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4133 commits

Author SHA1 Message Date
John Ericson 4eb13669a0 ott: Don't also install emacs mode 
There is now a separate package for that.
 2021-01-05 14:41:52 -05:00
Anderson Torres 0972bbc12d
Merge pull request #108445 from AndersonTorres/updates 
Misc updates
 2021-01-05 11:54:15 -03:00
AndersonTorres e8183d4687 magic-vlsi: 8.3.80 -> 8.3.109 
Also, add myself to maintainers list.
 2021-01-05 10:49:00 -03:00
Sandro f53c431645
Merge pull request #108379 from SuperSandro2000/cleanups 2021-01-05 02:19:24 +01:00
Justin Bedo 56dd3fa172
varscan: 2.4.2 -> 2.4.4 2021-01-05 10:55:28 +11:00
Justin Bedo 62432c855f
last: 1145 -> 1170 2021-01-05 10:29:31 +11:00
Frederik Rietdijk b20838eb4a Merge staging-next into staging 2021-01-04 20:51:32 +01:00
Pavol Rusnak bf77245202
Merge pull request #108219 from prusnak/viennarna 
ViennaRNA: init at 2.4.17
 2021-01-04 18:04:56 +01:00
markuskowa d480c86858
Merge pull request #107223 from markuskowa/upd-qe 
quantum-espresso: 6.5 -> 6.6
 2021-01-04 14:33:37 +01:00
Sandro 6ac4c2d1f6
Merge pull request #107962 from flyfloh/colmap-36 2021-01-04 14:25:21 +01:00
Sandro Jäckel a8d360eca3
raxml: cleanup 2021-01-04 11:02:16 +01:00
github-actions[bot] 07165c7226
Merge staging-next into staging 2021-01-03 18:38:32 +00:00
John Ericson b03fdcc7f9
Merge pull request #108300 from siraben/parallel-cmake 
treewide: remove enableParallelBuilding = true if using cmake
 2021-01-03 13:22:09 -05:00
Pavol Rusnak 77364ac7c0
Merge pull request #108251 from prusnak/bowtie2 
bowtie2: 2.3.5.1 -> 2.4.2
 2021-01-03 13:47:45 +01:00
github-actions[bot] 0649757570
Merge staging-next into staging 2021-01-03 12:24:59 +00:00
Ben Siraphob 3ae5e6ce03 treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
Sandro 6ae069c990
Merge pull request #108249 from prusnak/bowtie 
bowtie: init at at 1.3.0
 2021-01-03 10:03:24 +01:00
zowoq fb2311d430 Merge staging-next into staging 2021-01-03 16:33:28 +10:00
Pavol Rusnak 9139eb5aee bowtie2: 2.3.5.1 -> 2.4.2 2021-01-02 22:18:32 +01:00
Pavol Rusnak 03b99f0721 bowtie: init at at 1.3.0 2021-01-02 19:46:59 +01:00
Maximilian Bosch 097cd34db0
Merge pull request #108126 from Ma27/cleanup-maintained-pkgs 
treewide: remove maintainership of `ma27` from a few packages
 2021-01-02 18:58:26 +01:00
Pavol Rusnak cb0b77e2f5 ViennaRNA: init at 2.4.17 2021-01-02 18:53:31 +01:00
Sandro 84c3e129cc
Merge pull request #108190 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.0.10 -> 4.0.11
 2021-01-02 09:55:16 +01:00
Ben Wolsieffer 92e3304792 qgroundcontrol: 4.0.10 -> 4.0.11 2021-01-01 22:22:20 -05:00
freezeboy 9fd99b5a32 opensmt: 20101017 -> 2.0.1 2021-01-01 23:38:04 +01:00
Sandro 0336dda91b
Merge pull request #108113 from r-ryantm/auto-update/nanovna-saver 
nanovna-saver: 0.3.7 -> 0.3.8
 2021-01-01 21:10:11 +01:00
Maximilian Bosch e7d1be840c
treewide: remove maintainership of ma27 from a few packages 
Those are packages I don't use anymore for a longer time and I therefore
don't think that listing me as maintainer is a good idea. If those
should be removed now, I'd be fine with that.

SuperSandro2000 will take care of a few packages[1].

[1] https://github.com/NixOS/nixpkgs/pull/108126#pullrequestreview-560599381
 2021-01-01 19:48:01 +01:00
github-actions[bot] 0eb369d907
Merge staging-next into staging 2021-01-01 18:39:12 +00:00
Dmitry Kalinkin 8bee208bf8
Merge pull request #107335 from veprbl/pr/root_6_20_08 
root: 6.18.04 -> 6.22.06, don't build vendored LLVM
 2021-01-01 12:28:37 -05:00
R. RyanTM 43a4341bf7 nanovna-saver: 0.3.7 -> 0.3.8 2021-01-01 10:47:03 +00:00
Ben Siraphob b04fc593e7 treewide: cmake buildInputs to nativeBuildInputs, minor cleanups 2021-01-01 11:52:33 +07:00
Florian Pester b740afa546 colmap: 3.5 -> 3.6 2020-12-31 09:56:07 +01:00
Florian Pester 75eef96f08 colmapWithCuda: fix build 2020-12-31 09:56:07 +01:00
Pavol Rusnak 1017eb06b1
Merge pull request #101227 from herberteuler/fix/mathematica-12.1.1-opencv4 
mathematica: use opencv4
 2020-12-29 23:41:09 +01:00
Doron Behar 7c304d037f
Merge pull request #104848 from hjones2199/kstars-up 
kstars: 3.4.3 -> 3.5.0
 2020-12-28 00:16:21 +02:00
Doron Behar 6f8710ae1e
Merge pull request #107545 from wucke13/mission-planner 
mission-planner: init at version 1.3.74
 2020-12-28 00:02:53 +02:00
Hunter Jones 7d42517d83 kstars: 3.4.3 -> 3.5.0 2020-12-27 14:00:39 -06:00
freezeboy 3c89e637e8 bcal: 1.9 -> 2.2 2020-12-27 17:52:28 +01:00
wucke13 54c2534c3b mission-planner: init at version 1.3.74 2020-12-26 21:39:02 +01:00
Markus Kowalewski 1ba79ed57f
openmolcas: set platform to x86-64-linux 
This is the main development platforms. Others are not
officially supported.
 2020-12-26 16:58:58 +01:00
Markus Kowalewski c3fadb95f4
openmolcas: fix fallout from #83888 
Removed non-functional lines.
Openmolcas does not build with the blas/lapack switching mechanism
 2020-12-26 01:55:46 +01:00
R. RyanTM 2c3ca45515 mavproxy: 1.8.29 -> 1.8.30 2020-12-24 08:35:40 -08:00
lsix 156b9cc570
Merge pull request #107482 from lsix/gama-2.12 
gama: 2.09 -> 2.12
 2020-12-24 08:22:07 +00:00
Matthias Beyer fd4a486dea gama: 2.09 -> 2.12 
Signed-off-by: Matthias Beyer <mail@beyermatthias.de>
 2020-12-23 16:58:32 +00:00
freezeboy 8db56b4525 kstars: add optional dependencies 2020-12-23 17:22:41 +01:00
freezeboy d63dc152e9 kstars: use mkDerivation instead of wrapQtAppsHook 2020-12-23 17:21:46 +01:00
Hunter Jones bc28967a18 phd2: add GApps wrapper to fix breakage on non-nixos wayland systems 2020-12-22 12:12:13 -06:00
Dmitry Kalinkin a30bff21e8
root: use llvm_5 from nixpkgs 2020-12-21 18:24:25 -05:00
Dmitry Kalinkin b7e70092c5
root: 6.20.08 -> 6.22.06 2020-12-21 16:43:09 -05:00
FliegendeWurst e49c1a0027
mathematica: 12.1.1 -> 12.2.0 (#107309) 2020-12-21 12:55:28 -05:00
Dmitry Kalinkin 7d6e0d5324
root: 6.18.04 -> 6.20.08 2020-12-20 23:49:54 -05:00
Justin Bedo 3a65e29d4b
SPAdes: add python dependency 2020-12-21 08:29:57 +11:00
Markus Kowalewski 7139a58f50
quantum-espresso: 6.5 -> 6.6 2020-12-19 21:14:40 +01:00
Timo Kaufmann afead527c4
Merge pull request #105615 from collares/sage-update 
sage: 8.9 -> 9.2
 2020-12-19 18:13:16 +01:00
Millian Poquet 15ab96d5a7 simgrid: 3.25 -> 3.26 2020-12-19 14:03:33 +01:00
Vincent Laporte 66c0fc3609 cryptoverif: 2.03pl1 → 2.04 2020-12-18 08:20:10 +01:00
Vincent Laporte b49a3fb852 cryptoverif: fix search for default library 2020-12-18 08:20:10 +01:00
Vincent Laporte c5556b7454 coq_8_12: 8.12.1 → 8.12.2 2020-12-16 07:45:54 +01:00
Vincent Laporte de8205f8bb coq_8_13: init at 8.13+β1 2020-12-15 21:13:40 +01:00
Mauricio Collares 8100c5a44b sage: 8.9 -> 9.2 fixups 2020-12-15 16:51:42 -03:00
Mauricio Collares 8b8cae779f pari: update tarball location, since it moved 2020-12-15 16:46:43 -03:00
Mauricio Collares 4058e45736 nauty: update tarball sha256 
The old `nauty` tarball is currently accessible at
https://distfiles.macports.org/nauty/nauty27r1.tar.gz. The diff is a
single line in genbg.c:

-    SUMMARY(&nout,t2-t1);
+    SUMMARY(nout,t2-t1);
 2020-12-15 16:46:43 -03:00
Mauricio Collares cf6364bed2 pynac: import patch to avoid deprecation warnings on python3.8 2020-12-14 19:24:19 -03:00
Mauricio Collares 5df948d4cc giac: 1.5.0-21 -> 1.5.0-87 2020-12-14 19:24:18 -03:00
Masanori Ogino 5c4136daf7 sage: 8.9 -> 9.2 2020-12-14 19:24:18 -03:00
Mario Rodas 7666fb25d0
Merge pull request #106856 from jbedo/delly 
delly: 0.8.5 -> 0.8.6
 2020-12-14 08:10:03 -05:00
Ryan Mulligan 41cdb14aac
Merge pull request #106611 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.23.8 -> 2.23.9
 2020-12-13 15:28:16 -08:00
Justin Bedo 6ce06dccfc
delly: 0.8.5 -> 0.8.6 2020-12-14 09:55:57 +11:00
Robert Scott d81a6bb6f2 hal-hardware-analyzer: 2.0.0 -> 3.1.9 2020-12-11 22:37:04 +00:00
Mario Rodas 8006772a05
Merge pull request #106612 from alyssais/cedille 
cedille: 1.1.1 -> 1.1.2; fix build
 2020-12-11 07:37:18 -05:00
Jörg Thalheim a1cacefde5
Merge pull request #106480 from SCOTT-HAMILTON/spdlog 2020-12-11 07:45:06 +00:00
Sandro f1e3b5160e
Merge pull request #103338 from hjones2199/siril 2020-12-11 07:35:23 +01:00
Hunter Jones 69741a7a48 siril: init at 0.99.6 2020-12-11 00:07:30 -06:00
Alyssa Ross 8b8dfc5d40
cedille: 1.1.1 -> 1.1.2; fix build 2020-12-10 23:07:32 +00:00
R. RyanTM aa2148eb1f picard-tools: 2.23.8 -> 2.23.9 2020-12-10 23:06:36 +00:00
SCOTT-HAMILTON d98fae8072
Update pkgs/applications/science/electronics/hal-hardware-analyzer/default.nix 
Co-authored-by: Drew <drewrisinger@users.noreply.github.com>
 2020-12-10 16:35:46 +01:00
SCOTT-HAMILTON ddf90cb942 spdlog: use nixpkgs' fmt instead of bundled one 2020-12-10 10:47:00 +01:00
markuskowa ba5c6f6075
Merge pull request #105133 from markuskowa/fix-gromacs 
Gromacs: fix SIMD flags, and OpenMP
 2020-12-08 09:10:38 +01:00
R. RyanTM cec747d712 clingo: 5.4.0 -> 5.4.1 2020-12-07 13:03:03 +00:00
Ben Gamari c98ce627d4
kicad-unstable: 2020-11-07 -> 2020-12-01 (#105743) 2020-12-03 19:17:32 -05:00
R. RyanTM b3f3197266 mavproxy: 1.8.27 -> 1.8.29 2020-12-03 14:33:38 +00:00
Sandro 30cdc8be48
Merge pull request #105650 from r-ryantm/auto-update/gretl 
gretl: 2020b -> 2020e
 2020-12-02 20:22:27 +01:00
Ryan Mulligan 4ce30eb63a
Merge pull request #105672 from r-ryantm/auto-update/hmmer 
hmmer: 3.3.1 -> 3.3.2
 2020-12-02 05:45:57 -08:00
Austin Seipp e601758166
abc-verifier: 2020.06.22 -> 2020.11.24 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2020-12-02 07:18:05 -06:00
Mario Rodas d48bc3e815
Merge pull request #105654 from r-ryantm/auto-update/gmsh 
gmsh: 4.7.0 -> 4.7.1
 2020-12-02 05:15:45 -05:00
Austin Seipp a3ae8a4fcf
Merge pull request #100750 from arcz/boolector 
boolector: enable darwin build
 2020-12-02 03:19:54 -06:00
R. RyanTM 6f50c5b18e hmmer: 3.3.1 -> 3.3.2 2020-12-02 09:00:15 +00:00
R. RyanTM cf89444f1e gmsh: 4.7.0 -> 4.7.1 2020-12-02 05:50:47 +00:00
R. RyanTM f9a694106b gretl: 2020b -> 2020e 2020-12-02 04:45:07 +00:00
Ben Darwin ee7d83e648 ants: unbreak on Darwin 2020-12-01 14:17:54 -05:00
Markus Kowalewski e90cff90f1
openmolcas: fix hash 2020-11-30 23:05:14 +01:00
Justin Bedo 5fc6258043
bwa: expand supported platforms 2020-11-30 09:46:51 +11:00
Artur Cygan da3c0ca0dd boolector: fix darwin build 2020-11-29 22:31:54 +01:00
Artur Cygan 38e6f15d98 btor2tools: fix install_name on darwin 2020-11-29 22:31:31 +01:00
Vincent Laporte 8ee7c2505f proverif: install emacs mode 2020-11-29 14:05:14 +01:00
Sandro 4dc26ca31d
Merge pull request #92646 from r-ryantm/auto-update/tla-toolbox 
tlaplusToolbox: 1.6.0 -> 1.7.0
 2020-11-29 04:01:21 +01:00
Sandro 2c0389680c
Merge pull request #90075 from dmrauh/add/gretl 
gretl: init at 2020b
 2020-11-28 22:10:05 +01:00
Dominik Michael Rauh 5f10cd5e0b
gretl: init at 2020b 2020-11-28 21:37:30 +01:00
Doron Behar 56a2c8bb22
Merge pull request #104171 from freezeboy/unbreak-dsview-qt515 
dsview: 0.99 -> 1.12
 2020-11-28 17:55:25 +02:00
Timo Kaufmann 819a2c571a
Merge pull request #105212 from r-ryantm/auto-update/jmol 
jmol: 14.31.17 -> 14.31.18
 2020-11-28 10:46:52 +01:00