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suitesparse: remove unnecessary patches
This commit is contained in:
Thomas Tuegel
parent
b02f300c44
commit
e5ee1a0577
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@ -1,27 +0,0 @@
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From e0fee492a315ce1ef8697b056af210beb1465334 Mon Sep 17 00:00:00 2001
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From: Thomas Tuegel <ttuegel@gmail.com>
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Date: Mon, 15 Dec 2014 10:18:12 -0600
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Subject: [PATCH 2/3] set install dir
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---
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SuiteSparse_config/SuiteSparse_config.mk | 4 ++--
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1 file changed, 2 insertions(+), 2 deletions(-)
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diff --git a/SuiteSparse_config/SuiteSparse_config.mk b/SuiteSparse_config/SuiteSparse_config.mk
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index e1514bf..f1046a6 100644
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--- a/SuiteSparse_config/SuiteSparse_config.mk
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+++ b/SuiteSparse_config/SuiteSparse_config.mk
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@@ -95,8 +95,8 @@ F77LIB =
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# LIB = -lm
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# For "make install"
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-INSTALL_LIB = /usr/local/lib
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-INSTALL_INCLUDE = /usr/local/include
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+INSTALL_LIB = @out@/lib
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+INSTALL_INCLUDE = @out@/include
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# Which version of MAKE you are using (default is "make")
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# MAKE = make
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--
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2.1.3
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@ -1,27 +0,0 @@
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From a99cca30cfd965683564ae024e8ecc615c61697a Mon Sep 17 00:00:00 2001
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From: Thomas Tuegel <ttuegel@gmail.com>
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Date: Mon, 15 Dec 2014 10:24:08 -0600
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Subject: [PATCH 3/3] blas lapack flags
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---
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SuiteSparse_config/SuiteSparse_config.mk | 4 ++--
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1 file changed, 2 insertions(+), 2 deletions(-)
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diff --git a/SuiteSparse_config/SuiteSparse_config.mk b/SuiteSparse_config/SuiteSparse_config.mk
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index f1046a6..1710162 100644
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--- a/SuiteSparse_config/SuiteSparse_config.mk
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+++ b/SuiteSparse_config/SuiteSparse_config.mk
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@@ -119,8 +119,8 @@ INSTALL_INCLUDE = @out@/include
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# naming the BLAS and LAPACK library (*.a or *.so) files.
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# This is probably slow ... it might connect to the Standard Reference BLAS:
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- BLAS = -lblas -lgfortran
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- LAPACK = -llapack
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+ BLAS = @blasFlags@
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+ LAPACK = @lapackFlags@
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# MKL
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# BLAS = -Wl,--start-group $(MKLROOT)/lib/intel64/libmkl_intel_lp64.a $(MKLROOT)/lib/intel64/libmkl_core.a $(MKLROOT)/lib/intel64/libmkl_intel_thread.a -Wl,--end-group -lpthread -lm
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--
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2.1.3
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@ -1,452 +0,0 @@
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#===============================================================================
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# SuiteSparse_config.mk: common configuration file for the SuiteSparse
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#===============================================================================
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# This file contains all configuration settings for all packages authored or
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# co-authored by Tim Davis:
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#
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# Package Version Description
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# ------- ------- -----------
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# AMD 1.2 or later approximate minimum degree ordering
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# COLAMD 2.4 or later column approximate minimum degree ordering
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# CCOLAMD 1.0 or later constrained column approximate minimum degree ordering
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# CAMD any constrained approximate minimum degree ordering
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# UMFPACK 4.5 or later sparse LU factorization, with the BLAS
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# CHOLMOD any sparse Cholesky factorization, update/downdate
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# KLU 0.8 or later sparse LU factorization, BLAS-free
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# BTF 0.8 or later permutation to block triangular form
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# LDL 1.2 or later concise sparse LDL'
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# CXSparse any extended version of CSparse (int/long, real/complex)
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# SuiteSparseQR any sparse QR factorization
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# RBio 2.0 or later read/write sparse matrices in Rutherford-Boeing format
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#
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# By design, this file is NOT included in the CSparse makefile.
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# That package is fully stand-alone. CSparse is primarily for teaching;
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# production code should use CXSparse.
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#
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# The SuiteSparse_config directory and the above packages should all appear in
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# a single directory, in order for the Makefile's within each package to find
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# this file.
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#
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# To enable an option of the form "# OPTION = ...", edit this file and
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# delete the "#" in the first column of the option you wish to use.
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#
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# The use of METIS 4.0.1 is optional. To exclude METIS, you must compile with
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# CHOLMOD_CONFIG set to -DNPARTITION. See below for details. However, if you
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# do not have a metis-4.0 directory inside the SuiteSparse directory, the
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# */Makefile's that optionally rely on METIS will automatically detect this
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# and compile without METIS.
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#------------------------------------------------------------------------------
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# Generic configuration
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#------------------------------------------------------------------------------
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# Using standard definitions from the make environment, typically:
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#
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# CC cc C compiler
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# CXX g++ C++ compiler
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# CFLAGS [ ] flags for C and C++ compiler
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# CPPFLAGS [ ] flags for C and C++ compiler
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# TARGET_ARCH [ ] target architecture
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# FFLAGS [ ] flags for Fortran compiler
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# RM rm -f delete a file
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# AR ar create a static *.a library archive
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# ARFLAGS rv flags for ar
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# MAKE make make itself (sometimes called gmake)
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#
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# You can redefine them here, but by default they are used from the
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# default make environment.
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# To use OpenMP add -openmp to the CFLAGS
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# If OpenMP is used, it is recommended to define CHOLMOD_OMP_NUM_THREADS
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# as the number of cores per socket on the machine being used to maximize
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# memory performance
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CFLAGS =
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# CFLAGS = -g
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# for the icc compiler and OpenMP:
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# CFLAGS = -openmp
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# C and C++ compiler flags. The first three are standard for *.c and *.cpp
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# Add -DNTIMER if you do use any timing routines (otherwise -lrt is required).
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# CF = $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -O3 -fexceptions -fPIC -DNTIMER
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CF = $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -O3 -fexceptions -fPIC
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# for the MKL BLAS:
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# CF = $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -O3 -fexceptions -fPIC -I$(MKLROOT)/include -D_GNU_SOURCE
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# with no optimization:
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# CF = $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -fexceptions -fPIC
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# ranlib, and ar, for generating libraries. If you don't need ranlib,
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# just change it to RANLAB = echo
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RANLIB = ranlib
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ARCHIVE = $(AR) $(ARFLAGS)
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# copy and delete a file
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CP = cp -f
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MV = mv -f
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# Fortran compiler (not required for 'make' or 'make library')
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F77 = gfortran
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F77FLAGS = $(FFLAGS) -O
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F77LIB =
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# C and Fortran libraries. Remove -lrt if you don't have it.
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LIB = -lm -lrt
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# Using the following requires CF = ... -DNTIMER on POSIX C systems.
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# LIB = -lm
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# For "make install"
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INSTALL_LIB = @out@/lib
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INSTALL_INCLUDE = @out@/include
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# Which version of MAKE you are using (default is "make")
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# MAKE = make
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# MAKE = gmake
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#------------------------------------------------------------------------------
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# BLAS and LAPACK configuration:
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#------------------------------------------------------------------------------
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# UMFPACK and CHOLMOD both require the BLAS. CHOLMOD also requires LAPACK.
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# See Kazushige Goto's BLAS at http://www.cs.utexas.edu/users/flame/goto/ or
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# http://www.tacc.utexas.edu/~kgoto/ for the best BLAS to use with CHOLMOD.
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# LAPACK is at http://www.netlib.org/lapack/ . You can use the standard
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# Fortran LAPACK along with Goto's BLAS to obtain very good performance.
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# CHOLMOD gets a peak numeric factorization rate of 3.6 Gflops on a 3.2 GHz
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# Pentium 4 (512K cache, 4GB main memory) with the Goto BLAS, and 6 Gflops
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# on a 2.5Ghz dual-core AMD Opteron.
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# These settings will probably not work, since there is no fixed convention for
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# naming the BLAS and LAPACK library (*.a or *.so) files.
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# This is probably slow ... it might connect to the Standard Reference BLAS:
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BLAS = -lf77blas -latlas -lcblas -lgfortran
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LAPACK = -llapack -latlas -lcblas
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# MKL
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# BLAS = -Wl,--start-group $(MKLROOT)/lib/intel64/libmkl_intel_lp64.a $(MKLROOT)/lib/intel64/libmkl_core.a $(MKLROOT)/lib/intel64/libmkl_intel_thread.a -Wl,--end-group -lpthread -lm
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# LAPACK =
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# ACML
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# BLAS = -lacml -lgfortran
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# LAPACK =
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# OpenBLAS
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# BLAS = -lopenblas
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# LAPACK =
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# NOTE: this next option for the "Goto BLAS" has nothing to do with a "goto"
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# statement. Rather, the Goto BLAS is written by Dr. Kazushige Goto.
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# Using the Goto BLAS:
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# BLAS = -lgoto -lgfortran -lgfortranbegin
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# BLAS = -lgoto2 -lgfortran -lgfortranbegin -lpthread
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# Using non-optimized versions:
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# BLAS = -lblas_plain -lgfortran -lgfortranbegin
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# LAPACK = -llapack_plain
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# BLAS = -lblas_plain -lgfortran -lgfortranbegin
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# LAPACK = -llapack
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# The BLAS might not contain xerbla, an error-handling routine for LAPACK and
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# the BLAS. Also, the standard xerbla requires the Fortran I/O library, and
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# stops the application program if an error occurs. A C version of xerbla
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# distributed with this software (SuiteSparse_config/xerbla/libcerbla.a)
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# includes a Fortran-callable xerbla routine that prints nothing and does not
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# stop the application program. This is optional.
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# XERBLA = ../../SuiteSparse_config/xerbla/libcerbla.a
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# If you wish to use the XERBLA in LAPACK and/or the BLAS instead,
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# use this option:
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XERBLA =
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# If you wish to use the Fortran SuiteSparse_config/xerbla/xerbla.f instead,
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# use this:
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# XERBLA = ../../SuiteSparse_config/xerbla/libxerbla.a
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#------------------------------------------------------------------------------
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# GPU configuration for CHOLMOD and SPQR
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#------------------------------------------------------------------------------
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# no cuda
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CUDA_ROOT =
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GPU_BLAS_PATH =
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GPU_CONFIG =
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CUDA_PATH =
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CUDART_LIB =
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CUBLAS_LIB =
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CUDA_INC_PATH =
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NV20 =
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NV30 =
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NV35 =
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NVCC = echo
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NVCCFLAGS =
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# with cuda for CHOLMOD
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# CUDA_ROOT = /usr/local/cuda
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# GPU_BLAS_PATH = $(CUDA_ROOT)
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# with 4 cores (default):
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# GPU_CONFIG = -I$(CUDA_ROOT)/include -DGPU_BLAS
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# with 10 cores:
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# GPU_CONFIG = -I$(CUDA_ROOT)/include -DGPU_BLAS -DCHOLMOD_OMP_NUM_THREADS=10
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# CUDA_PATH = $(CUDA_ROOT)
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# CUDART_LIB = $(CUDA_ROOT)/lib64/libcudart.so
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# CUBLAS_LIB = $(CUDA_ROOT)/lib64/libcublas.so
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# CUDA_INC_PATH = $(CUDA_ROOT)/include/
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# NV20 = -arch=sm_20 -Xcompiler -fPIC
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# NV30 = -arch=sm_30 -Xcompiler -fPIC
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# NV35 = -arch=sm_35 -Xcompiler -fPIC
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# NVCC = $(CUDA_ROOT)/bin/nvcc
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# NVCCFLAGS = $(NV20) -O3 -gencode=arch=compute_20,code=sm_20 -gencode=arch=compute_30,code=sm_30 -gencode=arch=compute_35,code=sm_35
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# was NVCC = $(CUDA_ROOT)/bin/nvcc $(NV35) $(NV30) $(NV20)
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#------------------------------------------------------------------------------
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# METIS, optionally used by CHOLMOD
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#------------------------------------------------------------------------------
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# If you do not have METIS, or do not wish to use it in CHOLMOD, you must
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# compile CHOLMOD with the -DNPARTITION flag.
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# The path is relative to where it is used, in CHOLMOD/Lib, CHOLMOD/MATLAB, etc.
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# You may wish to use an absolute path. METIS is optional. Compile
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# CHOLMOD with -DNPARTITION if you do not wish to use METIS.
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# METIS_PATH = ../../metis-4.0
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# METIS = ../../metis-4.0/libmetis.a
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#------------------------------------------------------------------------------
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# UMFPACK configuration:
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#------------------------------------------------------------------------------
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# Configuration flags for UMFPACK. See UMFPACK/Source/umf_config.h for details.
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#
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# -DNBLAS do not use the BLAS. UMFPACK will be very slow.
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# -D'LONGBLAS=long' or -DLONGBLAS='long long' defines the integers used by
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# LAPACK and the BLAS (defaults to 'int')
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# -DNSUNPERF do not use the Sun Perf. Library (default is use it on Solaris)
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# -DNRECIPROCAL do not multiply by the reciprocal
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# -DNO_DIVIDE_BY_ZERO do not divide by zero
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# -DNCHOLMOD do not use CHOLMOD as a ordering method. If -DNCHOLMOD is
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# included in UMFPACK_CONFIG, then UMFPACK does not rely on
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# CHOLMOD, CAMD, CCOLAMD, COLAMD, and METIS.
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UMFPACK_CONFIG =
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# uncomment this line to compile UMFPACK without CHOLMOD:
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# UMFPACK_CONFIG = -DNCHOLMOD
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#------------------------------------------------------------------------------
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# CHOLMOD configuration
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#------------------------------------------------------------------------------
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# CHOLMOD Library Modules, which appear in libcholmod.a:
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# Core requires: none
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# Check requires: Core
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# Cholesky requires: Core, AMD, COLAMD. optional: Partition, Supernodal
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# MatrixOps requires: Core
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# Modify requires: Core
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# Partition requires: Core, CCOLAMD, METIS. optional: Cholesky
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# Supernodal requires: Core, BLAS, LAPACK
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#
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# CHOLMOD test/demo Modules (all are GNU GPL, do not appear in libcholmod.a):
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# Tcov requires: Core, Check, Cholesky, MatrixOps, Modify, Supernodal
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# optional: Partition
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# Valgrind same as Tcov
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# Demo requires: Core, Check, Cholesky, MatrixOps, Supernodal
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# optional: Partition
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#
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# Configuration flags:
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# -DNCHECK do not include the Check module. License GNU LGPL
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# -DNCHOLESKY do not include the Cholesky module. License GNU LGPL
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# -DNPARTITION do not include the Partition module. License GNU LGPL
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# also do not include METIS.
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# -DNCAMD do not use CAMD, etc from Partition module. GNU LGPL
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# -DNGPL do not include any GNU GPL Modules in the CHOLMOD library:
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# -DNMATRIXOPS do not include the MatrixOps module. License GNU GPL
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# -DNMODIFY do not include the Modify module. License GNU GPL
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# -DNSUPERNODAL do not include the Supernodal module. License GNU GPL
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#
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# -DNPRINT do not print anything.
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# -D'LONGBLAS=long' or -DLONGBLAS='long long' defines the integers used by
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# LAPACK and the BLAS (defaults to 'int')
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# -DNSUNPERF for Solaris only. If defined, do not use the Sun
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# Performance Library
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CHOLMOD_CONFIG = $(GPU_CONFIG) -DNPARTITION
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# uncomment this line to compile CHOLMOD without METIS:
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# CHOLMOD_CONFIG = -DNPARTITION
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#------------------------------------------------------------------------------
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# SuiteSparseQR configuration:
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#------------------------------------------------------------------------------
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# The SuiteSparseQR library can be compiled with the following options:
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#
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# -DNPARTITION do not include the CHOLMOD partition module
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# -DNEXPERT do not include the functions in SuiteSparseQR_expert.cpp
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# -DHAVE_TBB enable the use of Intel's Threading Building Blocks (TBB)
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# default, without timing, without TBB:
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SPQR_CONFIG = $(GPU_CONFIG)
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# with TBB:
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# SPQR_CONFIG = -DHAVE_TBB
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# This is needed for IBM AIX: (but not for and C codes, just C++)
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# SPQR_CONFIG = -DBLAS_NO_UNDERSCORE
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# with TBB, you must select this:
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# TBB = -ltbb
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# without TBB:
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TBB =
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#------------------------------------------------------------------------------
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# code formatting
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#------------------------------------------------------------------------------
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# Use "grep" only, if you do not have "indent"
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# PRETTY = grep -v "^\#"
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# PRETTY = grep -v "^\#" | indent -bl -nce -ss -bli0 -i4 -sob -l120
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PRETTY = grep -v "^\#" | indent -bl -nce -bli0 -i4 -sob -l120
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#------------------------------------------------------------------------------
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# Linux
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#------------------------------------------------------------------------------
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# Using default compilers:
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# CC = gcc
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# CF = $(CFLAGS) -O3 -fexceptions
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# alternatives:
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# CF = $(CFLAGS) -g -fexceptions \
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# -Wall -W -Wshadow -Wmissing-prototypes -Wstrict-prototypes \
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# -Wredundant-decls -Wnested-externs -Wdisabled-optimization -ansi \
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# -funit-at-a-time
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# CF = $(CFLAGS) -O3 -fexceptions \
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# -Wall -W -Werror -Wshadow -Wmissing-prototypes -Wstrict-prototypes \
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# -Wredundant-decls -Wnested-externs -Wdisabled-optimization -ansi
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# CF = $(CFLAGS) -O3 -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
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# CF = $(CFLAGS) -O3
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# CF = $(CFLAGS) -O3 -g -fexceptions
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# CF = $(CFLAGS) -g -fexceptions \
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# -Wall -W -Wshadow \
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# -Wredundant-decls -Wdisabled-optimization -ansi
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# consider:
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# -fforce-addr -fmove-all-movables -freduce-all-givs -ftsp-ordering
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# -frename-registers -ffast-math -funroll-loops
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# Using the Goto BLAS:
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# BLAS = -lgoto -lfrtbegin -lg2c $(XERBLA) -lpthread
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# Using Intel's icc and ifort compilers:
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# (does not work for mexFunctions unless you add a mexopts.sh file)
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# F77 = ifort
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# CC = icc
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# CF = $(CFLAGS) -O3 -xN -vec_report=0
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# CF = $(CFLAGS) -g
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# 64bit:
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# F77FLAGS = -O -m64
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# CF = $(CFLAGS) -O3 -fexceptions -m64
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# BLAS = -lgoto64 -lfrtbegin -lg2c -lpthread $(XERBLA)
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# LAPACK = -llapack64
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||||
# SUSE Linux 10.1, AMD Opteron, with GOTO Blas
|
||||
# F77 = gfortran
|
||||
# BLAS = -lgoto_opteron64 -lgfortran
|
||||
|
||||
# SUSE Linux 10.1, Intel Pentium, with GOTO Blas
|
||||
# F77 = gfortran
|
||||
# BLAS = -lgoto -lgfortran
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
# Mac
|
||||
#------------------------------------------------------------------------------
|
||||
|
||||
# As recommended by macports, http://suitesparse.darwinports.com/
|
||||
# I've tested them myself on Mac OSX 10.6.1 and 10.6.8 (Snow Leopard),
|
||||
# on my MacBook Air, and they work fine.
|
||||
|
||||
# F77 = gfortran
|
||||
# CF = $(CFLAGS) -O3 -fno-common -fexceptions -DNTIMER
|
||||
# BLAS = -framework Accelerate
|
||||
# LAPACK = -framework Accelerate
|
||||
# LIB = -lm
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
# Solaris
|
||||
#------------------------------------------------------------------------------
|
||||
|
||||
# 32-bit
|
||||
# CF = $(CFLAGS) -KPIC -dalign -xc99=%none -Xc -xlibmieee -xO5 -xlibmil -m32
|
||||
|
||||
# 64-bit
|
||||
# CF = $(CFLAGS) -fast -KPIC -xc99=%none -xlibmieee -xlibmil -m64 -Xc
|
||||
|
||||
# FFLAGS = -fast -KPIC -dalign -xlibmil -m64
|
||||
|
||||
# The Sun Performance Library includes both LAPACK and the BLAS:
|
||||
# BLAS = -xlic_lib=sunperf
|
||||
# LAPACK =
|
||||
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
# Compaq Alpha
|
||||
#------------------------------------------------------------------------------
|
||||
|
||||
# 64-bit mode only
|
||||
# CF = $(CFLAGS) -O2 -std1
|
||||
# BLAS = -ldxml
|
||||
# LAPACK =
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
# IBM RS 6000
|
||||
#------------------------------------------------------------------------------
|
||||
|
||||
# BLAS = -lessl
|
||||
# LAPACK =
|
||||
|
||||
# 32-bit mode:
|
||||
# CF = $(CFLAGS) -O4 -qipa -qmaxmem=16384 -qproto
|
||||
# F77FLAGS = -O4 -qipa -qmaxmem=16384
|
||||
|
||||
# 64-bit mode:
|
||||
# CF = $(CFLAGS) -O4 -qipa -qmaxmem=16384 -q64 -qproto
|
||||
# F77FLAGS = -O4 -qipa -qmaxmem=16384 -q64
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
# SGI IRIX
|
||||
#------------------------------------------------------------------------------
|
||||
|
||||
# BLAS = -lscsl
|
||||
# LAPACK =
|
||||
|
||||
# 32-bit mode
|
||||
# CF = $(CFLAGS) -O
|
||||
|
||||
# 64-bit mode (32 bit int's and 64-bit long's):
|
||||
# CF = $(CFLAGS) -64
|
||||
# F77FLAGS = -64
|
||||
|
||||
# SGI doesn't have ranlib
|
||||
# RANLIB = echo
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
# AMD Opteron (64 bit)
|
||||
#------------------------------------------------------------------------------
|
||||
|
||||
# BLAS = -lgoto_opteron64 -lg2c
|
||||
# LAPACK = -llapack_opteron64
|
||||
|
||||
# SUSE Linux 10.1, AMD Opteron
|
||||
# F77 = gfortran
|
||||
# BLAS = -lgoto_opteron64 -lgfortran
|
||||
# LAPACK = -llapack_opteron64
|
||||
|
||||
#------------------------------------------------------------------------------
|
||||
# remove object files and profile output
|
||||
#------------------------------------------------------------------------------
|
||||
|
||||
CLEAN = *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno
|
||||
|
|
@ -15,7 +15,6 @@ stdenv.mkDerivation {
|
|||
};
|
||||
|
||||
preConfigure = ''
|
||||
substituteAllInPlace SuiteSparse_config/SuiteSparse_config.mk
|
||||
mkdir -p $out/lib
|
||||
mkdir -p $out/include
|
||||
|
||||
|
|
|
|||
Loading…
Reference in a new issue