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34262 commits

Author SHA1 Message Date
Vladimír Čunát 309c63c542
Merge branch 'master' into staging 2017-01-08 14:27:01 +01:00
Jay Mundrawala 3dc8b5d904 rustUnstableBin.rustc: Run patchelf on bin/rustdoc (#21746) 
Cargo seems to run rustdoc and produces an annoying error when
it tries to run.
 2017-01-08 10:53:44 +01:00
Daiderd Jordan 826d6aa6cd Merge pull request #21382 from johbo/darwin-pygtk-quartz-backend 
Darwin gtk2/pygtk quartz backend
 2017-01-08 00:18:33 +01:00
Domen Kožar 372e04f189
libpqxx: use gnused_422 2017-01-07 20:16:17 +01:00
Matthew Bauer ea053cad7a gtk-mac-integration: init at 2.0.8 2017-01-07 19:21:42 +01:00
Johannes Bornhold 0f67005c4a cairo: Add ApplicationServices as propagatedBuildInput 
Noticed that it caused depending packages to fail, like librsvg, imagemagiv, graphviz.
 2017-01-07 19:21:42 +01:00
schneefux 96504cd75c pythonPackages.discordpy: 0.15.1 -> 0.16 2017-01-07 20:02:05 +02:00
Anmol Sethi 2ef6af7afd libtermkey: from 0.18 to 0.19 2017-01-07 19:59:45 +02:00
Johannes Bornhold 8f7adffe4d pygtk: Add flag -ObjC for darwin 
Had to add this so that it was able to parse the headers from the frameworks.
 2017-01-07 17:35:09 +01:00
Johannes Bornhold 5a572f8018 gtk2: Use quartz backend on darwin 2017-01-07 17:35:09 +01:00
Johannes Bornhold 9f31633a50 librsvg: Add framework ApplicationServices for darwin 2017-01-07 17:31:10 +01:00
Johannes Bornhold 354c91df2e pango: Add darwin frameworks for fond rendering 2017-01-07 17:31:10 +01:00
Johannes Bornhold bbdca635cf cairo: Add CoreText for darwin 
This helps so that fonts are properly rendered in gtk when used with the backend
"quartz".
 2017-01-07 17:31:10 +01:00
Shea Levy 71fc7f9748 ghc-head: Fixes for new base and Cabal 2017-01-07 10:28:48 -05:00
Domen Kožar 133ba5f08a
GHC: 8.0.2-rc2 -> 8.0.2 2017-01-07 16:17:54 +01:00
Gabriel Ebner da9e9061f1 haskellPackages.hledger-diff: 0.2.0.6 -> 0.2.0.7 
Currently hledger-diff is broken because of the hledger-lib version
bump.
 2017-01-07 15:16:36 +01:00
Graham Christensen 428927ffa6
openjpeg2: patch for multiple CVEs 
-  Floating Point Exception (aka FPE or divide by zero) in
    opj_pi_next_cprl function in openjp2/pi.c:523 in OpenJPEG
    2.1.2. (CVE-2016-9112)

 -  There is a NULL Pointer Access in function imagetopnm of
    convert.c:1943(jp2) of OpenJPEG 2.1.2. image->comps[compno].data is
    not assigned a value after initialization(NULL). Impact is Denial of
    Service. (CVE-2016-9114)

 -  NULL Pointer Access in function imagetopnm of convert.c:2226(jp2) in
    OpenJPEG 2.1.2. Impact is Denial of Service. Someone must open a
    crafted j2k file. (CVE-2016-9116)

 -  Heap Buffer Overflow (WRITE of size 4) in function pnmtoimage of
    convert.c:1719 in OpenJPEG 2.1.2. (CVE-2016-9118)
 2017-01-07 06:51:31 -05:00
Peter Simons c5f8c7fe36 Merge pull request #21722 from mimadrid/fix/r-modules 
Fix a lot of rPackages
 2017-01-07 12:19:42 +01:00
Shea Levy 845dd121f8 ghc-head: Put ./boot into commonPreConfigure 2017-01-06 22:10:29 -05:00
Shea Levy c5c7911ac2 libuv: disable getaddrinfo tests. 
Seem to require network access, at least on darwin
 2017-01-06 21:09:49 -05:00
Franz Pletz 887e703d42 Merge pull request #21640 from mguentner/cpp_ipfs_api_update 
cpp-ipfs-api: 2016-11-09 -> 2017-01-04
 2017-01-07 00:44:01 +01:00
Vladimír Čunát 030065f6bd
libpng: 1.6.27 -> 1.6.28 2017-01-06 22:46:25 +01:00
Thomas Tuegel 8633dab72a Merge pull request #21650 from dbalan/ldns-1.7.0 
ldns 1.6.17 -> 1.7.0
 2017-01-06 14:46:18 -06:00
Vladimír Čunát 948e9edce6
zlib: maintenance 1.2.8 -> 1.2.10 
The removed CVEs should be fixed in the release.
 2017-01-06 21:45:20 +01:00
Vladimír Čunát 5ab9e23561
gtk3: maintenance 3.22.5 -> 3.22.6 2017-01-06 21:36:21 +01:00
Vladimír Čunát 9a9912a3e4
harfbuzz: 1.3.4 -> 1.4.1 2017-01-06 21:35:56 +01:00
Vladimír Čunát 1e253d54f5
libpng12: security 1.2.56 -> 1.2.57 
CVE-2016-10087
 2017-01-06 21:15:46 +01:00
Vladimír Čunát 7bdf2a4498
gdk-pixbuf: maintenance 2.36.2 -> 2.36.3 2017-01-06 21:08:33 +01:00
mimadrid 8954412fcc
r-modules: fix snpStats package 2017-01-06 21:07:25 +01:00
mimadrid b5a0925663
r-modules: fix VariantAnnotation package 2017-01-06 21:07:25 +01:00
mimadrid 6540b6507d
r-modules: fix rtracklayer package 2017-01-06 21:07:25 +01:00
mimadrid baf65d5000
r-modules: fix Rsubread package 2017-01-06 21:07:25 +01:00
mimadrid 9ebab25442
r-modules: fix gmapR package 2017-01-06 21:07:25 +01:00
mimadrid 286e86f3a5
r-modules: fix oligo package 2017-01-06 21:07:25 +01:00
mimadrid afd1a4c933
r-modules: fix affyio package 2017-01-06 21:07:25 +01:00
mimadrid 4c0c3c7493
r-modules: fix BitSeq package 2017-01-06 21:07:24 +01:00
mimadrid 272b447ea7
r-modules: fix bamsignals package 2017-01-06 21:07:24 +01:00
mimadrid c5e4754ca7
r-modules: fix affyPLM package 2017-01-06 21:07:24 +01:00
mimadrid 1d7fd8f3c4
r-modules: fix xml2 package 2017-01-06 21:07:24 +01:00
mimadrid 5b813c2ab0
r-modules: fix XBRL package 2017-01-06 21:07:24 +01:00
mimadrid 512be9e14a
r-modules: fix WhopGenome package 2017-01-06 21:07:24 +01:00
mimadrid f9d84f8b65
r-modules: fix tkrplot package 2017-01-06 21:07:24 +01:00
mimadrid 0b3e62bb12
r-modules: fix tiff package 2017-01-06 21:07:23 +01:00
mimadrid 9420fa23c6
r-modules: fix TAQMNGR package 2017-01-06 21:07:23 +01:00
mimadrid 2303e63116
r-modules: fix spate package 2017-01-06 21:07:23 +01:00
mimadrid fcbed4b654
r-modules: fix showtext package 2017-01-06 21:07:23 +01:00
mimadrid 8a6b58d51d
r-modules: fix seqminer package 2017-01-06 21:07:23 +01:00
mimadrid e1a5eeef06
r-modules: fix seqinr package 2017-01-06 21:07:22 +01:00
mimadrid 1ef67b9e78
r-modules: fix RVowpalWabbit package 2017-01-06 21:05:54 +01:00
mimadrid ae2723a144
r-modules: fix rtiff package 2017-01-06 21:05:54 +01:00