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1227 commits

Author SHA1 Message Date
John Wiegley 62934023c3
coq_HEAD: Update to the latest commit as of 2016-12-13 2016-12-13 08:09:23 -08:00
John Wiegley 360234dab6
coq_8_6: new package, based on Coq 8.6rc1 2016-12-13 07:27:15 -08:00
Eelco Dolstra c5b96ca801 minisat: Fix build on Darwin 2016-12-09 19:57:07 +01:00
Gabriel Ebner a2210a9efd lean: init at 2016-12-08 2016-12-08 10:30:28 -05:00
Gabriel Ebner ce2a9a8f9b lean2: 2016-07-05 -> 2016-11-29 
Renamed from lean since upstream renamed it as well.  The lean attribute
in nixpkgs will now refer to the new lean 3 version.
 2016-12-08 10:30:28 -05:00
Michael Raskin 3a98749bd1 pari: 2.9.0 -> 2.9.1 2016-12-08 16:15:18 +01:00
Vincent Laporte 431c564993 hol_light: fix build with Camlp5-6.17 2016-11-29 18:34:21 +00:00
Nicolò Balzarotti f390d68b75 yarp: 2.3.66.1 -> 2.3.68 2016-11-28 17:03:19 +01:00
Michael Raskin fcc5a4d3b8 Merge pull request #20672 from AndersonTorres/pari 
pari/gp: 2.7.6 -> 2.9.0
 2016-11-26 13:34:15 +00:00
Ole Krüger a31c37c759 [mathematica] 10.0.2 -> 11.0.1 2016-11-25 12:13:41 +01:00
AndersonTorres d395439a10 pari/gp: 2.7.6 -> 2.9.0 
Adding gp2c compiler, too.
 2016-11-24 22:44:56 -02:00
Vladimír Čunát 4c19651108
Merge #20264: root: fix environment setup 2016-11-14 22:27:09 +01:00
Justin Bedo a6d6a3972f
plink-ng: init at 1.90b3 2016-11-14 20:28:39 +11:00
Shea Levy 2ded9f3f7b coq: Improve emacs buffer handling 2016-11-13 14:01:01 -05:00
Austin Seipp 0bdc0143fe nixpkgs: proverif 1.94 -> 1.95 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-11-10 03:45:51 +00:00
Frederik Rietdijk 3b5d5041ef Merge pull request #20267 from jbedo/master 
Fix bcftools installation prefix
 2016-11-09 21:57:46 +01:00
Gabriel Ebner 8c4aee4c79 z3: 4.4.1 -> 4.5.0 2016-11-08 16:14:16 -05:00
Justin Bedo ec31e2cc27
Fix bcftools installation prefix 2016-11-09 08:03:04 +11:00
Tim Steinbach 6d11e8ed4c
Remove pal2nal 
No longer build/exists
 2016-11-03 21:58:47 -04:00
Tim Steinbach c36a1d6502
paml: 4.2a -> 4.9c 2016-11-03 21:33:19 -04:00
Vincent Laporte b028b5f4ef coq-8.5: ease the selection of an older (patch level) version 2016-11-02 19:39:22 +01:00
Vincent Laporte b840da02cd coq: build and install the votour utility 2016-11-02 19:23:15 +01:00
Vincent Laporte da68cc24f0 coq: 8.5pl2 -> 8.5pl3 2016-11-02 19:23:15 +01:00
vbgl 7f241baaaf Merge pull request #19902 from dtzWill/update/yices 
yices: 2.3.1 -> 2.5.1
 2016-10-31 09:35:21 +01:00
Will Dietz 0443affe17 yices: Add darwin to meta.platforms 2016-10-30 13:38:07 -05:00
Dmitry Kalinkin 9434ec5441
root: fix environment setup 
1) s/envHook/postHook/
2) patch to not set $p that fixes nested ```nix-shell -p root``` calls
 2016-10-29 14:47:32 -04:00
Ertugrul Söylemez 9c8f6fb4fb pari-unstable: 2.8.0 -> 2.8.1, "alpha" -> "unstable". 2016-10-27 14:48:03 +02:00
Michael Raskin f9f23084d9 pari_alpha: fix source link 2016-10-27 12:17:16 +02:00
Will Dietz 3cf27a654a yices: Build in parallel, run tests, fix test shebang. 2016-10-26 13:01:21 -05:00
Will Dietz 8584ec97ed yices: fix install target by using 'true' as ldconfig 2016-10-26 12:59:34 -05:00
Will Dietz 1f89121551 yices: 2.3.1 -> 2.5.1 2016-10-26 12:59:06 -05:00
Frederik Rietdijk 7077a270bf Merge remote-tracking branch 'upstream/master' into HEAD 2016-10-26 13:06:43 +02:00
Michael Raskin 28aa92de64 maxima: support building with ECL; optionally support building maxima.fas when building with ECL 2016-10-26 11:06:41 +02:00
Michael Raskin 36804c75e4 singular: Wrap executables instead of symlinking 
This way config scripts can fidn out their own location
 2016-10-26 11:06:40 +02:00
Michael Raskin 2bed05d8e1 singular: add an option to install as libsingular 2016-10-26 11:06:40 +02:00
Michael Raskin 8e9ad9bfdc pari_alpha: use perl to generate function descriptions 2016-10-26 11:06:40 +02:00
Michael Raskin 5af1b7ad02 singular: 3-1-2 -> 3-1-7 2016-10-26 11:06:39 +02:00
Michael Raskin 93bea1ecb0 R: 3.2.3 -> 3.2.4 2016-10-26 11:06:37 +02:00
Michael Raskin 5f418b75d6 nauty: init at 26r7 2016-10-26 11:06:36 +02:00
Michael Raskin a67a50895c gfan: init at 0.5 2016-10-26 11:06:36 +02:00
Michael Raskin 71f659d86d pari_alpha: init at 2.8.0.alpha: planning to use for Sage 2016-10-26 11:06:34 +02:00
Michael Raskin 411d5742ca symmetrica: init at 2.0 2016-10-26 11:06:33 +02:00
Michael Raskin c450d7b0a8 ratpoints: init at 2.1.3 2016-10-26 11:06:33 +02:00
Frederik Rietdijk e56832d730 Merge remote-tracking branch 'upstream/master' into HEAD 2016-10-22 17:23:24 +02:00
Vladimír Čunát 4328629bf8 treewide: fix meta evaluation 
There is no `stdenv.maintainers`. /cc @veprbl.
 2016-10-22 12:05:23 +02:00
Jörg Thalheim 9c0b5e4b22 Merge pull request #19666 from veprbl/hep_for_upstream 
Add fastjet, hepmc, yoda, rivet, lhapdf, herwig, pythia, sacrifice, nlojet++
 2016-10-21 21:58:45 +02:00
Dmitry Kalinkin ef96b48659
root: s/python/python2/ 2016-10-21 15:47:38 -04:00
Dmitry Kalinkin 59a8aff8e6
root: add veprbl to maintainers 2016-10-21 13:30:30 -04:00
Dmitry Kalinkin b4e3e7b752
add veprbl to maintainers 2016-10-21 13:29:57 -04:00
= d6880b210c
yarp: 2.3.65 -> 2.3.66.1 2016-10-20 19:34:03 +02:00
Dmitry Kalinkin 3324d8dc72
sacrifice: init at 1.0.0 2016-10-19 02:17:16 -04:00
Frederik Rietdijk 8963dae343 z3: use python2 2016-10-18 23:16:07 +02:00
Shea Levy eca0f17ad2 nix-buffer support improvements. 
Use inherit-local, add per-package elisp hooks.
 2016-10-07 10:31:37 -04:00
Kirill Boltaev 3e646865f4 treewide: use ocaml.version (#19192) 2016-10-05 09:32:30 +02:00
Aneesh Agrawal fcee1d0b28
Remove redundant -DCMAKE_BUILD_TYPE=Release flags 
Since commit 183d05a0 in 2012, this is the default.

fixes #18000
 2016-10-01 16:13:41 +02:00
Brian McKenna 57e1250d89 redprl: remove explicit builder 
patchPhase wasn't being called for me so I've switched out the explicit
builder for the generic form. I can now build RedPRL on locally on
NixOS.
 2016-09-29 10:52:29 +10:00
Anthony Cowley a523351314 redprl: patch install script shebangs 2016-09-27 18:24:06 -04:00
Joachim F 19d3b1aa5f Merge pull request #19004 from nico202/fix-gazebo-cmake 
gazebo7: Fix gazebo-config.cmake output file
 2016-09-27 16:32:32 +02:00
= efb56cec43
gazebo7: Fix gazebo-config.cmake output file 2016-09-27 10:30:27 +02:00
Kirill Boltaev 2bc87d48f1 scilab: mark as broken 2016-09-26 02:36:49 +03:00
Kirill Boltaev 06ecea00e5 glsurf: mark as broken 2016-09-26 02:36:49 +03:00
Kirill Boltaev e61663a233 treewide: move to ocaml-ng system 2016-09-26 02:36:49 +03:00
Anthony Cowley a3c26fec32 redprl: init at 2016-09-22 2016-09-23 20:37:20 -04:00
Vincent Laporte c78c2b98c4 ecm: set meta.platforms to linux only 2016-09-21 19:14:11 +02:00
Gabriel Ebner dd4a015aa8 eprover: 1.9 -> 1.9.1 2016-09-20 11:57:14 -04:00
Joachim F e22dd2f6c5 Merge pull request #18740 from chris-martin/tulip-4-9 
Tulip: 4.1.0 -> 4.9.0
 2016-09-20 14:34:17 +02:00
Ram Kromberg a729d6ee55 calc: remove redundant groff dependency 2016-09-19 01:37:45 +03:00
Chris Martin 08e5949235 tulip: 4.1.0 -> 4.9.0 2016-09-18 15:24:29 -04:00
Dmitry Kalinkin 7b9deaba81 root: add setup-hook 2016-09-18 04:45:18 -04:00
Nikolay Amiantov 4748709926 Merge commit 'refs/pull/18498/head' of git://github.com/NixOS/nixpkgs 2016-09-13 12:51:34 +03:00
Franz Pletz fb9117efa6 Merge pull request #18488 from chris-martin/md5-2 
Miscellaneous packages: Use sha256 instead of md5 (part 2)
 2016-09-13 07:11:43 +02:00
Kirill Boltaev bccd75094f treewide: explicitly specify gtk and related package versions 2016-09-12 18:26:06 +03:00
Dmitry Kalinkin 5646c2aba6 root: add support for x86_64-darwin 
1) add pcre dependency (for some reason builtin_pcre doesn't work)
2) Disable dependencies that are currently not supported by the
expression.  Most users should not need those. These are disabled to
prevent cmake from picking them up from system and causing impurities.
Once there is a user who needs these they will have to update the
expression.
3) disable some OSX detection code that relies on /usr/bin/sw_vers
that chooses c++ library, silences warnings and sets macosx-version-min.
macosx-version-min is already set by nix using MACOSX_DEPLOYMENT_TARGET
environment variable.
 2016-09-11 17:29:13 -04:00
Chris Martin e417a63e61 scilab: md5->sha256 2016-09-10 13:50:10 -04:00
Dan Peebles f285ce8fed twelf: fix emacs mode 2016-09-08 23:12:32 -04:00
Michael Raskin b924cdefa5 tptp: take into account upstream tarball hash change; one file got renamed and some statistics in the documentation got regenerated 2016-09-08 16:49:22 +02:00
obadz 2919375c91 minc_tools: don't run tests which have been failing since first pkged 2016-09-05 17:26:12 +01:00
Domen Kožar 9e363a752f openmodelica: enable parallel building 
(cherry picked from commit 261d51971a)
Signed-off-by: Domen Kožar <domen@dev.si>
 2016-09-05 18:06:28 +02:00
Joachim F 3d852770db Merge pull request #18164 from moyamo/geogebra 
geogebra: 5.0.265.0 -> 5.0.271.0
 2016-09-03 17:06:54 +02:00
Tuomas Tynkkynen 3364230d56 Disable bunch of non-compiling packages on Darwin 
These ones have a "Last successful build" timestamp in the 2014s or
2015s. Presumably no one will notice if we now stop building them.

softether_4_18              2015-09-20  http://hydra.nixos.org/build/39418483
lensfun                     2014-09-30  http://hydra.nixos.org/build/39394104
net_snmp                    2015-09-20  http://hydra.nixos.org/build/39410553
djview                      2015-08-11  http://hydra.nixos.org/build/39413233
libmusicbrainz2             2015-09-20  http://hydra.nixos.org/build/39410106
fox_1_6                     2014-05-07  http://hydra.nixos.org/build/39410858
libofx                      2015-09-24  http://hydra.nixos.org/build/39423507
yacas                       2014-09-30  http://hydra.nixos.org/build/39393150
iomelt                      2014-09-30  http://hydra.nixos.org/build/39408486
softether                   2015-09-20  http://hydra.nixos.org/build/39425800
mp4v2                       2014-09-30  http://hydra.nixos.org/build/39421899
virtuoso7                   2014-09-21  http://hydra.nixos.org/build/39415206
man_db                      2015-04-23  http://hydra.nixos.org/build/39404236
libdiscid                   2014-09-30  http://hydra.nixos.org/build/39412202
zabbix22.agent              2014-09-21  http://hydra.nixos.org/build/39412149
vidalia                     2015-08-06  http://hydra.nixos.org/build/39411500
libmtp                      2015-09-20  http://hydra.nixos.org/build/39419199
wxGTK29                     2015-09-20  http://hydra.nixos.org/build/39415296
ncmpcpp                     2015-11-06  http://hydra.nixos.org/build/39404455
libtorrent                  2014-09-21  http://hydra.nixos.org/build/39394646
shishi                      2014-03-21  http://hydra.nixos.org/build/39418874
ocaml_3_12_1                2014-09-30  http://hydra.nixos.org/build/39392996
djview4                     2015-08-11  http://hydra.nixos.org/build/39427799
vimNox                      2014-05-23  http://hydra.nixos.org/build/39397012
ttfautohint                 2015-08-06  http://hydra.nixos.org/build/39398330
libraw                      2015-09-24  http://hydra.nixos.org/build/39402271
wxGTK30                     2015-09-20  http://hydra.nixos.org/build/39401871
sbcl_1_2_5                  2015-09-20  http://hydra.nixos.org/build/39426091
prover9                     2014-09-30  http://hydra.nixos.org/build/39406476
rcs                         2015-08-25  http://hydra.nixos.org/build/39392037
gpac                        2015-09-24  http://hydra.nixos.org/build/39399470
virtuoso6                   2014-09-30  http://hydra.nixos.org/build/39398651
xlslib                      2015-09-24  http://hydra.nixos.org/build/39410387
ucommon                     2015-03-27  http://hydra.nixos.org/build/39414040
commoncpp2                  2014-09-30  http://hydra.nixos.org/build/39420117
virtuoso                    2014-09-21  http://hydra.nixos.org/build/39399978
miniHttpd                   2014-09-30  http://hydra.nixos.org/build/39392925
mpack                       2014-09-26  http://hydra.nixos.org/build/39399535
nbd                         2014-09-26  http://hydra.nixos.org/build/39401367
newsbeuter-dev              2014-07-29  http://hydra.nixos.org/build/39406259
gimp_2_8                    2015-09-20  http://hydra.nixos.org/build/39436271
gimp                        2015-09-20  http://hydra.nixos.org/build/39435976
zabbix20.agent              2014-09-30  http://hydra.nixos.org/build/39393242
gst_all_1.gst-plugins-good  2015-09-20  http://hydra.nixos.org/build/39408506
ocaml_4_00_1                2014-09-30  http://hydra.nixos.org/build/39399526
inadyn                      2014-09-30  http://hydra.nixos.org/build/39426389
gst_all_1.gst-plugins-bad   2015-09-20  http://hydra.nixos.org/build/39392970
zabbix.agent                2014-09-30  http://hydra.nixos.org/build/39421412
cmake-2_8                   2015-09-24  http://hydra.nixos.org/build/39399443
liblastfm                   2015-08-06  http://hydra.nixos.org/build/39421812
newsbeuter                  2014-07-29  http://hydra.nixos.org/build/39396605
sdcv                        2014-09-26  http://hydra.nixos.org/build/39412928
 2016-09-01 20:39:33 +03:00
Adrien Devresse 28d2d78b55 neuron: fix issue with incorrectly prefixed python path 2016-09-01 13:41:26 +02:00
Tuomas Tynkkynen 8c4aeb1780 Merge staging into master 
Brings in:
    - changed output order for multiple outputs:
      https://github.com/NixOS/nixpkgs/pull/14766
    - audit disabled by default
      https://github.com/NixOS/nixpkgs/pull/17916

 Conflicts:
	pkgs/development/libraries/openldap/default.nix
 2016-09-01 13:27:27 +03:00
Frederik Rietdijk 684f08166c fixup 2016-09-01 12:03:10 +02:00
Adrien Devresse ae2800378f neuron: fix issue #17914 -> Add python bindings to neuron derivation and minor fixes 
- Add support for python bindings
- make neuron respect standard pythonpath prefix
- force exec_prefix == prefix to respect standard nix file hierarchy
- normalize indentation
- propagate dependencies necessary for nrniv_makefile usage
- Add support for darwin
 2016-09-01 12:03:10 +02:00
Mohammed Yaseen Mowzer 921682a4d5 geogebra: 5.0.265.0 -> 5.0.271.0 2016-08-31 18:31:56 +02:00
Tuomas Tynkkynen b87a2245b1 root: Fix libc dev reference 2016-08-31 12:54:28 +03:00
Tuomas Tynkkynen d3dc3d4130 Merge remote-tracking branch 'dezgeg/shuffle-outputs' into staging 
https://github.com/NixOS/nixpkgs/pull/14766
 2016-08-30 12:43:37 +03:00
Tuomas Tynkkynen aef35c52f0 treewide: Fix output references to libX11 2016-08-30 03:40:23 +03:00
Tuomas Tynkkynen c3bcb4e1ce treewide: Use explicit 'dev' references to glibc 2016-08-30 03:11:09 +03:00
Vincent Laporte 17af87323d maxima: 5.36.1 -> 5.38.1 2016-08-29 15:52:05 +02:00
Robin Gloster 005a147f92
sage: fix build 
closes #17842
 2016-08-29 12:46:51 +00:00
obadz 57ddc155fc Merge branch 'master' into staging 
Conflicts:
	pkgs/games/scummvm/default.nix
 2016-08-28 12:20:59 +01:00
Gabriel Ebner 497b3cabcc libqalculate, qalculate-gtk: 0.9.8 -> 0.9.9 2016-08-28 10:40:33 +02:00
obadz 3de6e5be50 Merge branch 'master' into staging 
Conflicts:
      pkgs/applications/misc/navit/default.nix
      pkgs/applications/networking/mailreaders/alpine/default.nix
      pkgs/applications/networking/mailreaders/realpine/default.nix
      pkgs/development/compilers/ghc/head.nix
      pkgs/development/libraries/openssl/default.nix
      pkgs/games/liquidwar/default.nix
      pkgs/games/spring/springlobby.nix
      pkgs/os-specific/linux/kernel/perf.nix
      pkgs/servers/sip/freeswitch/default.nix
      pkgs/tools/archivers/cromfs/default.nix
      pkgs/tools/graphics/plotutils/default.nix
 2016-08-27 23:54:54 +01:00
Nikolay Amiantov 1db4cb750c gravit: fix build 2016-08-28 01:04:18 +03:00
Robin Gloster 9f80e55428
openmodelica: disable format hardening 2016-08-27 21:54:17 +00:00
Robin Gloster 191896e63a
qfsm: disable format hardening 2016-08-27 21:53:49 +00:00
Robin Gloster eddc0a5549
treewide: fix darwin builds by using getOutput 
This fixes eval for pkgs referring to optional static output
 2016-08-25 08:44:20 +00:00
Franz Pletz df275f5b85 treewide: fix darwin builds by referring to stdenv's libc 2016-08-25 02:56:25 +02:00
Robin Gloster f00c750014 qgroundcontrol: remove unused overrideCC and comment 2016-08-24 22:41:41 +00:00
Robin Gloster 13d7e83bf1 perseus: use default gcc 2016-08-24 22:41:41 +00:00
Robin Gloster bd44c7fd70 boolector: fix build with multiple outputs 2016-08-24 18:19:40 +00:00
obadz 0e8d2725dc Merge branch 'master' into staging 2016-08-23 18:50:06 +01:00
Tuomas Tynkkynen 282277dbc8 treewide: Use more makeBinPath 2016-08-23 01:18:10 +03:00
obadz 24a9183f90 Merge branch 'hardened-stdenv' into staging 
Closes #12895

Amazing work by @globin & @fpletz getting hardened compiler flags by
enabled default on the whole package set
 2016-08-22 01:19:35 +01:00
Michael Raskin 14736fcf4c openmodelica: fix libgfortran.so search 2016-08-20 21:52:21 +02:00
Austin Seipp cc7b072157 nixpkgs: abc-verifier 20160813 -> 20160818 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-08-19 01:55:13 +00:00
Robin Gloster 99cb230b47 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-14 09:09:20 +00:00
Austin Seipp 97e5b88d06 nixpkgs: abc-verifier 20150614 -> 20160813 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-08-13 17:48:42 +00:00
Franz Pletz bd4490e277 Merge branch 'master' into hardened-stdenv 2016-08-13 16:59:55 +02:00
Luca Bruno 27f294f38d Merge pull request #17589 from cmfwyp/sagemath 
sagemath: update mirrors, fix TeX Live dependency
 2016-08-12 21:58:41 +01:00
Robin Gloster b7787d932e Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-12 09:46:53 +00:00
Robin Gloster 40d217b90e Merge pull request #17657 from matthewbauer/darwin-misc 
Darwin misc. fixes
 2016-08-11 16:41:34 +00:00
Michael Raskin d1951974df golly: 2.7 -> 2.8 2016-08-11 17:57:35 +02:00
Michael Raskin da4b7afea8 pari: 2.7.5 -> 2.7.6 2016-08-11 17:57:35 +02:00
Matthew Bauer 96322f6926 bcftools: fix darwin building 
gcc not available
 2016-08-10 22:48:19 -05:00
Matthew Bauer ee63056476 aspino: patch to use c++ instead of g++ 2016-08-10 22:29:18 -05:00
Matthew Bauer b3cb07e130 lie: only build on linux 
Darwin build fails from conflicts in libSystem:

In file included from altdom.c:1:
In file included from /private/var/folders/7t/4vz31njj37b8y_bg6z3t7tk00000gn/T/nix-build-LiE-2.2.2.drv-0/LiE/lie.h:34:
In file included from /nix/store/9ll4m9yx854hr64fn1w9ra3qimm3pzdk-Libsystem-osx-10.9.5/include/string.h:176:
/nix/store/9ll4m9yx854hr64fn1w9ra3qimm3pzdk-Libsystem-osx-10.9.5/include/strings.h:73:7: error: redefinition of 'index' as different kind of symbol
char    *index(const char *, int) __POSIX_C_DEPRECATED(200112L);
         ^
/private/var/folders/7t/4vz31njj37b8y_bg6z3t7tk00000gn/T/nix-build-LiE-2.2.2.drv-0/LiE/lie.h:6:14: note: previous definition is here
typedef long index;
             ^
1 error generated.
 2016-08-10 21:06:22 -05:00
Matthew Bauer d4b1289592 lie: LiE -> lie 
Attributes need to be lowercase, see https://nixos.org/nixpkgs/manual/#sec-package-naming.
 2016-08-10 21:04:16 -05:00
obadz 8df7571bbc geogebra: don't build on hydra since derivation just unpacks jars 2016-08-10 14:35:14 +01:00
Mohammed Yaseen Mowzer 04f0cb86d0 geogebra: init at 5.0.265.0 
Closes #17400
 2016-08-10 14:32:09 +01:00
cmfwyp 179d992427
sage: fix TeX Live input 
The Sage derivation had texLive, the old TeX Live packaging which
is now marked as broken, as a build input. This replaces it by the
current TeX Live packaging.

However, the build remains broken. One of the problems can be
solved by patching the hashbangs at the beginning of build scripts,
but the build still gets stuck while building ncurses.
 2016-08-07 23:18:47 -04:00
Tuomas Tynkkynen fdde95e096 msieve: Broken on i686 
http://hydra.nixos.org/build/38236222
 2016-08-06 17:06:45 +03:00
Tuomas Tynkkynen f87f37c1ee bwa: Broken on i686 
http://hydra.nixos.org/build/38236956
 2016-08-06 17:06:45 +03:00
Erik Rybakken 37aff96daf ripser: init at 1.0 (#17481) 2016-08-04 10:21:48 +02:00
Robin Gloster 1b979d8384 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-03 13:34:44 +00:00
Tuomas Tynkkynen 21f17d69f6 treewide: Add lots of meta.platforms 
Build-tested on x86_64 Linux & Mac.
 2016-08-02 21:42:43 +03:00
Tuomas Tynkkynen 102ffa6be7 treewide: Wrap some really long package descriptions 2016-08-02 21:17:44 +03:00
Tuomas Tynkkynen 59ce911810 treewide: Some EOF-whitespace fixes 2016-08-02 21:17:44 +03:00
Tuomas Tynkkynen 1bf5ded193 treewide: Lots of meta.hydraPlatforms -> meta.platforms 
In all of these files, there is no meta.platforms but only
meta.hydraPlatforms, which doesn't seem to have any purpose except being
inconsistent.
 2016-08-02 21:17:44 +03:00
Robin Gloster 63c7b4f9a7 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-31 20:51:34 +00:00
Robert Helgesson 8878e8ec05 leo2: remove use of builderDefsPackage (#17398) 2016-07-31 13:57:29 +02:00
Ram Kromberg 78d82f33ac alliance: 5.0 -> 5.1.1 (#17353) 2016-07-30 15:35:51 +01:00
Dmitry Kalinkin 4449ecb617 root: 6.04.16 -> 6.04.18 (#17265) 
root: compile against external gsl

Revert "Revert "root: enable parallel building""

This reverts commit ee1a10ee6b.

ROOT has no problems with parallel build. The problems that caused the
original commit were not related to parallel building.
 2016-07-30 01:41:37 +01:00
Robin Gloster 154af9e67d Merge pull request #9499 from khumba/scilab-bin-5 
scilab-bin: init at 5.5.2
 2016-07-28 16:43:08 +02:00
Marco Maggesi c28eb6c2ba Update HOL Light to version 2016-07-23. 2016-07-28 15:56:20 +02:00
Bryan Gardiner ed071594e5
scilab-bin: init at 5.5.2 
A built-from-source Scilab 5 package looks to be a lot more work, and some
dependencies are missing from Nixpkgs, but the binary version with bundled
dependencies works.
 2016-07-27 21:30:12 -07:00
Gabriel Ebner f970bc67c7 lean: 20160117 -> 2016-07-05 
Fixes #17260.
 2016-07-27 11:01:45 +02:00
Robin Gloster f222d98746 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-25 12:47:13 +00:00
Gabriel Ebner 9082476478 cvc4: 1.4 -> 1.5pre-smtcomp2016 2016-07-24 13:11:17 +02:00
Robert Helgesson 1012508356 stellarium: 0.14.2 -> 0.14.3 2016-07-22 23:13:35 +02:00
Robert Helgesson 1bedecb4f9 stellarium: wrap binary using wrapQtProgram 
Fixes #13582 where Stellarium segfaults when starting.
 2016-07-22 22:21:17 +02:00
Gabriel Ebner 82f087944b metis-prover: 2.3.20160102 -> 2.3.20160713 2016-07-21 18:41:26 +02:00
Robin Gloster 203846b9de Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-19 10:37:02 +00:00
Gabriel Ebner 530a9ab981 Merge remote-tracking branch 'vbgl/why3-0.87.1' 2016-07-18 13:33:50 +02:00
Ben Darwin a896233396 jags: 3.4.0 -> 4.1.0 (#16804) 
* jags: 3.4.0 -> 4.1.0
* unbreak rjags and dependent packages
 2016-07-18 13:11:18 +02:00
vbgl d7cfdc581c coq: 8.5pl1 -> 8.5pl2 (#16863) 2016-07-18 11:33:51 +02:00
Nikolay Amiantov aefd8c420c Merge pull request #17043 from womfoo/fix/qmake4Hook-builds 
reintroduce qmake .pro files after qmake4Hook changes
 2016-07-18 00:11:24 +04:00
Kranium Gikos Mendoza dd778f1756 fritzing: fix qmake4Hook build 
pass phoenix.pro and return unpack logic which were removed in 0b88755
 2016-07-17 22:40:27 +08:00
Joachim F d9701350f9 Merge pull request #16951 from heilkn/lie 
LiE: include forgotten file INFO.a by installation
 2016-07-16 19:54:23 +02:00
Michael Raskin 61a3610853 tptp: 6.3.0 -> 6.4.0 2016-07-16 11:34:32 +02:00
Konstantin Heil c0656fe0c1 LiE: include forgotten file INFO.a by installation 2016-07-14 14:18:57 +02:00
Franz Pletz 26dd9acba5 Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-07-09 13:21:28 +02:00
Konstantin Heil b92c429799 LiE: init at 2.2.2 2016-06-30 21:04:41 +02:00
Vladimír Čunát 3afa246038 Merge branch 'staging' 
This includes a security update of expat.
 2016-06-29 07:47:04 +02:00
Austin Seipp 25bf4a5634 cryptoverif: init at 1.22 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-06-28 04:37:29 +00:00
Austin Seipp a69799c740 statverif: init at 1.86pl4 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-06-28 04:36:11 +00:00
Austin Seipp be19637b2a proverif: init at 1.94 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2016-06-28 04:36:11 +00:00
Ta'iř sj Ořit 3832ebde8b gephi: init at 0.9.1 (#16071) 2016-06-26 22:40:00 +02:00
mimadrid 5c7a75412e
igv: init at 2.3.77 2016-06-26 19:27:56 +02:00
Joachim Fasting 46b07b335b Merge pull request #16379 from mimadrid/init/bcftools-1.3.1 
bcftools: init at 1.3.1
 2016-06-24 22:15:51 +02:00
mimadrid d91d245f16
bcftools: init at 1.3.1 2016-06-24 21:08:17 +02:00
mimadrid 14feec44e4
samtools: refactoring 2016-06-24 21:08:17 +02:00
Vladimír Čunát 6b27ceb006 Merge 'master' into staging and re-revert merge 
... from staging to master, reverted temporarily in aa9a04883e.
 2016-06-23 12:09:03 +02:00
Vladimír Čunát aa9a04883e Revert "Merge branch 'staging'" due to glibc 
The main output started to retain dependency on bootstrap-tools; see
https://github.com/NixOS/nixpkgs/pull/15867#issuecomment-227949096

This reverts commit c05d829598, reversing
changes made to f073df60d6.
 2016-06-23 09:25:10 +02:00
Vladimír Čunát c05d829598 Merge branch 'staging' 2016-06-22 10:49:56 +02:00
Gabriel Ebner 0a8e613cea aspino: init at 2016-01-31 2016-06-21 13:55:28 +02:00
Gabriel Ebner 8f84a5cb08 glucose, glucose-syrup: init at 4.0 2016-06-21 13:26:51 +02:00
Gabriel Ebner 9c5588e99f spass: 3.7 -> 3.9 2016-06-21 08:18:20 +02:00
Michael Raskin ca495a53a5 tptp: fix hash 2016-06-20 18:38:08 +02:00
Bjørn Forsman bd01fad0ed Captialize meta.description of all packages 
In line with the Nixpkgs manual.

A mechanical change, done with this command:

  find pkgs -name "*.nix" | \
      while read f; do \
          sed -e 's/description\s*=\s*"\([a-z]\)/description = "\u\1/' -i "$f"; \
      done

I manually skipped some:

* Descriptions starting with an abbreviation, a user name or package name
* Frequently generated expressions (haskell-packages.nix)
 2016-06-20 13:55:52 +02:00
Gabriel Ebner 727716cd82 speedcrunch: 0.11-alpha -> 0.11 2016-06-19 18:45:04 +02:00
Gabriel Ebner e5b3b685f4 libqalculate, qalculate-gtk: 0.9.7 -> 0.9.8 2016-06-19 17:33:45 +02:00
Gabriel Ebner cc0b3bbcc2 minisat: support clang 2016-06-19 15:19:25 +02:00
Vladimír Čunát e757404555 Merge branch 'master' into staging 
Hydra nixpkgs: ?compare=1279790
 2016-06-19 12:33:04 +02:00
Vladimír Čunát 97c484a10f treewide: fix #include errors after gcc-5.4 
They were mostly missing <cmath> or <math.h>.
 2016-06-19 10:18:30 +02:00
mimadrid aa8eba9d95
weka: 3.6.12 -> 3.8.0 
Closes #16055
 2016-06-16 15:47:48 +02:00
mimadrid 9b7a53d9cb
cytoscape: init at 3.4.0 
Closes #16197
 2016-06-16 15:47:21 +02:00
Robin Gloster 8031cba2ab Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-06-10 09:27:04 +00:00
Christopher Lübbemeier ac4903284c gmsh: init at 2.12.0 2016-06-09 18:54:26 +02:00
Vincent Laporte a577b3666e why3: 0.87.0 -> 0.87.1 2016-06-09 09:51:38 +02:00
Luis Pedro Coelho bd617cb185 init bwa at 0.7.15 
Closes #16064
 2016-06-08 17:25:20 +01:00
Tuomas Tynkkynen f1d83444a5 openmodelica: Use makeLibraryPath 2016-06-07 21:18:02 +03:00
Joachim Fasting e65698db0b Merge pull request #15939 from ChrisJefferson/fix-gap 
gap : 4.4.12 -> 4.8.3
 2016-06-04 01:14:09 +02:00
Chris Jefferson 75f793bbb2 gap : 4.4.12 -> 4.8.3 2016-06-03 19:01:12 +01:00
Tuomas Tynkkynen bac26e08db Fix lots of fetchgit hashes (fallout from #15469) 2016-06-03 17:17:08 +03:00
Robin Gloster 2d382f3d98 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-05-30 19:39:34 +00:00
Nikolay Amiantov 51f479465c qgroundcontrol: fix build 2016-05-29 19:51:22 +03:00
Moritz Ulrich 7b2fab05f3 Merge pull request #15606 from dvc94ch/fpga-toolchain-updates 
FPGA toolchain updates
 2016-05-28 15:41:10 +02:00
Vladimír Čunát e4832c7541 Merge branch 'staging' 
Includes a security update of libxml2.
 2016-05-27 15:58:40 +02:00
Vladimír Čunát 81039713fa Merge branch 'master' into staging 
... to get the systemd update (rebuilding ~7k jobs).
 2016-05-26 16:50:22 +02:00
Vladimír Čunát ee1a10ee6b Revert "root: enable parallel building" 
This reverts commit 2991fdca52.
Hydra builds often report missing various files.
 2016-05-26 16:27:59 +02:00
Tobias Geerinckx-Rice dce1edf946
samtools: 1.3 -> 1.3.1 2016-05-25 02:06:47 +02:00
Nicolò Balzarotti c1c0c99af3 yarp: 2.3.64 -> 2.3.65 (#15662) 2016-05-24 13:30:52 +02:00
David Craven 509ce20ded verilog: 0.97 -> 2016.05.21 2016-05-22 07:38:57 +02:00
David Craven ce3d510d90 verilator: 3.874 -> 3.884 2016-05-22 07:38:57 +02:00
Tuomas Tynkkynen 8d473f107c treewide: Make explicit that 'dev' output of readline is used 2016-05-19 10:03:35 +02:00
Tuomas Tynkkynen 47c45e2041 treewide: Make explicit that 'dev' output of gmp is used 2016-05-19 10:00:36 +02:00
Tuomas Tynkkynen 85a51074dc treewide: Make explicit that 'dev' output of atk is used 2016-05-19 10:00:25 +02:00
Franz Pletz f8d481754c
Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-05-18 17:10:02 +02:00