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Author SHA1 Message Date
Timo Kaufmann 70ba695777 sage: replace JUPYTER_PATH patch by upstream patch
The patch was replaced by a better upstream patch that doesn't mvoe the
jupyter dir to the user's home.
2018-06-30 22:30:30 +02:00
Timo Kaufmann 398dad270a sage, arb: update sage dependencies arb and pynac
Removes the version pinning for arb and pynac by backporting the
upstream (sage) package upgrades. This necessitates a new patch for arb,
which was however already proposed and accepted upstream.
2018-06-30 17:05:56 +02:00
Timo Kaufmann 17e6b391eb sage: 8.1 -> 8.2, use system packages 2018-06-30 01:21:31 +02:00
Timo Kaufmann 424835acc8 symmetrica: add patches 2018-06-30 01:20:46 +02:00
Silvan Mosberger 57bccb3cb8 treewide: http -> https sources (#42676)
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
2018-06-28 20:43:35 +02:00
Timo Kaufmann 9ce041a8c7 pynac: 0.7.21 -> 0.7.22 (#42650) 2018-06-27 15:41:29 +02:00
Timo Kaufmann 2b22ecf01e palp: restrict platforms to linux (#42651) 2018-06-27 15:28:39 +02:00
Timo Kaufmann 08a59bb10d palp: fix runtime error introduced by #28029 (#42633)
After #28029 it is necessary to add "strictoverflow" to the disabled
hardening flags. That probably has something to do with the `-O3` option
in palps makefile.

This commit also adds a test to check for this regression (as it only
occured at runtime).
2018-06-27 09:42:26 +02:00
Maximilian Bosch 0dbfa47ed1 geogebra: 5-0-444-0 -> 5-0-472-0 (#41990)
Bumped to the latest version available.

Also tested the `web.archive.org` backup to avoid broken downloads when
the tarball is removed from the official download mirror.
2018-06-17 18:04:14 +02:00
R. RyanTM d50e65b346 pynac: 0.7.19 -> 0.7.21 (#41662)
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/pynac/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 0.7.21 with grep in /nix/store/883yhmfc1k4vz1dd37l73v7clvnyaa3v-pynac-0.7.21
- directory tree listing: https://gist.github.com/a0f53cebb1c4cae07c81edef938ac632
- du listing: https://gist.github.com/78800724710d0766e4add7ed1847c3fc
2018-06-08 19:02:38 +02:00
Ryan Mulligan af9d10a91b treewide: fix derivation names 2018-05-28 05:59:57 -07:00
Gabriel Ebner d96cc05a60 qalculate-gtk: 2.3.0 -> 2.5.0 2018-05-24 18:19:55 +02:00
Sarah Brofeldt 6ea941d3fd gmsh: gfortran -> nativeBuildInputs (fix #40976) (#40984) 2018-05-23 17:32:43 +02:00
Dmitry Kalinkin 65c3273250 form: init at 4.2.0 (#40693) 2018-05-22 20:17:32 +02:00
R. RyanTM b34f0a11dc pari: 2.9.4 -> 2.9.5
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/pari/versions.

These checks were done:

- built on NixOS
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gp passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/tex2mail passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gphelp passed the binary check.
- /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5/bin/gp-2.9 passed the binary check.
- 4 of 4 passed binary check by having a zero exit code.
- 0 of 4 passed binary check by having the new version present in output.
- found 2.9.5 with grep in /nix/store/18hjz56shfnp00r1pgslfy3zci2wk6m9-pari-2.9.5
- directory tree listing: https://gist.github.com/63c5da24ace1d863b434a462fc0d0123
- du listing: https://gist.github.com/d275cd2f3b274f52576dbab1bf9ebc9c
2018-05-21 08:53:00 +00:00
Pascal Wittmann 97ab2d40cb
Merge pull request #40614 from symphorien/ries
ries: init at 2018-04-11
2018-05-17 21:30:47 +02:00
Symphorien Gibol ea7404dcd7 ries: init at 2018-04-11 2018-05-17 14:09:33 +02:00
R. RyanTM de49ba6c3f nauty: 26r7 -> 26r10
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/nauty/versions.

These checks were done:

- built on NixOS
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dreadnaut passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/copyg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/listg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/labelg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/amtog passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/geng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/complg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/showg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/NRswitchg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/biplabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/addedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/deledgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/countg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/pickg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genrang passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/newedgeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/catg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/directg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentreeg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genquarticg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/ranlabg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/multig passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/planarg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/gentourng passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/linegraphg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/watercluster2 had a zero exit code or showed the expected version
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/dretodot passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/subdivideg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/vcolg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/delptg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/cubhamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/twohamg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/hamheuristic passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/converseg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genspecialg passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/genbgL passed the binary check.
- /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/shortg passed the binary check.
- Warning: no invocation of /nix/store/f2icw60ljw5s4nkj8hlgwxz83szfi1m7-nauty-26r10/bin/configure had a zero exit code or showed the expected version
- 38 of 40 passed binary check by having a zero exit code.
- 0 of 40 passed binary check by having the new version present in output.
- directory tree listing: https://gist.github.com/3bca602211d416ba58097f4f8880b6d0
- du listing: https://gist.github.com/4ac19efe14e18aae8fece0ec1a500bf1
2018-05-17 03:57:50 -07:00
Matthew Bauer e0d6edddd7 pspp: provide default icons & settings
psppire needs to be wrapped so that it will work outside of GNOME
desktop. We provide hicolor-icon-theme & gsettings-desktop-schemas.

Note that at runtime, I still get this error:

- Cannot create a converter for `IBM864' to `UTF-8': Invalid argument

Possibly a locale issue.

Fixes #40558
2018-05-15 15:42:13 -05:00
Timo Kaufmann 053d1e0339 giac: re-add lapack without atlas (#40 (#40458)
giac: re-add lapack without atlas
2018-05-14 12:47:45 +02:00
Timo Kaufmann 5550015b20 giac: remove liblapackWithAtlas dependency (#40430) 2018-05-13 18:33:51 +02:00
John Ericson ae429f8e55 yacas: 1.2.2 -> 1.6.1
They switched to cmake and talk about mingw cross, so I can kill
crossAttrs too.
2018-05-10 11:42:08 -04:00
Lengyel Balazs 1f1e16af73 mathematica: add mesa, fix libGL.so.1 not found messages 2018-05-04 13:10:26 +02:00
Matthew Bauer 57a4db2449 pspp: supports darwin 2018-05-01 00:45:05 -05:00
Michael Raskin 1f909a8dfc
Merge pull request #39403 from timokau/maxima-exl-testfailures-2
maxima-ecl: Disable more failing tests
2018-04-24 15:44:04 +00:00
Matthew Justin Bauer d57e6466e0
Merge pull request #39377 from timokau/pari-pthread
pari: Make pthread optional, remove unstable
2018-04-24 10:03:01 -05:00
Timo Kaufmann 396b5d9c65 maxima-ecl: Disable more failing tests 2018-04-24 13:38:44 +02:00
Timo Kaufmann 75b0866d0c pari: Make pthread optional, remove unstable 2018-04-24 12:54:59 +02:00
Michael Raskin bc6f7a9ccf
Merge pull request #39370 from timokau/singular-ntl
singular: Fix ntl dependency
2018-04-24 10:54:23 +00:00
Timo Kaufmann ba389086de singular: Fix ntl dependency 2018-04-24 12:04:28 +02:00
Timo Kaufmann b707c91814 maxima-ecl: Disable failing tests 2018-04-24 11:16:55 +02:00
Peter Simons 6799fcb42b R: 3.4.4 -> 3.5.0
Unfortunately, the new version fails its test suite AGAIN when the recommended
packages are not build. Makes one wonder whether maybe we should offer the R
developers CI builds that check this. I've reported the issue upstream, let's
see what happens.
2018-04-24 09:19:13 +02:00
Matthew Justin Bauer a02d6c99af
Merge pull request #34014 from mnacamura/mathematica-l10n
mathematica: enable installation of localized editions
2018-04-23 11:58:34 -05:00
Jörg Thalheim c7d278ad07
Merge pull request #39351 from matthewbauer/calc-on-darwin
calc: cleanup expression
2018-04-23 08:07:13 +01:00
Matthew Bauer 63507ada7d calc: cleanup expression
Fixes #39321

(Still needs testing on Linux)
2018-04-22 19:01:25 -05:00
Timo Kaufmann be0b8f2cf6 palp: init at 2.1 2018-04-21 20:40:59 -05:00
Timo Kaufmann 7dc6b2e3c3 pynac: init at 0.7.19 2018-04-21 20:40:22 -05:00
Matthew Justin Bauer 1bb28f26e8
Merge pull request #38810 from timokau/giac-improvements
giac: enable checks, separate outputs
2018-04-19 12:03:53 -05:00
Timo Kaufmann ddb7c0e930 lrcalc: init at 1.2 (#38755) 2018-04-19 08:42:06 +02:00
Michael Raskin 783204bdbc
Merge pull request #38768 from timokau/singular-4.1.1
singular: 3.1.7 -> 4.1.1
2018-04-12 11:40:06 +00:00
Timo Kaufmann eb119b045a maxima: add various fixes, re-add ecl support 2018-04-12 00:46:40 +02:00
Timo Kaufmann 32cf225ad9 giac: enable checks, separate outputs 2018-04-11 22:56:21 +02:00
Guillaume Maudoux b7dbff3aac gap-minimal: fix ofBorg evaluation 2018-04-11 17:08:54 +02:00
Timo Kaufmann fa3d0cef67 singular: 3.1.7 -> 4.1.1 2018-04-11 17:00:20 +02:00
Timo Kaufmann 6dc287802a gap: 4r8p3 -> 4r8p10 2018-04-11 15:22:03 +02:00
Jörg Thalheim fb3b3d6394 weka: use makeWrapper 2018-04-05 19:21:16 +01:00
R. RyanTM 05bffb5a0d weka: 3.8.2 -> 3.9.2
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/weka/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.9.2 with grep in /nix/store/rv6aq5p1qacvpvaw9vszawzidsh8xdl9-weka-3.9.2
- directory tree listing: https://gist.github.com/c1ee16794a22549147d4d292cad986e5
2018-04-05 09:08:28 -07:00
Gabriel Ebner 5a7e6732c5 qalculate-gtk: 2.2.1 -> 2.3.0 2018-03-31 17:42:47 +02:00
Symphorien Gibol 262fff26ed giac: fix url
the previous url was a moving target and was updated at each point
release. Use a frozen source instead.
2018-03-30 21:32:56 +02:00
Maximilian Bosch 2379cfc4ed
geogebra: add archive.org link for 5-0-444-0
The `geogebra` package is subject to break as upstream removes versioned
packages from their download server when five new releases are comming.

This is why I had to fix almost monthly the package by bumping the
version (these can be found by running `git log --online | grep
geogebra:`). As the package didn't cause any issues for several months
now I guess that using `archive.org` seems to be a suitable solution for
now.

/cc @sternenseemann @matthewbauer
2018-03-25 10:08:43 +02:00