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1207 commits

Author SHA1 Message Date
Matthew Daiter 093130f802 openmvs: init at current master (#25672) 
* openmvs: init at current master

* openmvs: simplify expression

* openmvs: init at unstable-2017-05-01
 2017-05-12 20:07:11 +01:00
Jörg Thalheim be19ad150c Merge pull request #25594 from mimadrid/update/htslib-1.4 
Update/htslib 1.4
 2017-05-11 07:08:56 +01:00
mimadrid 8d1bebf83c
bcftools: 1.3.1 -> 1.4 2017-05-11 07:04:33 +01:00
Peter Hoeg 32b57bec77 Merge pull request #25588 from mimadrid/update/weka-3.8.1 
weka: 3.8.0 -> 3.8.1
 2017-05-09 17:39:05 +08:00
mdaiter fdd28b6fe0
openmvg: clarify Git version 
fixes #25615
 2017-05-09 09:39:41 +01:00
Frederik Rietdijk 183cada05a Merge pull request #25590 from mimadrid/update/cytoscape-3.5.1 
cytoscape: 3.4.0 -> 3.5.1
 2017-05-09 10:03:20 +02:00
mimadrid 9073e67568
samtools: 1.3.1 -> 1.4 2017-05-07 23:15:48 +02:00
mimadrid 0ed5b1c867
cytoscape: 3.4.0 -> 3.5.1 2017-05-07 23:05:59 +02:00
mimadrid bfc3d976f3
weka: 3.8.0 -> 3.8.1 2017-05-07 22:54:09 +02:00
Michael Raskin 587ed894a4 Merge pull request #25480 from mdaiter/openmvg 
openmvg: init at v1.1
 2017-05-05 15:58:17 +02:00
Matthew Daiter c6385eb0f5 openmvg: init at v1.1 2017-05-05 15:51:32 +02:00
Daniel Frank f3f38eccbb kicad: update to 4.0.6 2017-05-04 20:39:20 +02:00
Peter Simons 5e5d16f425 R: import upstream patch to fix broken "R CMD Sweave" command 
The command "R CMD Sweave" always exits with error code "1", even if the
command was successful. This upstream patch remedies this issue.
 2017-05-03 14:20:41 +02:00
Aneesh Agrawal bd9246b009 treewide: Always use integers for meta.priority 
Meta attributes types are now enforce as of commit
90b9719f4f,
so ensure meta.priority is always set to an integer.

This fixes evaluation of `linuxPackages_latest.virtualbox`
(the impetus for this commit)
and other packages that use lowPrio or hiPrio.
 2017-05-02 01:43:22 -04:00
Michael Raskin 41475012eb Merge pull request #25164 from marsam/master 
Homogenize abc-verifier, dwm, osmctools homepages
 2017-05-01 15:47:15 +02:00
Michael Raskin 49c419cf3e Merge pull request #25117 from lucas8/cubicle 
cubicle: init at 1.0.2
 2017-05-01 14:26:52 +02:00
Michael Raskin 7ef99bf054 Merge pull request #24085 from bcdarwin/ants 
ants: set $ANTSPATH variable in shell scripts
 2017-04-30 23:03:06 +02:00
Daiderd Jordan 5e3de3938e Merge pull request #25217 from LnL7/darwin-csdp 
csdp: fix darwin build
 2017-04-30 14:33:30 +02:00
Michael Raskin ce9c7dd0d6 Merge pull request #21822 from rht/master 
coq_HEAD: Update to the latest commit
 2017-04-30 12:49:20 +02:00
Maximilian Bosch b12f76ddd3 geogebra: 5-0-350-0 -> 5-0-355-0 (#25324) 2017-04-29 14:34:57 +01:00
Peter Hoeg bf4710fa80 speedcrunch: allow building with qt 5.8 2017-04-28 08:41:58 +08:00
Daiderd Jordan 2bd39ab013
csdp: fix darwin build 
the build sets CC=clang causing it to essentially ignore the cc wrapper
 2017-04-27 20:55:09 +02:00
lucas8 eedc6799b6
cubicle: init at 1.0.2 2017-04-25 22:02:42 +02:00
Peter Simons d16c38a260 R: update to version 3.4.0 
The new version needs TZ configured to a value other than "UTC" for the test
suite to succeed. Otherwise, an assumption in "reg-tests-1d.R" won't hold that
expects

  d <- as.POSIXlt("2016-12-06"); d$zone <- 1; format(d)

to throw an error about an invalid time zone.
 2017-04-24 15:39:08 +02:00
Mario Rodas 0e7b608ab0 abc-verifier: Add http url scheme to abc homepage 2017-04-23 18:45:36 -05:00
Nikolay Amiantov 13162b9ddb fritzing: 0.9.0b -> 0.9.3b 
Fixes #24943.
 2017-04-23 17:53:11 +03:00
Vladimír Čunát 9fc61d0db5
simgrid: fixup sandboxed build after update #24915 2017-04-16 14:15:32 +02:00
Sophia Gold 76b8ce3023 simgrid: 3.11.1 -> 3.15 2017-04-15 08:22:02 +02:00
Matthias Beyer 6239da6ade diamond: init at 0.8.36 2017-04-12 13:05:57 +02:00
Justin Bedő c5015b77af platypus: fix platforms metadata (#24666) 2017-04-06 10:10:54 +01:00
Maximilian Bosch 1e295260e2
geogebra: 5-0-346-0 -> 5-0-350-0 2017-03-30 21:55:05 +02:00
Robin Gloster b9948fedc6
ncbi_tools: mark as broken and remove -fPIC 
PIC is used by default since 16.09
 2017-03-30 16:23:34 +02:00
Robin Gloster 13ab07d95a
maxima-ecl: mark as broken 2017-03-30 16:23:34 +02:00
Robin Gloster 536b782450
libsingular: does not build on i686 2017-03-30 16:23:34 +02:00
Joachim F e15b666f79 Merge pull request #24416 from Twey/redprl-2017-03-28 
redprl: 2016-09-22 -> 2017-03-28
 2017-03-30 14:02:10 +01:00
Robin Gloster f87de53883
sage: mark as broken 2017-03-30 12:06:08 +02:00
James ‘Twey’ Kay c54588d250 redprl: 2016-09-22 -> 2017-03-28 2017-03-28 21:02:30 +01:00
Vladimír Čunát 96d41e393d
treewide: purge maintainers.urkud 
It's sad, but he's been inactive for the last five years.
Keeping such people in meta.maintainers is counter-productive.
 2017-03-27 19:52:29 +02:00
Thomas Tuegel 299c842df2
qgroundcontrol: broken on Qt 5.6 2017-03-25 08:49:39 -05:00
Maximilian Bosch 9787b2b808
geogebra: 5-0-338-0 -> 5-0-346-0 2017-03-24 22:16:57 +01:00
Peter Hoeg 317734f99c speedcrunch: stick to qt 5.7 as 5.8 is broken 2017-03-25 00:39:30 +08:00
Ben Darwin fbc9a4d7dc ants: set $ANTSPATH variable in shell scripts 2017-03-22 16:01:05 -04:00
Michael Raskin 47183c813e golly-beta: init at 2.9b2 to test GL issues 2017-03-22 17:02:55 +01:00
Franz Pletz bfb7890fa0 Merge pull request #24191 from jbedo/bedtools 
bedtools: fix clang build
 2017-03-22 15:30:19 +01:00
Justin Bedo 56aeb271c9
bedtools: fix clang build 2017-03-22 12:00:24 +11:00
Dan Peebles 7ad3fd7ca7 neuron: fix on clang 3.8 and above 
This is in preparation for upgrading Darwin stdenv to LLVM 4
 2017-03-21 01:00:18 -04:00
Michael Raskin 4d5f33deff Merge pull request #23376 from bcdarwin/ants 
ANTs: init at 2.1.0 (0gyys1lf) and update ITK accordingly
 2017-03-18 18:42:24 +01:00
rht bbd1c3d58a
coq_HEAD: Update once more 2017-03-18 01:51:38 +03:00
rht 7264efb5cb
Fold in specific ocaml version choice into let 2017-03-18 01:51:37 +03:00
rht 975d040f07
coq_HEAD: Update to the latest commit 2017-03-18 01:50:26 +03:00