:00
Will Dietz 36b2706916 picosat: fixup include for unistd.h 2018-02-13 09:44:32 -06:00
Will Dietz 46cbded0de boolector: patch usage of ar and ranlib for cross
eep.
2018-02-13 09:44:32 -06:00
Will Dietz 9138d055bf boolector: fix missing stdint.h include 2018-02-13 09:44:31 -06:00
Jörg Thalheim a0a3f674a7
Merge pull request #34094 from markuskowa/octopus-pr
octopus: init at 7.2
2018-02-10 14:14:01 +00:00
Jörg Thalheim 08d1400816
Merge pull request #34530 from unode/samtools-old
samtools-old: init at 0.1.19
2018-02-10 08:34:26 +00:00
Jörg Thalheim 80b096b2b3
Merge pull request #34531 from unode/raxml
RAxML: init at 8.2.11 (SSE3 & MPI)
2018-02-10 08:32:19 +00:00
Frederik Rietdijk 50a9d51a09 Merge commit '30d031b5d8d05422586043c3f105f4d9110e4f59' into HEAD 2018-02-08 12:14:07 +01:00
Peter Simons fa23ff4a7d
Merge pull request #34651 from mnacamura/r-darwin-libcxx
R: add libcxx to default LDFLAGS and CPPFLAGS on Darwin
2018-02-07 08:31:10 +01:00
Tuomas Tynkkynen 4c6c919a31 Merge remote-tracking branch 'upstream/master' into HEAD
Conflicts:
	pkgs/os-specific/linux/kernel/generic.nix
2018-02-07 03:41:24 +02:00
Renato Alves 154d1d2f19
samtools: 1.6 -> 1.7 2018-02-06 15:38:00 +01:00
Mitsuhiro Nakamura f4a031c63f R: add libcxx to default LDFLAGS and CPPFLAGS on Darwin 2018-02-06 18:57:12 +09:00
Tuomas Tynkkynen 9548028a22 Merge remote-tracking branch 'upstream/master' into staging
Conflicts:
	pkgs/os-specific/linux/cpupower/default.nix
2018-02-06 04:11:23 +02:00
Timo Kaufmann 272e930827 sage: fix non-deterministic build failures
The build was failing on some machines because of a `find` command that
touched files in different orders on different machines.

That confused `make`s timestamp mechanism.
2018-02-05 15:03:24 +01:00
Austin Seipp 0e371a60a5 symbiyosys: 2018.01.10 -> 2018.02.04
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-02-04 11:59:35 -06:00
Frederik Rietdijk c1d79509a0
Merge pull request #34553 from NixOS/python-unstable
Python package updates
2018-02-04 13:29:23 +00:00
Frederik Rietdijk aaa50d506e python.pkgs.spyder: fix expression
Note I still get
```
This application failed to start because it could not find or load the
Qt platform plugin "xcb"
in "".
```
but that may be because I run it from the store which is not support for
Qt5 applications.
2018-02-04 10:17:35 +01:00
Bjørn Forsman 6b834384f6 bitscope: create derivations with version info
So far the store paths produced by the bitscope derivations have been
version-less. Fix it.
2018-02-03 21:14:50 +01:00
Frederik Rietdijk c7f535c82d spyder: 3.2.4 -> 3.2.6 2018-02-03 17:43:30 +01:00
Renato Alves 65ea5f8857
samtools_0_1_19: init at 0.1.19
samtools-1.5 already exists but some software requires the older version
2018-02-02 21:49:50 +01:00
Renato Alves 05889c52b9
RAxML: init at 8.2.11 (SSE3 & MPI)
This can potentially be extended to cover all the other compilation
targets. SSE3-PTHREADS and MPI being the most commonly used.
2018-02-02 18:31:40 +01:00
Vladimír Čunát c9171e5a4c
Merge branch 'master' into staging
Hydra: ?compare=1430035
2018-01-30 19:51:33 +01:00
Renato Alves b22e4976cb
muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
Markus Kowalewski ec6e7c6eeb
octopus: init at 7.2 2018-01-27 16:23:04 -08:00
Tuomas Tynkkynen c3a658deb1 Merge remote-tracking branch 'upstream/master' into staging 2018-01-27 21:53:16 +02:00
Alexey Shmalko 38fbc93f46
Merge pull request #34156 from arcadio/star
star: init at 2.5.3a
2018-01-27 17:02:16 +02:00
Vladimír Čunát 2d2dbe083f
Merge branch 'master' into staging
Hydra: ?compare=1429281
2018-01-27 09:14:22 +01:00
Timo Kaufmann b223662ad1 sage: 8.0 -> 8.1, fix sandbox build
The sandboxed build was failing, because it relied heavily on
/usr/bin/env. This is fixed with a lot of shebang patching (both
to system packages and to sage-internal packages).
2018-01-26 14:42:24 +01:00
adisbladis 7a2d35d9db
Merge pull request #34119 from arcadio/master
igv: 2.3.98 -> 2.4.6
2018-01-25 18:33:49 +08:00
Samuel Leathers efdb0983da
Merge pull request #34199 from arcadio/kallisto
kallisto: init at 0.43.1
2018-01-24 20:43:24 -07:00
Arcadio Rubio García a7333e9ced kallisto: init at 0.43.1 2018-01-24 16:16:46 +00:00
Arcadio Rubio García 72d675b23c star: init at 2.5.3a 2018-01-24 16:07:15 +00:00
Frederik Rietdijk 769342b37b Merge remote-tracking branch 'upstream/master' into HEAD 2018-01-24 14:17:49 +01:00
Daiderd Jordan 5569851745
R: fix dylib install_name on darwin 2018-01-24 00:23:16 +01:00