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85688 commits

Author SHA1 Message Date
Graham Christensen 428927ffa6
openjpeg2: patch for multiple CVEs 
-  Floating Point Exception (aka FPE or divide by zero) in
    opj_pi_next_cprl function in openjp2/pi.c:523 in OpenJPEG
    2.1.2. (CVE-2016-9112)

 -  There is a NULL Pointer Access in function imagetopnm of
    convert.c:1943(jp2) of OpenJPEG 2.1.2. image->comps[compno].data is
    not assigned a value after initialization(NULL). Impact is Denial of
    Service. (CVE-2016-9114)

 -  NULL Pointer Access in function imagetopnm of convert.c:2226(jp2) in
    OpenJPEG 2.1.2. Impact is Denial of Service. Someone must open a
    crafted j2k file. (CVE-2016-9116)

 -  Heap Buffer Overflow (WRITE of size 4) in function pnmtoimage of
    convert.c:1719 in OpenJPEG 2.1.2. (CVE-2016-9118)
 2017-01-07 06:51:31 -05:00
Peter Simons c5f8c7fe36 Merge pull request #21722 from mimadrid/fix/r-modules 
Fix a lot of rPackages
 2017-01-07 12:19:42 +01:00
Franz Pletz db8b044651 Merge pull request #21685 from mayflower/fix/bind-outputs 
bind: fix collision of binaries in outputs
 2017-01-07 11:37:17 +01:00
Frederik Rietdijk c0c97c5793 Merge pull request #21729 from Ralith/matrix-synapse 
matrix-synapse: 0.18.6-rc3 -> 0.18.7-rc2
 2017-01-07 09:02:30 +01:00
Joachim F f1dc2dd552 Merge pull request #21694 from dtzWill/fix/skype-pax 
skype: paxmark to fix execution on PaX-enabled kernels
 2017-01-07 08:05:02 +01:00
Joachim Fasting 0f24e56728
dnscrypt-proxy: 1.9.0 -> 1.9.1 2017-01-07 08:02:53 +01:00
Joachim Fasting d6ff445f10
grsecurity: 4.8.15-201612301949 -> 4.8.16-201701062021 2017-01-07 08:01:41 +01:00
Benjamin Saunders 7027bbfba3 matrix-synapse: 0.18.6-rc3 -> 0.18.7-rc2 2017-01-06 20:41:29 -08:00
Shea Levy 845dd121f8 ghc-head: Put ./boot into commonPreConfigure 2017-01-06 22:10:29 -05:00
Shea Levy c5c7911ac2 libuv: disable getaddrinfo tests. 
Seem to require network access, at least on darwin
 2017-01-06 21:09:49 -05:00
Franz Pletz e6708cea37
bind: fix collision of binaries in outputs 
Using outputsToInstall the intended behaviour of including host and dnsutils
when bind is installed can be implemented instead of using symlinks to fix
installing all outputs individually with nix-env.

Fixes #19761.
 2017-01-07 02:44:54 +01:00
Daiderd Jordan 56cceca999 Merge pull request #21700 from polyrod/master 
sakura: fixed GLib-GIO-ERROR #21698
 2017-01-07 01:40:00 +01:00
Franz Pletz 887e703d42 Merge pull request #21640 from mguentner/cpp_ipfs_api_update 
cpp-ipfs-api: 2016-11-09 -> 2017-01-04
 2017-01-07 00:44:01 +01:00
Thomas Tuegel 7215118c1b Merge pull request #21704 from gnidorah/master 
kde-gtk-config: follow symlinks for cursors
 2017-01-06 16:51:27 -06:00
Tim Steinbach c1d20ea50c
kernel: 4.9.0 -> 4.9.1 2017-01-06 16:15:18 -05:00
Tim Steinbach ecf87b11f2
kernel: 4.8.15 -> 4.8.16 2017-01-06 16:15:02 -05:00
Tim Steinbach 8fda707027
kernel: 4.4.39 -> 4.4.40 2017-01-06 16:14:30 -05:00
Thomas Tuegel 8633dab72a Merge pull request #21650 from dbalan/ldns-1.7.0 
ldns 1.6.17 -> 1.7.0
 2017-01-06 14:46:18 -06:00
Vladimír Čunát 1e253d54f5
libpng12: security 1.2.56 -> 1.2.57 
CVE-2016-10087
 2017-01-06 21:15:46 +01:00
mimadrid 8954412fcc
r-modules: fix snpStats package 2017-01-06 21:07:25 +01:00
mimadrid b5a0925663
r-modules: fix VariantAnnotation package 2017-01-06 21:07:25 +01:00
mimadrid 6540b6507d
r-modules: fix rtracklayer package 2017-01-06 21:07:25 +01:00
mimadrid baf65d5000
r-modules: fix Rsubread package 2017-01-06 21:07:25 +01:00
mimadrid 9ebab25442
r-modules: fix gmapR package 2017-01-06 21:07:25 +01:00
mimadrid 286e86f3a5
r-modules: fix oligo package 2017-01-06 21:07:25 +01:00
mimadrid afd1a4c933
r-modules: fix affyio package 2017-01-06 21:07:25 +01:00
mimadrid 4c0c3c7493
r-modules: fix BitSeq package 2017-01-06 21:07:24 +01:00
mimadrid 272b447ea7
r-modules: fix bamsignals package 2017-01-06 21:07:24 +01:00
mimadrid c5e4754ca7
r-modules: fix affyPLM package 2017-01-06 21:07:24 +01:00
mimadrid 1d7fd8f3c4
r-modules: fix xml2 package 2017-01-06 21:07:24 +01:00
mimadrid 5b813c2ab0
r-modules: fix XBRL package 2017-01-06 21:07:24 +01:00
mimadrid 512be9e14a
r-modules: fix WhopGenome package 2017-01-06 21:07:24 +01:00
mimadrid f9d84f8b65
r-modules: fix tkrplot package 2017-01-06 21:07:24 +01:00
mimadrid 0b3e62bb12
r-modules: fix tiff package 2017-01-06 21:07:23 +01:00
mimadrid 9420fa23c6
r-modules: fix TAQMNGR package 2017-01-06 21:07:23 +01:00
mimadrid 2303e63116
r-modules: fix spate package 2017-01-06 21:07:23 +01:00
mimadrid fcbed4b654
r-modules: fix showtext package 2017-01-06 21:07:23 +01:00
mimadrid 8a6b58d51d
r-modules: fix seqminer package 2017-01-06 21:07:23 +01:00
mimadrid e1a5eeef06
r-modules: fix seqinr package 2017-01-06 21:07:22 +01:00
mimadrid 1ef67b9e78
r-modules: fix RVowpalWabbit package 2017-01-06 21:05:54 +01:00
mimadrid ae2723a144
r-modules: fix rtiff package 2017-01-06 21:05:54 +01:00
mimadrid d7ac90dd0c
r-modules: fix rtfbs package 2017-01-06 21:05:53 +01:00
mimadrid fd175e4084
r-modules: fix Rssa package 2017-01-06 21:05:52 +01:00
mimadrid bd2aaada6e
r-modules: fix RSclient package 2017-01-06 21:05:52 +01:00
mimadrid 53235dbe14
r-modules: fix rphast package 2017-01-06 21:05:52 +01:00
mimadrid 780fb79e32
r-modules: fix Rmpfr package 2017-01-06 21:05:51 +01:00
mimadrid a58db75ccb
r-modules: fix rmatio package 2017-01-06 21:05:51 +01:00
mimadrid 674a2077dd
r-modules: fix rJava package 2017-01-06 21:05:51 +01:00
mimadrid 13a582688f
r-modules: fix RJaCGH package 2017-01-06 21:05:51 +01:00
mimadrid 9922867fa8
r-modules: fix Rhtslib package 2017-01-06 21:05:50 +01:00