mimadrid
13a582688f
r-modules: fix RJaCGH package
2017-01-06 21:05:51 +01:00
mimadrid
9922867fa8
r-modules: fix Rhtslib package
2017-01-06 21:05:50 +01:00
mimadrid
bb60f939ae
r-modules: fix Rhpc package
2017-01-06 21:05:50 +01:00
mimadrid
e1bc505da9
r-modules: fix rggobi package
2017-01-06 21:05:50 +01:00
mimadrid
9f2b5e0425
r-modules: fix RGtk2 package
2017-01-06 21:05:50 +01:00
mimadrid
3342f8bd59
r-modules: fix RcppOctave package
2017-01-06 21:05:50 +01:00
mimadrid
ba86a39645
r-modules: fix RcppCNPy package
2017-01-06 21:05:49 +01:00
mimadrid
dd159d06b6
r-modules: fix rcdd package
2017-01-06 21:05:49 +01:00
mimadrid
8b229baf33
r-modules: fix rbamtools package
2017-01-06 21:05:49 +01:00
mimadrid
558f67e85f
r-modules: fix R2SWF package
2017-01-06 21:05:48 +01:00
mimadrid
277efe9896
r-modules: fix sysfonts package
2017-01-06 21:05:48 +01:00
mimadrid
062c9037d1
r-modules: fix PopGenome package
2017-01-06 21:05:48 +01:00
mimadrid
c5ef08cc65
r-modules: fix PKI package
2017-01-06 21:05:48 +01:00
mimadrid
1e9071948f
r-modules: fix mwaved package
2017-01-06 21:05:48 +01:00
mimadrid
4e7de52c26
r-module: fix kza package
2017-01-06 21:05:47 +01:00
mimadrid
debb12ce1a
r-module: fix jpeg package
2017-01-06 21:05:47 +01:00
mimadrid
e3a2c97c7b
r-modules: fix gmp package
2017-01-06 21:05:47 +01:00
mimadrid
72eb6a8644
r-modules: fix fftwtools package
2017-01-06 21:05:47 +01:00
mimadrid
427c4d954a
r-modules: fix fftw package
2017-01-06 21:05:47 +01:00
mimadrid
b88b8ea05b
r-modules: fix devEMF package
2017-01-06 21:05:47 +01:00
mimadrid
6c6aab3e5b
r-modules: fix cairoDevice package
2017-01-06 21:05:47 +01:00
mimadrid
f717538866
r-modules: fix git2r package
2017-01-06 21:05:47 +01:00
mimadrid
88fcfafafe
r-modules: fix BayesXsrc package
2017-01-06 21:05:46 +01:00
mimadrid
6f9124e118
r-modules: fix Cairo package
2017-01-06 21:05:46 +01:00
mimadrid
321d5a01b6
r-modules: fix seewave package
2017-01-06 16:31:30 +01:00
Mike Sperber
6c226b1e7a
rPackages.DescTools: unbreak build outside of Linux. ( #20787 )
...
DescTools does not require X during build, so remove it from that list.
2016-12-13 16:25:44 +01:00
Andreas Herrmann
98fce78cb3
r-modules: Fix png
package
...
The package requires the `dev` output of `libpng`.
2016-12-12 10:53:10 +01:00
Andreas Herrmann
cf3a2e99ad
r-modules: edgeR is broken due to broken url
2016-09-27 17:47:16 +02:00
Andreas Herrmann
54915ecf0d
r-modules: Fix h5 and rhdf5
...
and some packages that depend on them.
2016-09-27 17:46:06 +02:00
Peter Simons
23c122d277
r-openssl: fix build some more
2016-09-10 12:28:13 +02:00
Peter Simons
1196540a1d
r-openssl: fix build
2016-09-09 15:13:07 +02:00
Peter Simons
fe0256cd01
r-curl: fix build
2016-09-09 15:12:54 +02:00
Peter Simons
b2113f7893
r-XML: fix build
2016-09-09 14:36:49 +02:00
Thomas Tuegel
787875c287
r-stringi: fix build by including icu.dev output
2016-09-07 17:19:20 -05:00
Michael Stone
c1d24efd6a
darwin: R: provide gettext and gfortran as buildInputs on Darwin.
...
As discussed in #10623 , many R modules fail to build on Darwin without the
libraries and compilers provided by these packages.
For more detail, please see comment:
https://github.com/NixOS/nixpkgs/pull/10623#issuecomment-172375342
2016-07-22 13:31:40 -04:00
Ben Darwin
a896233396
jags: 3.4.0 -> 4.1.0 ( #16804 )
...
* jags: 3.4.0 -> 4.1.0
* unbreak rjags and dependent packages
2016-07-18 13:11:18 +02:00
Tuomas Tynkkynen
2a73de6e6c
treewide: Make explicit that 'dev' output of openssl is used
2016-05-19 10:02:23 +02:00
Tuomas Tynkkynen
3f8b08f506
treewide: Make explicit that 'dev' output of mpfr is used
2016-05-19 10:00:49 +02:00
Tuomas Tynkkynen
b465dc202f
boost: Kill unnecessary 'lib' output
...
This was split in somewhere pre-2014 without the current infra which
automates parts of this, in particular the output propagation.
2016-04-28 00:41:28 +03:00
Peter Simons
a6978ded09
Merge pull request #14144 from jefdaj/r-bioc-data-packages
...
r-modules: update CRAN, add Bioconductor data packages
2016-04-15 14:46:19 +02:00
Jeffrey David Johnson
2291885f9e
mark bioc packages broken; should match hydra now
2016-04-14 14:34:11 -07:00
Jeffrey David Johnson
f88843f545
mark bioc packages broken; should match hydra now
2016-04-14 09:54:46 -07:00
Jeffrey David Johnson
2f6581df00
r-modules: mark mzR broken
2016-04-12 14:16:43 -07:00
Jeffrey David Johnson
3c0fb5ede1
work on fixing up bioconductor packages
2016-03-31 11:36:39 -07:00
Jeffrey David Johnson
c9934bbcb8
work on fixing up bioconductor packages
2016-03-31 11:17:21 -07:00
Jeffrey David Johnson
518fd135ed
work on fixing up bioconductor packages
2016-03-27 23:14:24 -07:00
Jeffrey David Johnson
e98a231af8
work on fixing up bioconductor packages
2016-03-26 11:26:29 -07:00
Jeffrey David Johnson
05fc143451
work on fixing up bioconductor packages
2016-03-25 09:15:02 -07:00
Jeffrey David Johnson
1911d4925e
work on fixing up bioconductor package
2016-03-25 00:30:20 -07:00
Jeffrey David Johnson
4cd2202918
work on fixing up bioconductor packages
2016-03-24 14:51:21 -07:00
Jeffrey David Johnson
66bcbfb93d
r-modules: update CRAN, add Bioconductor data pkgs
2016-03-22 22:50:54 -07:00
Tuomas Tynkkynen
555292017e
treewide: Mass replace 'xorg.libXft}/lib' to refer the 'out' output
2016-01-24 10:03:37 +02:00
Vladimír Čunát
716aac2519
Merge branch 'staging' into closure-size
2016-01-19 09:55:31 +01:00
Asko Soukka
a225a650bf
R: fix Darwin build
...
Merged manually from https://github.com/NixOS/nixpkgs/pull/10623 .
2016-01-06 22:20:40 +01:00
Michel Kuhlmann
26f80d7a6f
r-modules: update list of broken packages
...
Closes https://github.com/NixOS/nixpkgs/pull/12181 .
2016-01-06 21:50:36 +01:00
Vladimír Čunát
f9f6f41bff
Merge branch 'master' into closure-size
...
TODO: there was more significant refactoring of qtbase and plasma 5.5
on master, and I'm deferring pointing to correct outputs to later.
2015-12-31 09:53:02 +01:00
Peter Simons
3a8112f7da
r-modules: prefer gsl 1.x since 2.x is unsupported by r-gsl-1.9.x
2015-12-29 21:22:59 +01:00
Luca Bruno
a412927924
Merge remote-tracking branch 'origin/master' into closure-size
2015-11-25 21:37:30 +01:00
Peter Simons
de02462a36
r-modules: update list of broken packages
2015-11-25 11:39:28 +01:00
Nikolay Amiantov
287f99bada
r-modules: use HTTPS, allow passing args from generated set, use MRAN
2015-11-25 11:39:28 +01:00
Peter Simons
fa5de61315
r-tikzDevice: update to new texlive
2015-11-24 17:30:28 +01:00
Vladimír Čunát
333d69a5f0
Merge staging into closure-size
...
The most complex problems were from dealing with switches reverted in
the meantime (gcc5, gmp6, ncurses6).
It's likely that darwin is (still) broken nontrivially.
2015-11-20 14:32:58 +01:00
Peter Simons
d7e6a46770
r-modules: update list of broken builds to avoid Hydra errors
2015-11-18 15:23:46 +01:00
Michel Kuhlmann
cab1f3de5e
R: regenerate CRAN packages
2015-11-17 14:34:27 +01:00
Asko Soukka
d8e3a981c5
r-modules: init IRkernel packages
2015-10-30 03:48:23 +02:00
Vladimír Čunát
99e4371526
curl: split into multiple outputs
...
Also use pkgconfig to be safer and fix (some) referrers.
2015-10-13 20:18:48 +02:00
Michel Kuhlmann
ec8f31d26c
R: fix some modules with configure-shebang-error
...
- xml2: fix configure script
- rversion, devtools: mark as unbroken
dependency R-curl was fixed in 513e31185b
2015-10-12 10:02:48 +02:00
Peter Simons
7c516259e7
r-modules: update list of broken packages
2015-10-05 14:15:41 +02:00
Vladimír Čunát
38313d5d87
libxml2,libxslt: split into multiple outputs
...
Fixed all references, hopefully.
libxml2Python is slightly hacky now, but it seems to work.
2015-10-05 13:44:16 +02:00
Karn Kallio
94629aa57d
R: regenerate CRAN and BIOC packages
2015-10-04 20:06:49 +02:00
Nikolay Amiantov
513e31185b
R-curl: fix configure script
2015-10-04 20:06:49 +02:00
Vladimír Čunát
88c9f8b574
xlibs: replace occurrences by xorg
...
This seems to have been confusing people, using both xlibs and xorg, etc.
- Avoided renaming local (and different) xlibs binding in gcc*.
- Fixed cases where both xorg and xlibs were used.
Hopefully everything still works as before.
2015-09-15 12:54:34 +02:00
Vladimír Čunát
21e3ff658a
x11: replace its usage by xlibsWrapper directly
...
Scilab note: the parameters already had pointed to nonexistent dirs
before this set of refactoring. But that config wasn't even used by
default.
2015-09-15 12:08:24 +02:00
Bjørn Forsman
22321f2e58
cudatoolkit: don't move $out/include to $out/usr_include
...
This effectively reverts 86c283824f
("If cuda headers are presented to nix [...]") and all the following
workarounds that was added due to that commit.
As far as I can tell[1] this hack isn't needed anymore. And moving
includes to $out/usr_include causes pain for cudatoolkit users, so
better get rid of it.
In patches that did more than the $out/usr_include workaround, I only
changed the line back to $out/include instead of re-generating the
patches and fully removing the changed line.
[1]: I build tested blender and caffe, and temporarily added
recurseIntoAttrs to rPackages and haskellPackages so that nox-review
could get proper coverage. However, many of the packages do not build
even before this patch. I also built CUDA samples with cudatoolkit7
that ran fine.
2015-09-10 10:35:40 +02:00
Peter Simons
5d1bcf2f4e
R: fix Hydra build & evaluation errors
2015-08-06 20:13:50 +02:00
Peter Simons
7a0fa8f898
r-modules: fix evaluation errors
2015-08-06 20:13:49 +02:00
Peter Simons
73ad191afb
r-modules: fix Hydra evaluation errors
2015-08-06 20:13:49 +02:00
Nikolay Amiantov
e3461ce259
rPackages.stringi: add ICU data tables
2015-07-28 12:33:29 +03:00
Peter Simons
b59685de83
r-stringi: fix build
2015-07-12 02:38:42 +02:00
Michel Kuhlmann
bb2b683e63
R: regenerate CRAN and BIOC packages
2015-07-09 14:52:17 +02:00
Peter Simons
bb42c215e2
R: improve support for CRAN and Bioconductor package sets
...
- Update the instructions for re-generating each of the package set files.
- Provide test-evaluation.nix expression to verify that the package sets evaluates.
- Update list of known broken packages.
2015-06-17 23:19:56 +02:00
Jeffrey David Johnson
93a742fd28
R: add support for Bioconductor packages
2015-06-17 23:19:56 +02:00
Peter Simons
362e60a5dc
r-modules: fix rapportools
2015-06-16 12:48:50 +02:00
Peter Simons
21c18c4f0a
r-modules: fix rapport
2015-06-16 12:48:50 +02:00
Peter Simons
ccd6988b3d
r-modules: fix xml2
2015-06-16 12:48:50 +02:00
Peter Simons
8ac6350ce7
r-modules: fix pander
2015-06-16 12:48:50 +02:00
Peter Simons
9fc5317055
r-modules: fix curl
2015-06-16 12:48:50 +02:00
Peter Simons
d4c810cccd
r-modules: disable broken packages to avoid Hydra evaluation errors
2015-06-16 12:48:49 +02:00
Thomas Tuegel
8245caedf1
rPackages.SamplerCompare: build with openblas
2015-06-09 11:47:40 -05:00
Thomas Tuegel
58754130cc
rPackages.slfm: build with openblas
2015-06-09 11:47:26 -05:00
Thomas Tuegel
77aa1c990e
rPackages.Mposterior: build with openblas
2015-06-09 11:47:12 -05:00
Thomas Tuegel
b120a737fd
rPackages.BayesLogit: build with openblas
2015-06-09 11:43:00 -05:00
Peter Simons
949746f9f5
r-modules: disable broken builds
2015-05-15 13:48:38 +02:00
Peter Simons
278df52729
r-xml2: fix build
2015-05-15 13:47:27 +02:00
Peter Simons
aaa9f837a9
r-modules: fix Hydra evaluation errors
2015-05-13 11:31:39 +02:00
Michel Kuhlmann
aabee7eb46
r-modules: regenerate 2015-05-11T14:48:00+0100
2015-05-12 07:47:41 +02:00
Peter Simons
e313cd711e
r-modules: disable broken builds on Hydra
2015-04-20 17:38:46 +02:00
Peter Simons
0b088ce581
r-modules: revert "disable builds that depend on broken gdal library"
...
This reverts commit 9e9b5e6e69
. gdal has
been fixed in 1645795c53
.
2015-04-19 17:52:50 +02:00
Peter Simons
9e9b5e6e69
r-modules: disable builds that depend on broken gdal library
2015-04-17 20:02:46 +02:00
Michel Kuhlmann
cc5f5f0fd3
r-modules: update from CRAN state at 2015-04-16T11:23:00+0100
...
Closes https://github.com/NixOS/nixpkgs/pull/7411 .
2015-04-17 15:38:12 +02:00