Merge remote-tracking branch 'origin/master' into gcc-6

.github/CONTRIBUTING.md

@@ -15,7 +15,7 @@ under the terms of [COPYING](../COPYING), which is an MIT-like license.
 * Format the commits in the following way:
 
   ```
-  (pkg-name | service-name): (from -> to | init at version | refactor | etc)
+  (pkg-name | nixos/<module>): (from -> to | init at version | refactor | etc)
   
   (Motivation for change. Additional information.)
   ```
@@ -24,10 +24,10 @@ under the terms of [COPYING](../COPYING), which is an MIT-like license.
 
   * nginx: init at 2.0.1
   * firefox: 3.0 -> 3.1.1
-  * hydra service: add bazBaz option
+  * nixos/hydra: add bazBaz option
   
     Dual baz behavior is needed to do foo.
-  * nginx service: refactor config generation
+  * nixos/nginx: refactor config generation
     
     The old config generation system used impure shell scripts and could break in specific circumstances (see #1234).
 

.github/PULL_REQUEST_TEMPLATE.md

@@ -3,6 +3,8 @@
 
 ###### Things done
 
+Please check what applies. Note that these are not hard requirements but mereley serve as information for reviewers.
+
 - [ ] Tested using sandboxing
   ([nix.useSandbox](http://nixos.org/nixos/manual/options.html#opt-nix.useSandbox) on NixOS,
     or option `build-use-sandbox` in [`nix.conf`](http://nixos.org/nix/manual/#sec-conf-file)

nixos/modules/module-list.nix

@@ -287,6 +287,7 @@
   ./services/misc/emby.nix
   ./services/misc/errbot.nix
   ./services/misc/etcd.nix
+  ./services/misc/exhibitor.nix
   ./services/misc/felix.nix
   ./services/misc/folding-at-home.nix
   ./services/misc/fstrim.nix

nixos/modules/programs/zsh/oh-my-zsh.nix

@@ -15,6 +15,16 @@ in
           '';
         };
 
+        package = mkOption {
+          default = pkgs.oh-my-zsh;
+          defaultText = "pkgs.oh-my-zsh";
+          description = ''
+            Package to install for `oh-my-zsh` usage.
+          '';
+
+          type = types.package;
+        };
+
         plugins = mkOption {
           default = [];
           type = types.listOf(types.str);
@@ -46,11 +56,11 @@ in
       # Prevent zsh from overwriting oh-my-zsh's prompt
       programs.zsh.promptInit = mkDefault "";
 
-      environment.systemPackages = with pkgs; [ oh-my-zsh ];
+      environment.systemPackages = [ cfg.package ];
 
-      programs.zsh.interactiveShellInit = with pkgs; with builtins; ''
+      programs.zsh.interactiveShellInit = with builtins; ''
         # oh-my-zsh configuration generated by NixOS
-        export ZSH=${oh-my-zsh}/share/oh-my-zsh
+        export ZSH=${cfg.package}/share/oh-my-zsh
 
         ${optionalString (length(cfg.plugins) > 0)
           "plugins=(${concatStringsSep " " cfg.plugins})"

nixos/modules/services/misc/exhibitor.nix

@@ -0,0 +1,415 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+
+let
+  cfg = config.services.exhibitor;
+  exhibitor = cfg.package;
+  exhibitorConfig = ''
+    zookeeper-install-directory=${cfg.baseDir}/zookeeper
+    zookeeper-data-directory=${cfg.zkDataDir}
+    zookeeper-log-directory=${cfg.zkLogDir}
+    zoo-cfg-extra=${cfg.zkExtraCfg}
+    client-port=${toString cfg.zkClientPort}
+    connect-port=${toString cfg.zkConnectPort}
+    election-port=${toString cfg.zkElectionPort}
+    cleanup-period-ms=${toString cfg.zkCleanupPeriod}
+    servers-spec=${concatStringsSep "," cfg.zkServersSpec}
+    auto-manage-instances=${lib.boolToString cfg.autoManageInstances}
+    ${cfg.extraConf}
+  '';
+  configDir = pkgs.writeTextDir "exhibitor.properties" exhibitorConfig;
+  cliOptionsCommon = {
+    configtype = cfg.configType;
+    defaultconfig = "${configDir}/exhibitor.properties";
+    port = toString cfg.port;
+    hostname = cfg.hostname;
+    headingtext = if (cfg.headingText != null) then (lib.escapeShellArg cfg.headingText) else null;
+    nodemodification = lib.boolToString cfg.nodeModification;
+    configcheckms = toString cfg.configCheckMs;
+    jquerystyle = cfg.jqueryStyle;
+    loglines = toString cfg.logLines;
+    servo = lib.boolToString cfg.servo;
+    timeout = toString cfg.timeout;
+  };
+  s3CommonOptions = { s3region = cfg.s3Region; s3credentials = cfg.s3Credentials; };
+  cliOptionsPerConfig = {
+    s3 = {
+      s3config = "${cfg.s3Config.bucketName}:${cfg.s3Config.objectKey}";
+      s3configprefix = cfg.s3Config.configPrefix;
+    };
+    zookeeper = {
+      zkconfigconnect = concatStringsSep "," cfg.zkConfigConnect;
+      zkconfigexhibitorpath = cfg.zkConfigExhibitorPath;
+      zkconfigpollms = toString cfg.zkConfigPollMs;
+      zkconfigretry = "${toString cfg.zkConfigRetry.sleepMs}:${toString cfg.zkConfigRetry.retryQuantity}";
+      zkconfigzpath = cfg.zkConfigZPath;
+      zkconfigexhibitorport = toString cfg.zkConfigExhibitorPort; # NB: This might be null
+    };
+    file = {
+      fsconfigdir = cfg.fsConfigDir;
+      fsconfiglockprefix = cfg.fsConfigLockPrefix;
+      fsConfigName = fsConfigName;
+    };
+    none = {
+      noneconfigdir = configDir;
+    };
+  };
+  cliOptions = concatStringsSep " " (mapAttrsToList (k: v: "--${k} ${v}") (filterAttrs (k: v: v != null && v != "") (cliOptionsCommon //
+               cliOptionsPerConfig."${cfg.configType}" //
+               s3CommonOptions //
+               optionalAttrs cfg.s3Backup { s3backup = "true"; } //
+               optionalAttrs cfg.fileSystemBackup { filesystembackup = "true"; }
+               )));
+in
+{
+  options = {
+    services.exhibitor = {
+      enable = mkOption {
+        type = types.bool;
+        default = false;
+        description = "
+          Whether to enable the exhibitor server.
+        ";
+      };
+      # See https://github.com/soabase/exhibitor/wiki/Running-Exhibitor for what these mean
+      # General options for any type of config
+      port = mkOption {
+        type = types.int;
+        default = 8080;
+        description = ''
+          The port for exhibitor to listen on and communicate with other exhibitors.
+        '';
+      };
+      baseDir = mkOption {
+        type = types.str;
+        default = "/var/exhibitor";
+        description = ''
+          Baseline directory for exhibitor runtime config.
+        '';
+      };
+      configType = mkOption {
+        type = types.enum [ "file" "s3" "zookeeper" "none" ];
+        description = ''
+          Which configuration type you want to use. Additional config will be
+          required depending on which type you are using.
+        '';
+      };
+      hostname = mkOption {
+        type = types.nullOr types.str;
+        description = ''
+          Hostname to use and advertise
+        '';
+        default = null;
+      };
+      nodeModification = mkOption {
+        type = types.bool;
+        description = ''
+          Whether the Explorer UI will allow nodes to be modified (use with caution).
+        '';
+        default = true;
+      };
+      configCheckMs = mkOption {
+        type = types.int;
+        description = ''
+          Period (ms) to check for shared config updates.
+        '';
+        default = 30000;
+      };
+      headingText = mkOption {
+        type = types.nullOr types.str;
+        description = ''
+          Extra text to display in UI header
+        '';
+        default = null;
+      };
+      jqueryStyle = mkOption {
+        type = types.enum [ "red" "black" "custom" ];
+        description = ''
+          Styling used for the JQuery-based UI.
+        '';
+        default = "red";
+      };
+      logLines = mkOption {
+        type = types.int;
+        description = ''
+        Max lines of logging to keep in memory for display.
+        '';
+        default = 1000;
+      };
+      servo = mkOption {
+        type = types.bool;
+        description = ''
+          ZooKeeper will be queried once a minute for its state via the 'mntr' four
+          letter word (this requires ZooKeeper 3.4.x+). Servo will be used to publish
+          this data via JMX.
+        '';
+        default = false;
+      };
+      timeout = mkOption {
+        type = types.int;
+        description = ''
+          Connection timeout (ms) for ZK connections.
+        '';
+        default = 30000;
+      };
+      autoManageInstances = mkOption {
+        type = types.bool;
+        description = ''
+          Automatically manage ZooKeeper instances in the ensemble
+        '';
+        default = false;
+      };
+      zkDataDir = mkOption {
+        type = types.str;
+        default = "${cfg.baseDir}/zkData";
+        description = ''
+          The Zookeeper data directory
+        '';
+      };
+      zkLogDir = mkOption {
+        type = types.path;
+        default = "${cfg.baseDir}/zkLogs";
+        description = ''
+          The Zookeeper logs directory
+        '';
+      };
+      extraConf = mkOption {
+        type = types.str;
+        default = "";
+        description = ''
+          Extra Exhibitor configuration to put in the ZooKeeper config file.
+        '';
+      };
+      zkExtraCfg = mkOption {
+        type = types.str;
+        default = ''initLimit=5&syncLimit=2&tickTime=2000'';
+        description = ''
+          Extra options to pass into Zookeeper
+        '';
+      };
+      zkClientPort = mkOption {
+        type = types.int;
+        default = 2181;
+        description = ''
+          Zookeeper client port
+        '';
+      };
+      zkConnectPort = mkOption {
+        type = types.int;
+        default = 2888;
+        description = ''
+          The port to use for followers to talk to each other.
+        '';
+      };
+      zkElectionPort = mkOption {
+        type = types.int;
+        default = 3888;
+        description = ''
+          The port for Zookeepers to use for leader election.
+        '';
+      };
+      zkCleanupPeriod = mkOption {
+        type = types.int;
+        default = 0;
+        description = ''
+          How often (in milliseconds) to run the Zookeeper log cleanup task.
+        '';
+      };
+      zkServersSpec = mkOption {
+        type = types.listOf types.str;
+        default = [];
+        description = ''
+          Zookeeper server spec for all servers in the ensemble.
+        '';
+        example = [ "S:1:zk1.example.com" "S:2:zk2.example.com" "S:3:zk3.example.com" "O:4:zk-observer.example.com" ];
+      };
+
+      # Backup options
+      s3Backup = mkOption {
+        type = types.bool;
+        default = false;
+        description = ''
+          Whether to enable backups to S3
+        '';
+      };
+      fileSystemBackup = mkOption {
+        type = types.bool;
+        default = false;
+        description = ''
+          Enables file system backup of ZooKeeper log files
+        '';
+      };
+
+      # Options for using zookeeper configType
+      zkConfigConnect = mkOption {
+        type = types.listOf types.str;
+        description = ''
+          The initial connection string for ZooKeeper shared config storage
+        '';
+        example = ["host1:2181" "host2:2181"];
+      };
+      zkConfigExhibitorPath = mkOption {
+        type = types.string;
+        description = ''
+          If the ZooKeeper shared config is also running Exhibitor, the URI path for the REST call
+        '';
+        default = "/";
+      };
+      zkConfigExhibitorPort = mkOption {
+        type = types.nullOr types.int;
+        description = ''
+          If the ZooKeeper shared config is also running Exhibitor, the port that
+          Exhibitor is listening on. IMPORTANT: if this value is not set it implies
+          that Exhibitor is not being used on the ZooKeeper shared config.
+        '';
+      };
+      zkConfigPollMs = mkOption {
+        type = types.int;
+        description = ''
+          The period in ms to check for changes in the config ensemble
+        '';
+        default = 10000;
+      };
+      zkConfigRetry = {
+        sleepMs = mkOption {
+          type = types.int;
+          default = 1000;
+          description = ''
+            Retry sleep time connecting to the ZooKeeper config
+          '';
+        };
+        retryQuantity = mkOption {
+          type = types.int;
+          default = 3;
+          description = ''
+            Retries connecting to the ZooKeeper config
+          '';
+        };
+      };
+      zkConfigZPath = mkOption {
+        type = types.str;
+        description = ''
+          The base ZPath that Exhibitor should use
+        '';
+        example = "/exhibitor/config";
+      };
+
+      # Config options for s3 configType
+      s3Config = {
+        bucketName = mkOption {
+          type = types.str;
+          description = ''
+            Bucket name to store config
+          '';
+        };
+        objectKey = mkOption {
+          type = types.str;
+          description = ''
+            S3 key name to store the config
+          '';
+        };
+        configPrefix = mkOption {
+          type = types.str;
+          description = ''
+            When using AWS S3 shared config files, the prefix to use for values such as locks
+          '';
+          default = "exhibitor-";
+        };
+      };
+
+      # The next two are used for either s3backup or s3 configType
+      s3Credentials = mkOption {
+        type = types.nullOr types.path;
+        description = ''
+          Optional credentials to use for s3backup or s3config. Argument is the path
+          to an AWS credential properties file with two properties:
+          com.netflix.exhibitor.s3.access-key-id and com.netflix.exhibitor.s3.access-secret-key
+        '';
+        default = null;
+      };
+      s3Region = mkOption {
+        type = types.nullOr types.str;
+        description = ''
+          Optional region for S3 calls
+        '';
+        default = null;
+      };
+
+      # Config options for file config type
+      fsConfigDir = mkOption {
+        type = types.path;
+        description = ''
+          Directory to store Exhibitor properties (cannot be used with s3config).
+          Exhibitor uses file system locks so you can specify a shared location
+          so as to enable complete ensemble management.
+        '';
+      };
+      fsConfigLockPrefix = mkOption {
+        type = types.str;
+        description = ''
+          A prefix for a locking mechanism used in conjunction with fsconfigdir
+        '';
+        default = "exhibitor-lock-";
+      };
+      fsConfigName = mkOption {
+        type = types.str;
+        description = ''
+          The name of the file to store config in
+        '';
+        default = "exhibitor.properties";
+      };
+    };
+  };
+
+  config = mkIf cfg.enable {
+    systemd.services.exhibitor = {
+      description = "Exhibitor Daemon";
+      wantedBy = [ "multi-user.target" ];
+      after = [ "network.target" ];
+      environment = {
+        ZOO_LOG_DIR = cfg.baseDir;
+      };
+      serviceConfig = {
+        /***
+          Exhibitor is a bit un-nixy. It wants to present to you a user interface in order to
+          mutate the configuration of both itself and ZooKeeper, and to coordinate changes
+          among the members of the Zookeeper ensemble. I'm going for a different approach here,
+          which is to manage all the configuration via nix and have it write out the configuration
+          files that exhibitor will use, and to reduce the amount of inter-exhibitor orchestration.
+        ***/
+        ExecStart = ''
+          ${pkgs.exhibitor}/bin/startExhibitor.sh ${cliOptions}
+        '';
+        User = "zookeeper";
+        PermissionsStartOnly = true;
+      };
+      # This is a bit wonky, but the reason for this is that Exhibitor tries to write to
+      # ${cfg.baseDir}/zookeeper/bin/../conf/zoo.cfg
+      # I want everything but the conf directory to be in the immutable nix store, and I want defaults
+      # from the nix store
+      # If I symlink the bin directory in, then bin/../ will resolve to the parent of the symlink in the
+      # immutable nix store. Bind mounting a writable conf over the existing conf might work, but it gets very
+      # messy with trying to copy the existing out into a mutable store.
+      # Another option is to try to patch upstream exhibitor, but the current package just pulls down the
+      # prebuild JARs off of Maven, rather than building them ourselves, as Maven support in Nix isn't
+      # very mature. So, it seems like a reasonable compromise is to just copy out of the immutable store
+      # just before starting the service, so we're running binaries from the immutable store, but we work around
+      # Exhibitor's desire to mutate its current installation.
+      preStart = ''
+        mkdir -m 0700 -p ${cfg.baseDir}/zookeeper
+        # Not doing a chown -R to keep the base ZK files owned by root
+        chown zookeeper ${cfg.baseDir} ${cfg.baseDir}/zookeeper
+        cp -Rf ${pkgs.zookeeper}/* ${cfg.baseDir}/zookeeper
+        chown -R zookeeper ${cfg.baseDir}/zookeeper/conf
+        chmod -R u+w ${cfg.baseDir}/zookeeper/conf
+      '';
+    };
+    users.extraUsers = singleton {
+      name = "zookeeper";
+      uid = config.ids.uids.zookeeper;
+      description = "Zookeeper daemon user";
+      home = cfg.baseDir;
+    };
+  };
+}

nixos/modules/services/networking/coturn.nix

@@ -320,6 +320,14 @@ in {
         RuntimeDirectory = "turnserver";
         User = "turnserver";
         Group = "turnserver";
+        AmbientCapabilities =
+          mkIf (
+            cfg.listening-port < 1024 ||
+            cfg.alt-listening-port < 1024 ||
+            cfg.tls-listening-port < 1024 ||
+            cfg.alt-tls-listening-port < 1024 ||
+            cfg.min-port < 1024
+          ) "cap_net_bind_service";
         Restart = "on-abort";
       };
     };

nixos/modules/services/networking/wireguard.nix

@@ -208,7 +208,7 @@ let
             "${ipCommand} link set up dev ${name}"
 
             (map (peer: (map (ip:
-            "${ipCommand} route add ${ip} dev ${name}"
+            "${ipCommand} route replace ${ip} dev ${name}"
             ) peer.allowedIPs)) values.peers)
 
             values.postSetup

nixos/modules/virtualisation/docker.nix

@@ -100,8 +100,9 @@ in
         type = types.bool;
         default = false;
         description = ''
-          Whether to periodically prune Docker resources. If enabled, a systemd timer will run
-          <literal>docker system prune -f</literal> once a day.
+          Whether to periodically prune Docker resources. If enabled, a
+          systemd timer will run <literal>docker system prune -f</literal>
+          as specified by the <literal>dates</literal> option.
         '';
       };
 

pkgs/applications/audio/mpg123/default.nix

@@ -4,11 +4,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "mpg123-1.23.8";
+  name = "mpg123-1.25.4";
 
   src = fetchurl {
     url = "mirror://sourceforge/mpg123/${name}.tar.bz2";
-    sha256 = "13ngfzk84k4ks7ymanmq8f6707yrybra5h0mk3ir6mdnxk4068yy";
+    sha256 = "1rxknrnl3ji5hi5rbckpzhbl1k5r8i53kcys4xdgg0xbi8765dfd";
   };
 
   buildInputs = stdenv.lib.optional (!stdenv.isDarwin) alsaLib;

pkgs/applications/audio/spotify/default.nix

@@ -8,7 +8,8 @@ let
   # Please update the stable branch!
   # Latest version number can be found at:
   # http://repository-origin.spotify.com/pool/non-free/s/spotify-client/
-  version = "1.0.57.474.gca9c9538-30";
+  # Be careful not to pick the testing version.
+  version = "1.0.49.125.g72ee7853-111";
 
   deps = [
     alsaLib
@@ -53,7 +54,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "https://repository-origin.spotify.com/pool/non-free/s/spotify-client/spotify-client_${version}_amd64.deb";
-    sha256 = "fe46f2084c45c756bee366f744d2821d79e82866b19942e30bb2a20c1e597437";
+    sha256 = "0l008x06d257vcw6gq3q90hvv93cq6mxpj11by1np6bzzg61qv8x";
   };
 
   buildInputs = [ dpkg makeWrapper ];

pkgs/applications/editors/nano/default.nix

@@ -20,11 +20,11 @@ let
 
 in stdenv.mkDerivation rec {
   name = "nano-${version}";
-  version = "2.8.5";
+  version = "2.8.6";
 
   src = fetchurl {
     url = "mirror://gnu/nano/${name}.tar.xz";
-    sha256 = "1hl9gni3qmblr062a7w6vz16gvxbswgc5c19c923ja0bk48vyhyb";
+    sha256 = "0xjpm2ka56x5ycrgjh06v110na13xlbm42bs8qibk7g578m9cils";
   };
 
   nativeBuildInputs = [ texinfo ] ++ optional enableNls gettext;

pkgs/applications/editors/vscode/default.nix

@@ -2,7 +2,7 @@
   makeWrapper, libXScrnSaver, libxkbfile }:
 
 let
-  version = "1.14.0";
+  version = "1.14.2";
   channel = "stable";
 
   plat = {
@@ -12,9 +12,9 @@ let
   }.${stdenv.system};
 
   sha256 = {
-    "i686-linux" = "04xv9fr11j7k0yfb7aa2sdmq74hh43aarlvx8nxppzbn2k18dgb3";
-    "x86_64-linux" = "1m252cpj4pck40rxnrbp1wapn5d4grn15x7d3s059xb965kga4k7";
-    "x86_64-darwin" = "1hwjdrnrhvrmwbq935k4scgw68x817ms89gy471afbhpl65xmp8n";
+    "i686-linux" = "0ladqwgy37imq957mmbdfslaxcnx8gcl9nb1q5p8r91vldvf31zd";
+    "x86_64-linux" = "1nb9n6511v2p1nwcwh6kbpxgydfs66yn7q2nf1rmh42ha5yzqkja";
+    "x86_64-darwin" = "0yk2yd8rzhmsh276xfgywp1gjjkvxypgnjhs8jaxvrgsj7aw1s39";
   }.${stdenv.system};
 
   archive_fmt = if stdenv.system == "x86_64-darwin" then "zip" else "tar.gz";

pkgs/applications/misc/gnss-sdr/default.nix

@@ -0,0 +1,67 @@
+{ stdenv, fetchFromGitHub
+, armadillo
+, boost
+, cmake
+, glog
+, gmock
+, openssl
+, google-gflags
+, gnuradio
+, orc
+, pkgconfig
+, pythonPackages
+, uhd
+}:
+
+stdenv.mkDerivation rec {
+  name = "gnss-sdr-${version}";
+  version = "0.0.9";
+
+  src = fetchFromGitHub {
+    owner = "gnss-sdr";
+    repo = "gnss-sdr";
+    rev = "v${version}";
+    sha256 = "0gis932ly3vk7d5qvznffp54pkmbw3m6v60mxjfdj5dd3r7vf975";
+  };
+
+  buildInputs = [
+    armadillo
+    boost.dev
+    cmake
+    glog
+    gmock
+    openssl.dev
+    google-gflags
+    gnuradio
+    orc
+    pkgconfig
+    pythonPackages.Mako
+
+    # UHD support is optional, but gnuradio is built with it, so there's
+    # nothing to be gained by leaving it out.
+    uhd
+  ];
+
+  enableParallelBuilding = true;
+
+  cmakeFlags = [
+    "-DGFlags_ROOT_DIR=${google-gflags}/lib"
+    "-DGLOG_INCLUDE_DIR=${glog}/include"
+
+    # gnss-sdr doesn't truly depend on BLAS or LAPACK, as long as
+    # armadillo is built using both, so skip checking for them.
+    "-DBLAS=YES"
+    "-DLAPACK=YES"
+
+    # Similarly, it doesn't actually use gfortran despite checking for
+    # its presence.
+    "-DGFORTRAN=YES"
+  ];
+
+  meta = with stdenv.lib; {
+    description = "An open source Global Navigation Satellite Systems software-defined receiver";
+    homepage = http://gnss-sdr.org/;
+    license = licenses.gpl3Plus;
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/misc/gpsbabel/default.nix

@@ -1,14 +1,14 @@
-{ lib, stdenv, fetchurl, fetchpatch, zlib, qt4, which, IOKit }:
+{ lib, stdenv, fetchFromGitHub, fetchpatch, zlib, which, IOKit, qtbase }:
 
 stdenv.mkDerivation rec {
   name = "gpsbabel-${version}";
-  version = "1.5.3";
+  version = "1.5.4";
 
-  src = fetchurl {
-    # gpgbabel.org makes it hard to get the source tarball automatically, so
-    # get it from elsewhere.
-    url = "mirror://debian/pool/main/g/gpsbabel/gpsbabel_${version}.orig.tar.gz";
-    sha256 = "0l6c8911f7i5bbdzah9irhqf127ib0b7lv53rb8r9z8g439mznq1";
+  src = fetchFromGitHub {
+    owner = "gpsbabel";
+    repo = "gpsbabel";
+    rev = "gpsbabel_${lib.replaceStrings ["."] ["_"] version}";
+    sha256 = "0v6wpp14zkfbarmksf9dn3wmpj1araxd7xi5xp7gpl7kafb9aiwi";
   };
 
   patches = [
@@ -19,7 +19,7 @@ stdenv.mkDerivation rec {
     })
   ];
 
-  buildInputs = [ zlib qt4 which ]
+  buildInputs = [ zlib qtbase which ]
     ++ lib.optionals stdenv.isDarwin [ IOKit ];
 
   /* FIXME: Building the documentation, with "make doc", requires this:

pkgs/applications/misc/houdini/default.nix

@@ -1,10 +1,9 @@
 { zsh, stdenv, callPackage, buildFHSUserEnv, undaemonize }:
 
 let
-  version = "16.0.633";
   houdini-runtime = callPackage ./runtime.nix { };
 in buildFHSUserEnv rec {
-  name = "houdini-${version}";
+  name = "houdini-${houdini-runtime.version}";
 
   extraBuildCommands = ''
     mkdir -p $out/usr/lib/sesi

pkgs/applications/misc/houdini/runtime.nix

@@ -1,4 +1,4 @@
-{ stdenv, requireFile, zlib, libpng, libSM, libICE, fontconfig, xorg, mesa_glu, bc }:
+{ stdenv, requireFile, zlib, libpng, libSM, libICE, fontconfig, xorg, mesa_glu, alsaLib, dbus, xkeyboardconfig, bc }:
 
 let
   ld_library_path = builtins.concatStringsSep ":" [
@@ -11,21 +11,29 @@ let
       xorg.libXext
       xorg.libX11
       xorg.libXrender
+      xorg.libXcursor
+      xorg.libXfixes
+      xorg.libXrender
+      xorg.libXcomposite
+      xorg.libXdamage
+      xorg.libXtst
+      alsaLib
       fontconfig
       libSM
       libICE
       zlib
       libpng
+      dbus
     ])
   ];
   license_dir = "~/.config/houdini";
 in
 stdenv.mkDerivation rec {
-  version = "16.0.633";
+  version = "16.0.671";
   name = "houdini-runtime-${version}";
   src = requireFile rec {
-    name = "houdini-16.0.633-linux_x86_64_gcc4.8.tar.gz";
-    sha256 = "1laxncwgsr4hj53bn4pn9ibv3pkrpliwxlx0558wgnhq42js3wvl";
+    name = "houdini-${version}-linux_x86_64_gcc4.8.tar.gz";
+    sha256 = "1d3c1a1128szlgaf3ilw5y20plz5azwp37v0ljawgm80y64hq15r";
     message = ''
       This nix expression requires that ${name} is already part of the store.
       Download it from https://sidefx.com and add it to the nix store with:
@@ -50,11 +58,13 @@ stdenv.mkDerivation rec {
                       --no-root-check \
                       --accept-EULA \
                       $out
-    sed -i "s|/usr/lib/sesi|${license_dir}|g" $out/houdini/Licensing.opt
+    echo -e "localValidatorDir = ${license_dir}\nlicensingMode = localValidator" > $out/houdini/Licensing.opt
     sed -i "s|/usr/lib/sesi|${license_dir}|g" $out/houdini/sbin/sesinetd_safe
     sed -i "s|/usr/lib/sesi|${license_dir}|g" $out/houdini/sbin/sesinetd.startup
     echo "export LD_LIBRARY_PATH=${ld_library_path}" >> $out/bin/app_init.sh
+    echo "export QT_XKB_CONFIG_ROOT="${xkeyboardconfig}/share/X11/xkb"" >> $out/bin/app_init.sh
     echo "export LD_LIBRARY_PATH=${ld_library_path}" >> $out/houdini/sbin/app_init.sh
+    echo "export QT_XKB_CONFIG_ROOT="${xkeyboardconfig}/share/X11/xkb"" >> $out/houdini/sbin/app_init.sh
   '';
   postFixup = ''
     INTERPRETER="$(cat "$NIX_CC"/nix-support/dynamic-linker)"

pkgs/applications/misc/mediainfo-gui/default.nix

@@ -2,11 +2,11 @@
 , desktop_file_utils, libSM, imagemagick }:
 
 stdenv.mkDerivation rec {
-  version = "0.7.95";
+  version = "0.7.97";
   name = "mediainfo-gui-${version}";
   src = fetchurl {
     url = "http://mediaarea.net/download/source/mediainfo/${version}/mediainfo_${version}.tar.xz";
-    sha256 = "0bil5hsjas585s83j0srxwlplzpw2wny2wklp8az8iayvxmmi20m";
+    sha256 = "10hp23a9hdlqvrhskssd9g15f4n55yq48cmbpjwdqwzfrblj598n";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];

pkgs/applications/misc/mediainfo/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl, autoreconfHook, pkgconfig, libzen, libmediainfo, zlib }:
 
 stdenv.mkDerivation rec {
-  version = "0.7.95";
+  version = "0.7.97";
   name = "mediainfo-${version}";
   src = fetchurl {
     url = "http://mediaarea.net/download/source/mediainfo/${version}/mediainfo_${version}.tar.xz";
-    sha256 = "0bil5hsjas585s83j0srxwlplzpw2wny2wklp8az8iayvxmmi20m";
+    sha256 = "10hp23a9hdlqvrhskssd9g15f4n55yq48cmbpjwdqwzfrblj598n";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];

pkgs/applications/networking/owncloud-client/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "owncloud-client-${version}";
-  version = "2.3.1";
+  version = "2.3.2";
 
   src = fetchurl {
     url = "https://download.owncloud.com/desktop/stable/owncloudclient-${version}.tar.xz";
-    sha256 = "051rky4rpm73flxxkhfdxqq23ncnk4ixhscbg74w82sa4d93f54k";
+    sha256 = "02az9wq0d1vsgcdipddipdjwj2faf7jag8hizwd0ha3sjlmrs6d1";
   };
 
   nativeBuildInputs = [ pkgconfig cmake ];

pkgs/applications/networking/sync/rclone/default.nix

@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "rclone-${version}";
-  version = "1.36";
+  version = "1.37";
 
   goPackagePath = "github.com/ncw/rclone";
 
@@ -10,9 +10,15 @@ buildGoPackage rec {
     owner = "ncw";
     repo = "rclone";
     rev = "v${version}";
-    sha256 = "1vx75ihg2j0chml8hwvngjkjw647cai9gicfy8ss6xsrm46w59b3";
+    sha256 = "0krmdwzl4c68vxpbycqy2xba8vvqbka7xh3k2q6ldxsd8y2rypym";
   };
 
+  outputs = [ "bin" "out" "man" ];
+
+  postInstall = ''
+    install -D -m644 $src/rclone.1 $man/share/man/man1/rclone.1
+  '';
+
   meta = with stdenv.lib; {
     description = "Command line program to sync files and directories to and from major cloud storage";
     homepage = "http://rclone.org";

pkgs/applications/science/logic/cryptominisat/default.nix

@@ -1,18 +1,17 @@
-{ stdenv, fetchFromGitHub, fetchpatch, cmake, python, vim }:
+{ stdenv, fetchFromGitHub, fetchpatch, cmake, python, xxd }:
 
 stdenv.mkDerivation rec {
   name = "cryptominisat-${version}";
   version = "5.0.1";
 
   src = fetchFromGitHub {
-    owner = "msoos";
-    repo = "cryptominisat";
-    rev = version;
+    owner  = "msoos";
+    repo   = "cryptominisat";
+    rev    = version;
     sha256 = "0cpw5d9vplxvv3aaplhnga55gz1hy29p7s4pkw1306knkbhlzvkb";
   };
 
-  # vim for xxd binary
-  buildInputs = [ python vim ];
+  buildInputs = [ python xxd ];
   nativeBuildInputs = [ cmake ];
 
   patches = [(fetchpatch rec {
@@ -23,9 +22,9 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "An advanced SAT Solver";
+    homepage    = https://github.com/msoos/cryptominisat;
+    license     = licenses.mit;
     maintainers = with maintainers; [ mic92 ];
-    platforms = platforms.unix;
-    license = licenses.mit;
-    homepage = https://github.com/msoos/cryptominisat;
+    platforms   = platforms.unix;
   };
 }

pkgs/applications/version-management/blackbox/default.nix

@@ -0,0 +1,25 @@
+{ stdenv, fetchFromGitHub }:
+
+stdenv.mkDerivation rec {
+  version = "1.20170611";
+  pname   = "blackbox";
+  name    = "${pname}-${version}";
+
+  src = fetchFromGitHub {
+    owner  = "stackexchange";
+    repo   = pname;
+    rev    = "v${version}";
+    sha256 = "1jnzhlj54c0szw9l9wib07i2375pbm402bx9wagspcmwc0qw43p6";
+  };
+
+  installPhase = ''
+    mkdir -p $out/bin && cp -r bin/* $out/bin
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Safely store secrets in a VCS repo";
+    maintainers = with maintainers; [ ericsagnes ];
+    license     = licenses.mit;
+    platforms   = platforms.all;
+  };
+}

pkgs/applications/video/mpv/default.nix

@@ -33,6 +33,7 @@
 , vaapiSupport       ? true,  libva         ? null
 , drmSupport         ? !stdenv.isDarwin,  libdrm        ? null
 , vapoursynthSupport ? false, vapoursynth   ? null
+, archiveSupport     ? false, libarchive    ? null
 , jackaudioSupport   ? false, libjack2      ? null
 
 # scripts you want to be loaded by default
@@ -65,6 +66,7 @@ assert libpngSupport      -> available libpng;
 assert youtubeSupport     -> available youtube-dl;
 assert vapoursynthSupport -> available vapoursynth;
 assert jackaudioSupport   -> available libjack2;
+assert archiveSupport     -> available libarchive;
 assert vaapiSupport       -> available libva;
 assert drmSupport         -> available libdrm;
 
@@ -79,13 +81,13 @@ let
   };
 in stdenv.mkDerivation rec {
   name = "mpv-${version}";
-  version = "0.25.0";
+  version = "0.26.0";
 
   src = fetchFromGitHub {
     owner = "mpv-player";
     repo  = "mpv";
     rev    = "v${version}";
-    sha256 = "16r3fyq472hzxnh6g3gm520pmw1ybslaki3pqjm2d9jnd2md1pa5";
+    sha256 = "0d9pvsknjqmxj907y85fxh9xcbb5dafw2bh7rpwhgs9x4wdrbvv0";
   };
 
   patchPhase = ''
@@ -101,6 +103,9 @@ in stdenv.mkDerivation rec {
     "--disable-libmpv-static"
     "--disable-static-build"
     "--disable-build-date" # Purity
+    (enableFeature archiveSupport "libarchive")
+    (enableFeature dvdreadSupport "dvdread")
+    (enableFeature dvdnavSupport "dvdnav")
     (enableFeature vaapiSupport "vaapi")
     (enableFeature waylandSupport "wayland")
   ];
@@ -136,6 +141,7 @@ in stdenv.mkDerivation rec {
     ++ optional vaapiSupport       libva
     ++ optional drmSupport         libdrm
     ++ optional vapoursynthSupport vapoursynth
+    ++ optional archiveSupport     libarchive
     ++ optionals dvdnavSupport     [ libdvdnav libdvdnav.libdvdread ]
     ++ optionals x11Support        [ libX11 libXext mesa libXxf86vm ]
     ++ optionals waylandSupport    [ wayland libxkbcommon ];
@@ -154,7 +160,7 @@ in stdenv.mkDerivation rec {
     ln -s ${freefont_ttf}/share/fonts/truetype/FreeSans.ttf $out/share/mpv/subfont.ttf
     # Ensure youtube-dl is available in $PATH for MPV
     wrapProgram $out/bin/mpv \
-      --add-flags "--script=${concatStringsSep "," scripts}" \
+      --add-flags "--scripts=${concatStringsSep "," scripts}" \
   '' + optionalString youtubeSupport ''
       --prefix PATH : "${youtube-dl}/bin" \
   '' + optionalString vapoursynthSupport ''

pkgs/applications/window-managers/jwm/default.nix

@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   name = "jwm-${version}";
-  version = "1594";
+  version = "1600";
   
   src = fetchFromGitHub {
     owner = "joewing";
     repo = "jwm";
     rev = "s${version}";
-    sha256 = "1608ws3867xipcbdl2gw6ybcxzk14vq24sr62m9l65m4g4m3wbd2";
+    sha256 = "0rfb67r6g873alvcbn9531415qlfmvfrdfm4xrsyhdgdwj7dv5kv";
   };
 
   nativeBuildInputs = [ pkgconfig automake autoconf libtool gettext which ];

pkgs/build-support/cc-wrapper/default.nix

@@ -275,9 +275,9 @@ stdenv.mkDerivation {
       # Propagate the wrapped cc so that if you install the wrapper,
       # you get tools like gcov, the manpages, etc. as well (including
       # for binutils and Glibc).
-      printLines ${cc} ${cc.man or ""} ${binutils_bin} ${if libc == null then "" else libc_bin} > $out/nix-support/propagated-user-env-packages
+      echo ${cc} ${cc.man or ""} ${binutils_bin} ${if libc == null then "" else libc_bin} > $out/nix-support/propagated-user-env-packages
 
-      printLines ${toString extraPackages} > $out/nix-support/propagated-native-build-inputs
+      echo ${toString extraPackages} > $out/nix-support/propagated-native-build-inputs
     ''
 
     + optionalString (targetPlatform.isSunOS && nativePrefix != "") ''

pkgs/build-support/gcc-wrapper-old/builder.sh

@@ -211,5 +211,5 @@ cp -p $utils $out/nix-support/utils.sh
 # tools like gcov, the manpages, etc. as well (including for binutils
 # and Glibc).
 if test -z "$nativeTools"; then
-    printLines $gcc $binutils $libc $libc_bin > $out/nix-support/propagated-user-env-packages
+    echo $gcc $binutils $libc $libc_bin > $out/nix-support/propagated-user-env-packages
 fi

pkgs/build-support/setup-hooks/multiple-outputs.sh

@@ -202,7 +202,7 @@ _multioutPropagateDev() {
 
     mkdir -p "${!propagaterOutput}"/nix-support
     for output in $propagatedBuildOutputs; do
-        echo "${!output}" >> "${!propagaterOutput}"/nix-support/$propagatedBuildInputsFile
+        echo -n " ${!output}" >> "${!propagaterOutput}"/nix-support/$propagatedBuildInputsFile
     done
 }
 

pkgs/build-support/trivial-builders.nix

@@ -84,7 +84,7 @@ rec {
         mkdir -p $out/nix-support
         cp ${script} $out/nix-support/setup-hook
       '' + lib.optionalString (deps != []) ''
-        printLines ${toString deps} > $out/nix-support/propagated-native-build-inputs
+        echo ${toString deps} > $out/nix-support/propagated-native-build-inputs
       '' + lib.optionalString (substitutions != {}) ''
         substituteAll ${script} $out/nix-support/setup-hook
       '');

pkgs/desktops/kde-4.14/kde-package/default.nix

@@ -86,7 +86,7 @@ rec {
        };})
         ''
           mkdir -pv $out/nix-support
-          printLines ${toString list} | tee $out/nix-support/propagated-user-env-packages
+          echo "${toString list}" | tee $out/nix-support/propagated-user-env-packages
         '';
 
   # Given manifest module data, return the module

pkgs/development/compilers/ghc/8.2.1.nix

@@ -9,8 +9,8 @@
 
 let
   inherit (bootPkgs) ghc;
-  version = "8.2.1-rc3";
-  preReleaseName = "ghc-8.2.0.20170704";
+  version = "8.2.1";
+  preReleaseName = "ghc-8.2.1";
   commonBuildInputs = [ alex autoconf automake ghc happy hscolour perl python3 sphinx ];
   commonPreConfigure =  ''
     sed -i -e 's|-isysroot /Developer/SDKs/MacOSX10.5.sdk||' configure
@@ -27,7 +27,7 @@ in stdenv.mkDerivation (rec {
 
   src = fetchurl {
     url = "https://downloads.haskell.org/~ghc/${version}/${preReleaseName}-src.tar.xz";
-    sha256 = "0ccfybbjrmd8yzqbfdqvb6clz2kd005wi8sx3mfjmbkmxv0l4jry";
+    sha256 = "1w4k0n23b9fg8kmarqhfamzpmf91p6jcdr6xlwzfmb4df2bd9hng";
   };
 
   postPatch = "patchShebangs .";

pkgs/development/compilers/nim/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "nim-${version}";
-  version = "0.16.0";
+  version = "0.17.0";
 
   src = fetchurl {
     url = "http://nim-lang.org/download/${name}.tar.xz";
-    sha256 = "0rsibhkc5n548bn9yyb9ycrdgaph5kq84sfxc9gabjs7pqirh6cy";
+    sha256 = "16vsmk4rqnkg9lc9h9jk62ps0x778cdqg6qrs3k6fv2g73cqvq9n";
   };
 
   doCheck = true;

pkgs/development/compilers/openjdk-darwin/8.nix

@@ -33,7 +33,7 @@ let
       # any package that depends on the JRE has $CLASSPATH set up
       # properly.
       mkdir -p $out/nix-support
-      printLines ${setJavaClassPath} > $out/nix-support/propagated-native-build-inputs
+      echo -n "${setJavaClassPath}" > $out/nix-support/propagated-native-build-inputs
 
       install_name_tool -change /usr/X11/lib/libfreetype.6.dylib ${freetype}/lib/libfreetype.6.dylib $out/jre/lib/libfontmanager.dylib
 

pkgs/development/compilers/openjdk-darwin/default.nix

@@ -23,7 +23,7 @@ let
       # any package that depends on the JRE has $CLASSPATH set up
       # properly.
       mkdir -p $out/nix-support
-      printLines ${setJavaClassPath} > $out/nix-support/propagated-native-build-inputs
+      echo -n "${setJavaClassPath}" > $out/nix-support/propagated-native-build-inputs
 
       install_name_tool -change /usr/X11/lib/libfreetype.6.dylib ${freetype}/lib/libfreetype.6.dylib $out/jre/lib/libfontmanager.dylib
 

pkgs/development/compilers/openjdk/7.nix

@@ -190,7 +190,7 @@ let
       # any package that depends on the JRE has $CLASSPATH set up
       # properly.
       mkdir -p $jre/nix-support
-      printLines ${setJavaClassPath} > $jre/nix-support/propagated-native-build-inputs
+      echo -n "${setJavaClassPath}" > $jre/nix-support/propagated-native-build-inputs
 
       # Set JAVA_HOME automatically.
       mkdir -p $out/nix-support

pkgs/development/compilers/openjdk/8.nix

@@ -202,7 +202,7 @@ let
       # any package that depends on the JRE has $CLASSPATH set up
       # properly.
       mkdir -p $jre/nix-support
-      printLines ${setJavaClassPath} > $jre/nix-support/propagated-native-build-inputs
+      echo -n "${setJavaClassPath}" > $jre/nix-support/propagated-native-build-inputs
 
       # Set JAVA_HOME automatically.
       mkdir -p $out/nix-support

pkgs/development/compilers/oraclejdk/jdk-linux-base.nix

@@ -165,7 +165,7 @@ let result = stdenv.mkDerivation rec {
     ln -s $jrePath/lib/${architecture}/libnpjp2.so $jrePath/lib/${architecture}/plugins
 
     mkdir -p $out/nix-support
-    printLines ${setJavaClassPath} > $out/nix-support/propagated-native-build-inputs
+    echo -n "${setJavaClassPath}" > $out/nix-support/propagated-native-build-inputs
 
     # Set JAVA_HOME automatically.
     cat <<EOF >> $out/nix-support/setup-hook

pkgs/development/compilers/oraclejdk/jdk8cpu-linux.nix

@@ -1,9 +1,9 @@
 import ./jdk-linux-base.nix {
   productVersion = "8";
-  patchVersion = "131";
+  patchVersion = "141";
   downloadUrl = http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html;
-  sha256_i686 = "0m3i1n1im1nlwb06wlsdajv19cd3zhrjkw8zbyjfznydn6qs4s80";
-  sha256_x86_64 = "0dhj623ya01glcl3iir9ajifcrf6awhvpk936x9cxfj8zfyibck2";
+  sha256_i686 = "0jq8zq7hgjqbza1wmc1s8r4iz1r1s631snacn29wdsb5i2yg4qk5";
+  sha256_x86_64 = "0kxs765dra47cw39xmifmxrib49j1lfya5cc3kldfv7azcc54784";
   sha256_armv7l = "0ja97nqn4x0ji16c7r6i9nnnj3745br7qlbj97jg1s8m2wk7f9jd";
   jceName = "jce_policy-8.zip";
   jceDownloadUrl = http://www.oracle.com/technetwork/java/javase/downloads/jce8-download-2133166.html;

pkgs/development/compilers/oraclejdk/jdk8psu-linux.nix

@@ -1,9 +1,9 @@
 import ./jdk-linux-base.nix {
   productVersion = "8";
-  patchVersion = "131";
+  patchVersion = "141";
   downloadUrl = http://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html;
-  sha256_i686 = "0m3i1n1im1nlwb06wlsdajv19cd3zhrjkw8zbyjfznydn6qs4s80";
-  sha256_x86_64 = "0dhj623ya01glcl3iir9ajifcrf6awhvpk936x9cxfj8zfyibck2";
+  sha256_i686 = "0jq8zq7hgjqbza1wmc1s8r4iz1r1s631snacn29wdsb5i2yg4qk5";
+  sha256_x86_64 = "0kxs765dra47cw39xmifmxrib49j1lfya5cc3kldfv7azcc54784";
   sha256_armv7l = "0ja97nqn4x0ji16c7r6i9nnnj3745br7qlbj97jg1s8m2wk7f9jd";
   jceName = "jce_policy-8.zip";
   jceDownloadUrl = http://www.oracle.com/technetwork/java/javase/downloads/jce8-download-2133166.html;

pkgs/development/compilers/owl-lisp/default.nix

@@ -0,0 +1,31 @@
+{ stdenv, fetchFromGitHub, coreutils }:
+
+stdenv.mkDerivation rec {
+  name    = "owl-lisp-${version}";
+  version = "0.1.14";
+
+  src = fetchFromGitHub {
+    owner  = "aoh";
+    repo   = "owl-lisp";
+    rev    = "v${version}";
+    sha256 = "1rr0icprna3zs834q1pj4xy21cql3pcfknfkqipq01rhnl2893sz";
+  };
+
+  prePatch = ''
+    substituteInPlace Makefile --replace /usr $out
+
+    for f in tests/run tests/exec.sh ; do
+      substituteInPlace $f --replace /bin/echo ${coreutils}/bin/echo
+    done
+  '';
+
+  # tests are already run as part of the compilation process
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    descripton  = "A functional lisp";
+    homepage    = https://github.com/aoh/owl-lisp;
+    license     = licenses.mit;
+    maintainers = with maintainers; [ peterhoeg ];
+  };
+}

pkgs/development/compilers/zulu/default.nix

@@ -54,7 +54,7 @@ in stdenv.mkDerivation rec {
     find $out -name "*.so" -exec patchelf --set-rpath "$rpath" {} \;
 
     mkdir -p $out/nix-support
-    printLines ${setJavaClassPath} > $out/nix-support/propagated-native-build-inputs
+    echo -n "${setJavaClassPath}" > $out/nix-support/propagated-native-build-inputs
 
     # Set JAVA_HOME automatically.
     cat <<EOF >> $out/nix-support/setup-hook

pkgs/development/haskell-modules/generic-builder.nix

@@ -311,7 +311,7 @@ stdenv.mkDerivation ({
     ${optionalString isGhcjs ''
       for exeDir in "$out/bin/"*.jsexe; do
         exe="''${exeDir%.jsexe}"
-        printLines '#!${nodejs}/bin/node' > "$exe"
+        printf '%s\n' '#!${nodejs}/bin/node' > "$exe"
         cat "$exeDir/all.js" >> "$exe"
         chmod +x "$exe"
       done

pkgs/development/libraries/armadillo/default.nix

@@ -12,9 +12,14 @@ stdenv.mkDerivation rec {
   nativeBuildInputs = [ cmake ];
   buildInputs = [ openblasCompat superlu hdf5 ];
 
-  cmakeFlags = [ "-DDETECT_HDF5=ON" ];
+  cmakeFlags = let
+    libSuff = if stdenv.isDarwin then "dylib" else "so";
+  in [
+    "-DLAPACK_LIBRARY=${openblasCompat}/lib/libopenblas.${libSuff}"
+    "-DDETECT_HDF5=ON"
+  ];
 
- patches = [ ./use-unix-config-on-OS-X.patch ];
+  patches = [ ./use-unix-config-on-OS-X.patch ];
 
   meta = with stdenv.lib; {
     description = "C++ linear algebra library";

pkgs/development/libraries/c-ares/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "c-ares-1.12.0";
+  name = "c-ares-1.13.0";
 
   src = fetchurl {
     url = "http://c-ares.haxx.se/download/${name}.tar.gz";
-    sha256 = "1yv5ygkd813glz8hbagykgp1hlb6450chig061hr7pyw7i0gk4l6";
+    sha256 = "19qxhv9aiw903fr808y77r6l9js0fq9m3gcaqckan9jan7qhixq3";
   };
 
   meta = with stdenv.lib; {

pkgs/development/libraries/libextractor/default.nix

@@ -7,11 +7,11 @@ assert gtkSupport -> glib != null && gtk3 != null;
 assert videoSupport -> ffmpeg != null && libmpeg2 != null;
 
 stdenv.mkDerivation rec {
-  name = "libextractor-1.3";
+  name = "libextractor-1.4";
 
   src = fetchurl {
     url = "mirror://gnu/libextractor/${name}.tar.gz";
-    sha256 = "0zvv7wd011npcx7yphw9bpgivyxz6mlp87a57n96nv85k96dd2l6";
+    sha256 = "0v7ns5jhsyp1wzvbaydfgxnva5zd63gkzm9djhckmam9liq824l4";
   };
 
   preConfigure =

pkgs/development/libraries/libmediainfo/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl, autoreconfHook, pkgconfig, libzen, zlib }:
 
 stdenv.mkDerivation rec {
-  version = "0.7.95";
+  version = "0.7.97";
   name = "libmediainfo-${version}";
   src = fetchurl {
     url = "http://mediaarea.net/download/source/libmediainfo/${version}/libmediainfo_${version}.tar.xz";
-    sha256 = "0snrcashc5c5gcwvfh7sl7z4h523d8vxbfin3gb6g81zv43d2b23";
+    sha256 = "0rpxxbszi7i4hspdzdif9inhlwxdkf0iggaim6682clqb6pv7sld";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];

pkgs/development/libraries/libzen/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl, autoreconfHook }:
 
 stdenv.mkDerivation rec {
-  version = "0.4.34";
+  version = "0.4.35";
   name = "libzen-${version}";
   src = fetchurl {
     url = "https://mediaarea.net/download/source/libzen/${version}/libzen_${version}.tar.bz2";
-    sha256 = "02krmhl6dplidz6h251ajpzzdhzzm0hp0lwwv9rgn55xjgh4yxw3";
+    sha256 = "12a1icgcffgv503ii2k1453kxg5hfly09mf4zjcc80aq8a6rf8by";
   };
 
   nativeBuildInputs = [ autoreconfHook ];

pkgs/development/python-modules/arrow/default.nix

@@ -0,0 +1,27 @@
+{ stdenv, buildPythonPackage, fetchPypi
+, nose, chai, simplejson
+, dateutil }:
+
+buildPythonPackage rec {
+  name = "${pname}-${version}";
+  pname = "arrow";
+  version = "0.10.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "08n7q2l69hlainds1byd4lxhwrq7zsw7s640zkqc3bs5jkq0cnc0";
+  };
+
+  checkPhase = ''
+    nosetests --cover-package=arrow
+  '';
+
+  buildInputs = [ nose chai simplejson ];
+  propagatedBuildInputs = [ dateutil ];
+
+  meta = with stdenv.lib; {
+    description = "Python library for date manipulation";
+    license     = "apache";
+    maintainers = with maintainers; [ thoughtpolice ];
+  };
+}

pkgs/development/tools/sauce-connect/default.nix

@@ -4,18 +4,18 @@ with lib;
 
 stdenv.mkDerivation rec {
   name = "sauce-connect-${version}";
-  version = "4.4.7";
+  version = "4.4.8";
 
   src = fetchurl (
     if stdenv.system == "x86_64-linux" then {
       url = "https://saucelabs.com/downloads/sc-${version}-linux.tar.gz";
-      sha256 = "0n7x9mvv6sww0h77k3d8rms78vah0j48ndsv4vnxq9znwjiglmva";
+      sha256 = "1y6jmz0kdaz1fq9sirwxznzw52if6ypd0dp9mk7dkpipy0bx7pz6";
     } else if stdenv.system == "i686-linux" then {
       url = "https://saucelabs.com/downloads/sc-${version}-linux32.tar.gz";
-      sha256 = "1vwp8iqc5sk5kf7r86dld4767w4sm36hympnh1n2qza57ni7vy0g";
+      sha256 = "13nd2g1z4nvc3fa30xr3jnkqcy3fv4751s7ws4l93p7x6nc4aw1n";
     } else {
       url = "https://saucelabs.com/downloads/sc-${version}-osx.zip";
-      sha256 = "1dwjysj3kjydz096bm5x0s1g3jm4a7y0qkgbsc6bwl44vxz81f66";
+      sha256 = "0f8kcx7qd6bqbd74y6n83lb52zban9k631qkv1vyddvs9pjsxmpg";
     }
   );
 

pkgs/development/web/nodejs/v8.nix

@@ -10,11 +10,11 @@ let
   baseName = if enableNpm then "nodejs" else "nodejs-slim";
 in
   stdenv.mkDerivation (nodejs // rec {
-    version = "8.2.0";
+    version = "8.2.1";
     name = "${baseName}-${version}";
     src = fetchurl {
       url = "https://nodejs.org/download/release/v${version}/node-v${version}.tar.xz";
-      sha256 = "10a72gl24kzdhf598wnlpvld1lz175h6l9fsr06bc3k3fr8rgs2c";
+      sha256 = "12wcmm2g1zlihja41my5r06sla0s6ygvycxds1ryl3jl2j4nvi02";
     };
 
     patches = stdenv.lib.optionals stdenv.isDarwin [ ./no-xcode-v7.patch ];

pkgs/misc/cups/drivers/mfcj6510dwlpr/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, pkgsi686Linux, dpkg, makeWrapper, coreutils, gnused, gawk, file, cups, patchelf, utillinux, vimNox
+{ stdenv, fetchurl, pkgsi686Linux, dpkg, makeWrapper, coreutils, gnused, gawk, file, cups, patchelf, utillinux, xxd
 , ghostscript, a2ps }:
 
 # Why:
@@ -61,7 +61,7 @@ stdenv.mkDerivation rec {
     ${utillinux}/bin/hexdump -ve '1/1 "%.2X"' $out/usr/bin/brprintconf_mfcj6510dw | \
     sed 's.2F6F70742F62726F746865722F5072696E746572732F25732F696E662F6272257366756E63.62726d66636a36353130647766756e63000000000000000000000000000000000000000000.' | \
     sed 's.2F6F70742F62726F746865722F5072696E746572732F25732F696E662F627225737263.62726D66636A3635313064777263000000000000000000000000000000000000000000.' | \
-    ${vimNox}/bin/xxd -r -p > $out/usr/bin/brprintconf_mfcj6510dw_patched
+    ${xxd}/bin/xxd -r -p > $out/usr/bin/brprintconf_mfcj6510dw_patched
     chmod +x $out/usr/bin/brprintconf_mfcj6510dw_patched
     #executing from current dir. segfaults if it's not r\w.
     mkdir -p $out/bin
@@ -79,11 +79,11 @@ stdenv.mkDerivation rec {
     '';
 
   meta = with stdenv.lib; {
-    homepage = http://www.brother.com/;
-    description = "Brother MFC-J6510DW LPR driver";
-    license = with licenses; unfree;
-    platforms = with platforms; linux;
+    description  = "Brother MFC-J6510DW LPR driver";
     downloadPage = http://support.brother.com/g/b/downloadlist.aspx?c=us&lang=en&prod=mfcj6510dw_all&os=128;
-    maintainers = with maintainers; [ ramkromberg ];
+    homepage     = http://www.brother.com/;
+    license      = with licenses; unfree;
+    maintainers  = with maintainers; [ ramkromberg ];
+    platforms    = with platforms; linux;
   };
 }

pkgs/misc/misc.nix

@@ -23,7 +23,7 @@ in
   */
   collection = {list, name} : runCommand "collection-${name}" {} ''
     mkdir -p $out/nix-support
-    printLines ${builtins.toString list} > $out/nix-support/propagated-user-env-packages
+    echo ${builtins.toString list} > $out/nix-support/propagated-user-env-packages
   '';
 
   /* creates a derivation symlinking references C/C++ libs into one include and lib directory called $out/cdt-envs/${name}

pkgs/os-specific/linux/kernel/linux-4.11.nix

@@ -1,18 +0,0 @@
-{ stdenv, hostPlatform, fetchurl, perl, buildLinux, ... } @ args:
-
-import ./generic.nix (args // rec {
-  version = "4.11.11";
-  extraMeta.branch = "4.11";
-
-  src = fetchurl {
-    url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "1dvs1r3vq15akyv0yxvim6j09pqac5dagqbchvdlsw5yi4fnylc8";
-  };
-
-  kernelPatches = args.kernelPatches;
-
-  features.iwlwifi = true;
-  features.efiBootStub = true;
-  features.needsCifsUtils = true;
-  features.netfilterRPFilter = true;
-} // (args.argsOverride or {}))

pkgs/os-specific/linux/kernel/linux-4.12.nix

@@ -1,12 +1,12 @@
 { stdenv, hostPlatform, fetchurl, perl, buildLinux, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "4.12.2";
+  version = "4.12.3";
   extraMeta.branch = "4.12";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "1ql5y6bvb1bx9b2k5iksdzjgzxnq852rvq69kdnkwa98p8p8ayha";
+    sha256 = "05mz5rza2cn7pnn0cgd4pxal4xyjk74bl6h742v0xxlf4aqrvgcr";
   };
 
   kernelPatches = args.kernelPatches;

pkgs/os-specific/linux/kernel/linux-4.4.nix

@@ -1,12 +1,12 @@
 { stdenv, hostPlatform, fetchurl, perl, buildLinux, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "4.4.77";
+  version = "4.4.78";
   extraMeta.branch = "4.4";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "1s5l5b3hpm691w94a3ddliy4gcxi2s9xm3hsazdwgzqrqdv70ysy";
+    sha256 = "14xnmcw0f2faizd6ylhgw929yyc30hglr82mc5c62yzgszsdngvw";
   };
 
   kernelPatches = args.kernelPatches;

pkgs/os-specific/linux/kernel/linux-4.9.nix

@@ -1,12 +1,12 @@
 { stdenv, hostPlatform, fetchurl, perl, buildLinux, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "4.9.38";
+  version = "4.9.39";
   extraMeta.branch = "4.9";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "0x4h2b6xapqyxgivj9ay5yclmyl434bjfmq9ikajy7fmgpc8kmvn";
+    sha256 = "0cgs3kprx73qffzy0vwd3wz0jdsxbb8b9p881mrcxa3gjfxzg33f";
   };
 
   kernelPatches = args.kernelPatches;

pkgs/os-specific/linux/kernel/linux-hardened-copperhead.nix

@@ -1,9 +1,9 @@
 { stdenv, hostPlatform, fetchFromGitHub, perl, buildLinux, ... } @ args:
 
 let
-  version = "4.12.2";
+  version = "4.12.3";
   revision = "a";
-  sha256 = "0w3k5a30li2qz2msach9sg9qsvmjsc4mf9k3ad5dxd0667a0hygm";
+  sha256 = "0nxzpkh2ca47g6qykkfhf8qynpx3kr9vdkm9wixky159zxfj6s85";
 in
 
 import ./generic.nix (args // {

pkgs/os-specific/linux/kernel/linux-testing.nix

@@ -1,13 +1,13 @@
 { stdenv, hostPlatform, fetchurl, perl, buildLinux, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "4.13-rc1";
-  modDirVersion = "4.13.0-rc1";
+  version = "4.13-rc2";
+  modDirVersion = "4.13.0-rc2";
   extraMeta.branch = "4.13";
 
   src = fetchurl {
     url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz";
-    sha256 = "1pdbykp2336vk7ynrz0l95rwqags6kklbr08wjc7zpmdaad6yd6m";
+    sha256 = "1ni0z3v8zkqlmxn4czbw71yaipp6hbyh39vxdzpqy1dqn7zalmif";
   };
 
   features.iwlwifi = true;

pkgs/os-specific/linux/kernel/perf-binutils-path.patch

@@ -1,12 +0,0 @@
-diff -ru -x '*~' linux-4.9.31-orig/tools/perf/util/annotate.c linux-4.9.31/tools/perf/util/annotate.c
---- linux-4.9.31-orig/tools/perf/util/annotate.c	2017-06-07 12:08:04.000000000 +0200
-+++ linux-4.9.31/tools/perf/util/annotate.c	2017-06-12 13:10:08.811079574 +0200
-@@ -1350,7 +1350,7 @@
- 		 "%s %s%s --start-address=0x%016" PRIx64
- 		 " --stop-address=0x%016" PRIx64
- 		 " -l -d %s %s -C %s 2>/dev/null|grep -v %s|expand",
--		 objdump_path ? objdump_path : "objdump",
-+		 objdump_path ? objdump_path : OBJDUMP_PATH,
- 		 disassembler_style ? "-M " : "",
- 		 disassembler_style ? disassembler_style : "",
- 		 map__rip_2objdump(map, sym->start),

pkgs/os-specific/linux/kernel/perf.nix

@@ -1,4 +1,4 @@
-{ lib, stdenv, kernel, elfutils, python, perl, newt, slang, asciidoc, xmlto
+{ lib, stdenv, kernel, elfutils, python, perl, newt, slang, asciidoc, xmlto, makeWrapper
 , docbook_xsl, docbook_xml_dtd_45, libxslt, flex, bison, pkgconfig, libunwind, binutils
 , libiberty, libaudit
 , zlib, withGtk ? false, gtk2 ? null }:
@@ -13,8 +13,6 @@ stdenv.mkDerivation {
 
   inherit (kernel) src;
 
-  patches = kernel.patches ++ [ ./perf-binutils-path.patch ];
-
   preConfigure = ''
     cd tools/perf
     sed -i s,/usr/include/elfutils,$elfutils/include/elfutils, Makefile
@@ -26,7 +24,7 @@ stdenv.mkDerivation {
   # perf refers both to newt and slang
   # binutils is required for libbfd.
   nativeBuildInputs = [ asciidoc xmlto docbook_xsl docbook_xml_dtd_45 libxslt
-      flex bison libiberty libaudit ];
+      flex bison libiberty libaudit makeWrapper ];
   buildInputs = [ elfutils python perl newt slang pkgconfig libunwind binutils zlib ] ++
     stdenv.lib.optional withGtk gtk2;
 
@@ -45,6 +43,11 @@ stdenv.mkDerivation {
 
   installFlags = "install install-man ASCIIDOC8=1";
 
+  preFixup = ''
+    wrapProgram $out/bin/perf \
+      --prefix PATH : "${binutils}/bin"
+  '';
+
   crossAttrs = {
     /* I don't want cross-python or cross-perl -
        I don't know if cross-python even works */

pkgs/os-specific/linux/lvm2/default.nix

@@ -2,7 +2,7 @@
 , thin-provisioning-tools, enable_dmeventd ? false }:
 
 let
-  version = "2.02.140";
+  version = "2.02.173";
 in
 
 stdenv.mkDerivation {
@@ -10,7 +10,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "ftp://sources.redhat.com/pub/lvm2/releases/LVM2.${version}.tgz";
-    sha256 = "1jd46diyv7074fw8kxwq7imn4pl76g01d8y7z4scq0lkxf8jmpai";
+    sha256 = "0r4dx87z7ggxmxligdzz43chgfrwn9lyj7vaz63z97h0gs61dfff";
   };
 
   configureFlags = [
@@ -27,10 +27,7 @@ stdenv.mkDerivation {
 
   preConfigure =
     ''
-      substituteInPlace scripts/lvmdump.sh \
-        --replace /usr/bin/tr ${coreutils}/bin/tr
       substituteInPlace scripts/lvm2_activation_generator_systemd_red_hat.c \
-        --replace /usr/sbin/lvm $out/sbin/lvm \
         --replace /usr/bin/udevadm ${systemd.udev.bin}/bin/udevadm
 
       sed -i /DEFAULT_SYS_DIR/d Makefile.in

pkgs/servers/exhibitor/default.nix

@@ -0,0 +1,54 @@
+{ fetchFromGitHub, buildMaven, maven, jdk, makeWrapper, stdenv, ... }:
+stdenv.mkDerivation rec {
+  name = "exhibitor-${version}";
+  version = "1.5.6";
+
+  src = fetchFromGitHub {
+    owner = "soabase";
+    repo = "exhibitor";
+    sha256 = "07vikhkldxy51jbpy3jgva6wz75jksch6bjd6dqkagfgqd6baw45";
+    rev = "5fcdb411d06e8638c2380f7acb72a8a6909739cd";
+  };
+  mavenDependenciesSha256 = "00r69n9hwvrn5cbhxklx7w00sjmqvcxs7gvhbm150ggy7bc865qv";
+  # This is adapted from https://github.com/volth/nixpkgs/blob/6aa470dfd57cae46758b62010a93c5ff115215d7/pkgs/applications/networking/cluster/hadoop/default.nix#L20-L32
+  fetchedMavenDeps = stdenv.mkDerivation {
+    name = "exhibitor-${version}-maven-deps";
+    inherit src nativeBuildInputs;
+    buildPhase = ''
+      cd ${pomFileDir};
+      while timeout --kill-after=21m 20m mvn package -Dmaven.repo.local=$out/.m2; [ $? = 124 ]; do
+        echo "maven hangs while downloading :("
+      done
+    '';
+    installPhase = ''find $out/.m2 -type f \! -regex '.+\(pom\|jar\|xml\|sha1\)' -delete''; # delete files with lastModified timestamps inside
+    outputHashAlgo = "sha256";
+    outputHashMode = "recursive";
+    outputHash = mavenDependenciesSha256;
+  };
+
+  # The purpose of this is to fetch the jar file out of public Maven and use Maven
+  # to build a monolithic, standalone jar, rather than build everything from source
+  # (given the state of Maven support in Nix). We're not actually building any java
+  # source here.
+  pomFileDir = "exhibitor-standalone/src/main/resources/buildscripts/standalone/maven";
+  nativeBuildInputs = [ maven ];
+  buildInputs = [ makeWrapper ];
+  buildPhase = ''
+      cd ${pomFileDir}
+      mvn package --offline -Dmaven.repo.local=$(cp -dpR ${fetchedMavenDeps}/.m2 ./ && chmod +w -R .m2 && pwd)/.m2
+  '';
+  meta = with stdenv.lib; {
+    homepage = "https://github.com/soabase/exhibitor";
+    description = "ZooKeeper co-process for instance monitoring, backup/recovery, cleanup and visualization";
+    license = licenses.asl20;
+    platforms = platforms.unix;
+  };
+
+  installPhase = ''
+    mkdir -p $out/bin
+    mkdir -p $out/share/java
+    mv target/$name.jar $out/share/java/
+    makeWrapper ${jdk}/bin/java $out/bin/startExhibitor.sh --add-flags "-jar $out/share/java/$name.jar" --suffix PATH : ${stdenv.lib.makeBinPath [ jdk ]}
+  '';
+
+}

pkgs/servers/zookeeper/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, jre, makeWrapper, bash }:
+{ stdenv, fetchurl, jre, makeWrapper, bash, coreutils }:
 
 stdenv.mkDerivation rec {
   name = "zookeeper-${version}";
@@ -17,12 +17,15 @@ stdenv.mkDerivation rec {
     mkdir -p $out
     cp -R conf docs lib ${name}.jar $out
     mkdir -p $out/bin
-    cp -R bin/{zkCli,zkCleanup,zkEnv}.sh $out/bin
+    cp -R bin/{zkCli,zkCleanup,zkEnv,zkServer}.sh $out/bin
     for i in $out/bin/{zkCli,zkCleanup}.sh; do
       wrapProgram $i \
         --set JAVA_HOME "${jre}" \
         --prefix PATH : "${bash}/bin"
     done
+    substituteInPlace $out/bin/zkServer.sh \
+        --replace /bin/echo ${coreutils}/bin/echo \
+        --replace "/usr/bin/env bash" ${bash}/bin/bash
     chmod -x $out/bin/zkEnv.sh
 
     mkdir -p $out/share/zooinspector

pkgs/stdenv/generic/builder.sh

@@ -1,3 +1,4 @@
+export PATH=
 for i in $initialPath; do
     if [ "$i" = / ]; then i=; fi
     PATH=$PATH${PATH:+:}$i/bin
@@ -14,6 +15,4 @@ cat "$setup" >> $out/setup
 # Allow the user to install stdenv using nix-env and get the packages
 # in stdenv.
 mkdir $out/nix-support
-if [ "$propagatedUserEnvPkgs" ]; then
-    printf '%s\n' $propagatedUserEnvPkgs > $out/nix-support/propagated-user-env-packages
-fi
+echo $propagatedUserEnvPkgs > $out/nix-support/propagated-user-env-packages

pkgs/stdenv/generic/setup.sh

@@ -215,11 +215,6 @@ isScript() {
     if [[ "$magic" =~ \#! ]]; then return 0; else return 1; fi
 }
 
-# printf unfortunately will print a trailing newline regardless
-printLines() {
-    [[ $# -gt 0 ]] || return 0
-    printf '%s\n' "$@"
-}
 
 ######################################################################
 # Initialisation.
@@ -305,12 +300,9 @@ findInputs() {
     fi
 
     if [ -f "$pkg/nix-support/$propagatedBuildInputsFile" ]; then
-        local fd pkgNext
-        exec {fd}<"$pkg/nix-support/$propagatedBuildInputsFile"
-        while IFS= read -r -u $fd pkgNext; do
-            findInputs "$pkgNext" $var $propagatedBuildInputsFile
+        for i in $(cat "$pkg/nix-support/$propagatedBuildInputsFile"); do
+            findInputs "$i" $var $propagatedBuildInputsFile
         done
-        exec {fd}<&-
     fi
 }
 
@@ -802,17 +794,17 @@ fixupPhase() {
         fi
         if [ -n "$propagated" ]; then
             mkdir -p "${!outputDev}/nix-support"
-            printLines $propagated > "${!outputDev}/nix-support/propagated-native-build-inputs"
+            echo "$propagated" > "${!outputDev}/nix-support/propagated-native-build-inputs"
         fi
     else
         if [ -n "$propagatedBuildInputs" ]; then
             mkdir -p "${!outputDev}/nix-support"
-            printLines $propagatedBuildInputs > "${!outputDev}/nix-support/propagated-build-inputs"
+            echo "$propagatedBuildInputs" > "${!outputDev}/nix-support/propagated-build-inputs"
         fi
 
         if [ -n "$propagatedNativeBuildInputs" ]; then
             mkdir -p "${!outputDev}/nix-support"
-            printLines $propagatedNativeBuildInputs > "${!outputDev}/nix-support/propagated-native-build-inputs"
+            echo "$propagatedNativeBuildInputs" > "${!outputDev}/nix-support/propagated-native-build-inputs"
         fi
     fi
 
@@ -825,7 +817,7 @@ fixupPhase() {
 
     if [ -n "$propagatedUserEnvPkgs" ]; then
         mkdir -p "${!outputBin}/nix-support"
-        printLines $propagatedUserEnvPkgs > "${!outputBin}/nix-support/propagated-user-env-packages"
+        echo "$propagatedUserEnvPkgs" > "${!outputBin}/nix-support/propagated-user-env-packages"
     fi
 
     runHook postFixup

pkgs/tools/X11/setroot/default.nix

@@ -5,14 +5,14 @@
 assert enableXinerama -> libXinerama != null;
 
 stdenv.mkDerivation rec {
-  version = "1.4.4";
+  version = "2.0.1";
   name = "setroot-${version}";
 
   src = fetchFromGitHub {
     owner = "ttzhou";
     repo = "setroot";
     rev = "v${version}";
-    sha256 = "0vphma0as8pnqrakdw6gaiiz7xawb4y72sc9dna755kkclgbyl8m";
+    sha256 = "01krjfc3xpp0wbqz9nvf1n34gkpd41gysn289sj1wcjxia4n4gsi";
   };
 
   buildInputs = [ libX11 imlib2 ]
@@ -26,6 +26,7 @@ stdenv.mkDerivation rec {
     description = "Simple X background setter inspired by imlibsetroot and feh";
     homepage = https://github.com/ttzhou/setroot;
     license = licenses.gpl3Plus;
+    maintainers = maintainers.vyp;
     platforms = platforms.unix;
   };
 }

pkgs/tools/backup/znapzend/default.nix

@@ -1,8 +1,8 @@
 { stdenv, fetchFromGitHub, zfs, mbuffer, perl, perlPackages, wget, autoconf, automake }:
 
 let
-  version = "0.15.7";
-  checksum = "1xb94kxfq9sm3g0s6wpyyz6h2aihgca5gyybg0a5r8sar7yz97j0";
+  version = "0.17.0";
+  checksum = "0cncwkiw0w2am7gwi01p6ln87zgg1x6blfyxx7n7x8m1mv6704hl";
 in
 stdenv.mkDerivation rec {
   name = "znapzend-${version}";

pkgs/tools/misc/diffoscope/default.nix

@@ -29,12 +29,10 @@ python3.pkgs.buildPythonApplication rec {
   # Still missing these tools: enjarify, otool & lipo (maybe OS X only), showttf
   # Also these libraries: python3-guestfs
   # FIXME: move xxd into a separate package so we don't have to pull in all of vim.
-  buildInputs =
-    map lib.getBin ([ acl binutils bzip2 cbfstool cdrkit cpio diffutils e2fsprogs file gettext
+  pythonPath = with python3.pkgs;
+    [ debian libarchive-c python_magic tlsh rpm cdrkit acl binutils bzip2 cbfstool cpio diffutils e2fsprogs file gettext
       gzip libcaca poppler_utils sng sqlite squashfsTools unzip vim xz colordiff
-    ] ++ lib.optionals enableBloat [ colord fpc ghc gnupg1 jdk mono pdftk ]);
-
-  pythonPath = with python3.pkgs; [ debian libarchive-c python_magic tlsh rpm ];
+    ] ++ lib.optionals enableBloat [ colord fpc ghc gnupg1 jdk mono pdftk ];
 
   doCheck = false; # Calls 'mknod' in squashfs tests, which needs root
 

pkgs/tools/misc/fzf/default.nix

@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "fzf-${version}";
-  version = "0.16.8";
+  version = "0.16.10";
   rev = "${version}";
 
   goPackagePath = "github.com/junegunn/fzf";
@@ -11,7 +11,7 @@ buildGoPackage rec {
     inherit rev;
     owner = "junegunn";
     repo = "fzf";
-    sha256 = "0d0fcv07pl2vvj9ql84rmy1kd0zg680chsfapm0iw3vssxqkm9zq";
+    sha256 = "0c9c9x2pim5g2jwy6jkdws2s7b1mw2qlnba1q46a1izswm7ljfq7";
   };
 
   outputs = [ "bin" "out" "man" ];

pkgs/tools/misc/xxd/default.nix

@@ -0,0 +1,16 @@
+{ stdenv, vim }:
+
+stdenv.mkDerivation rec {
+  name = "xxd-${version}";
+  inherit (vim) version;
+  phases = [ "installPhase" ];
+  installPhase = ''
+    mkdir -p $out/{bin,share/man/man1}
+    install -m755 ${stdenv.lib.getBin vim}/bin/xxd $out/bin/xxd
+    install -m644 ${stdenv.lib.getBin vim}/share/man/man1/xxd.1.gz $out/share/man/man1/xxd.1.gz
+  '';
+  meta = with stdenv.lib; {
+    description = "Make a hexdump or do the reverse.";
+    inherit (vim.meta) homepage license maintainers platforms;
+  };
+}

pkgs/tools/networking/network-manager/l2tp.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, automake, autoconf, libtool, intltool, pkgconfig
+{ stdenv, fetchFromGitHub, autoreconfHook, libtool, intltool, pkgconfig
 , networkmanager, ppp, xl2tpd, strongswan, libsecret
 , withGnome ? true, gnome3, networkmanagerapplet }:
 
@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
   buildInputs = [ networkmanager ppp libsecret ]
     ++ stdenv.lib.optionals withGnome [ gnome3.gtk gnome3.libgnome_keyring networkmanagerapplet ];
 
-  nativeBuildInputs = [ automake autoconf libtool intltool pkgconfig ];
+  nativeBuildInputs = [ autoreconfHook libtool intltool pkgconfig ];
 
   postPatch = ''
     sed -i -e 's%"\(/usr/sbin\|/usr/pkg/sbin\|/usr/local/sbin\)/[^"]*",%%g' ./src/nm-l2tp-service.c
@@ -27,7 +27,9 @@ stdenv.mkDerivation rec {
       --replace /sbin/xl2tpd ${xl2tpd}/bin/xl2tpd
   '';
 
-  preConfigure = "./autogen.sh";
+  preConfigure = ''
+    intltoolize -f
+  '';
 
   configureFlags =
     if withGnome then "--with-gnome" else "--without-gnome";

pkgs/tools/package-management/nix-index/default.nix

@@ -0,0 +1,32 @@
+{ lib, rustPlatform, fetchFromGitHub, pkgconfig, openssl, curl }:
+
+with rustPlatform;
+
+buildRustPackage rec {
+  name = "nix-index-${version}";
+  version = "0.1.0";
+
+  src = fetchFromGitHub {
+    owner = "bennofs";
+    repo = "nix-index";
+    rev = "v${version}";
+    sha256 = "1lmg65yqkwf2a5qxm3dmv8158kqhnriir062vlgar5wimf409rm5";
+  };
+  depsSha256 = "0v145fi9bfiwvsdy7hz9lw4m2f2j8sxvixfzmjwfnq4klm51c8yl";
+  buildInputs = [pkgconfig openssl curl];
+
+  postInstall = ''
+    mkdir -p $out/etc/profile.d
+    cp ./command-not-found.sh $out/etc/profile.d/command-not-found.sh
+    substituteInPlace $out/etc/profile.d/command-not-found.sh \
+      --replace "@out@" "$out"
+  '';
+
+  meta = with lib; {
+    description = "A files database for nixpkgs";
+    homepage = https://github.com/bennofs/nix-index;
+    license = with licenses; [ bsd3 ];
+    maintainers = [ maintainers.bennofs ];
+    platforms = platforms.all;
+  };
+}

pkgs/tools/package-management/nix/default.nix

@@ -161,12 +161,12 @@ in rec {
 
   nixUnstable = (lib.lowPrio (common rec {
     name = "nix-1.12${suffix}";
-    suffix = "pre5506_3162ad5f";
+    suffix = "pre5511_c94f3d55";
     src = fetchFromGitHub {
       owner = "NixOS";
       repo = "nix";
-      rev = "3162ad5ff497b92fc25cd3f397eaff01d67340cc";
-      sha256 = "0gs1fqqm2ghbq2svz1h4bna9f0zjw2cs8ha7cn27kwajb14qw8fk";
+      rev = "c94f3d5575d7af5403274d1e9e2f3c9d72989751";
+      sha256 = "1akfzzm4f07wj6l7za916xv5rnh71pk3vl8dphgradjfqb37bv18";
     };
     fromGit = true;
   })) // { perl-bindings = perl-bindings { nix = nixUnstable; }; };

pkgs/tools/system/fio/default.nix

@@ -1,8 +1,8 @@
 { stdenv, fetchFromGitHub, libaio, python, zlib }:
 
 let
-  version = "2.21";
-  sha256 = "0nvvnhmls9gbn093lzcgps1w8824ylgyz674af85768pw2bvczzy";
+  version = "2.99";
+  sha256 = "0fj8fk2w06ahcn35z8pj88sx12yrx1yfd38j6k5aigj4dfj3f3zy";
 in
 
 stdenv.mkDerivation rec {

pkgs/top-level/all-packages.nix

@@ -480,6 +480,8 @@ with pkgs;
 
   as31 = callPackage ../development/compilers/as31 {};
 
+  owl-lisp = callPackage ../development/compilers/owl-lisp {};
+
   ascii = callPackage ../tools/text/ascii { };
 
   asciinema = callPackage ../tools/misc/asciinema {};
@@ -11045,6 +11047,8 @@ with pkgs;
 
   ejabberd = callPackage ../servers/xmpp/ejabberd { };
 
+  exhibitor = callPackage ../servers/exhibitor { };
+
   prosody = callPackage ../servers/xmpp/prosody {
     lua5 = lua5_1;
     inherit (lua51Packages) luasocket luasec luaexpat luafilesystem luabitop luaevent luazlib;
@@ -12067,22 +12071,6 @@ with pkgs;
       ];
   };
 
-  linux_4_11 = callPackage ../os-specific/linux/kernel/linux-4.11.nix {
-    kernelPatches =
-      [ kernelPatches.bridge_stp_helper
-        kernelPatches.p9_fixes
-        # See pkgs/os-specific/linux/kernel/cpu-cgroup-v2-patches/README.md
-        # when adding a new linux version
-        kernelPatches.cpu-cgroup-v2."4.11"
-        kernelPatches.modinst_arg_list_too_long
-      ]
-      ++ lib.optionals ((platform.kernelArch or null) == "mips")
-      [ kernelPatches.mips_fpureg_emu
-        kernelPatches.mips_fpu_sigill
-        kernelPatches.mips_ext3_n32
-      ];
-  };
-
   linux_4_12 = callPackage ../os-specific/linux/kernel/linux-4.12.nix {
     kernelPatches =
       [ kernelPatches.bridge_stp_helper
@@ -12293,7 +12281,6 @@ with pkgs;
   linuxPackages_3_10 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_3_10);
   linuxPackages_4_4 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_4);
   linuxPackages_4_9 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_9);
-  linuxPackages_4_11 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_11);
   linuxPackages_4_12 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_12);
   # Don't forget to update linuxPackages_latest!
 
@@ -13479,6 +13466,8 @@ with pkgs;
     inherit (gnome2) zenity;
   };
 
+  blackbox = callPackage ../applications/version-management/blackbox { };
+
   bleachbit = callPackage ../applications/misc/bleachbit { };
 
   blender = callPackage  ../applications/misc/blender {
@@ -14142,6 +14131,8 @@ with pkgs;
 
   gksu = callPackage ../applications/misc/gksu { };
 
+  gnss-sdr = callPackage ../applications/misc/gnss-sdr { };
+
   gnuradio = callPackage ../applications/misc/gnuradio {
     inherit (python2Packages) cheetah lxml matplotlib numpy python pyopengl pyqt4 scipy wxPython pygtk;
     fftw = fftwFloat;
@@ -14538,7 +14529,7 @@ with pkgs;
 
   gosmore = callPackage ../applications/misc/gosmore { };
 
-  gpsbabel = libsForQt5.callPackage ../applications/misc/gpsbabel {
+  gpsbabel = libsForQt56.callPackage ../applications/misc/gpsbabel {
     inherit (darwin) IOKit;
   };
 
@@ -16451,6 +16442,8 @@ with pkgs;
     flags = [ "python" "X11" ]; # only flag "X11" by now
   });
 
+  xxd = callPackage ../tools/misc/xxd { };
+
   vimNox = lowPrio (vim_configurable.override { source = "vim-nox"; });
 
   qpdfview = callPackage ../applications/misc/qpdfview {};
@@ -18676,12 +18669,14 @@ with pkgs;
 
   nixops = callPackage ../tools/package-management/nixops { };
 
-  nixopsUnstable = callPackage ../tools/package-management/nixops/unstable.nix { };
+  nixopsUnstable = lowPrio (callPackage ../tools/package-management/nixops/unstable.nix { });
 
   nixui = callPackage ../tools/package-management/nixui { node_webkit = nwjs_0_12; };
 
   nix-bundle = callPackage ../tools/package-management/nix-bundle { nix = nixUnstable; };
 
+  nix-index = callPackage ../tools/package-management/nix-index { };
+
   inherit (callPackages ../tools/package-management/nix-prefetch-scripts { })
     nix-prefetch-bzr
     nix-prefetch-cvs

pkgs/top-level/python-packages.nix

@@ -763,28 +763,7 @@ in {
   };
 
 
-  arrow = buildPythonPackage rec {
-    name = "arrow-${version}";
-    version = "0.7.0";
-
-    src = pkgs.fetchurl {
-      url    = "mirror://pypi/a/arrow/${name}.tar.gz";
-      sha256 = "0yx10dz3hp825fcq9w15zbp26v622npcjscb91da05zig8036lra";
-    };
-
-    checkPhase = ''
-      nosetests
-    '';
-
-    buildInputs = with self; [ nose chai simplejson ];
-    propagatedBuildInputs = with self; [ dateutil ];
-
-    meta = {
-      description = "Python library for date manipulation";
-      license     = "apache";
-      maintainers = with maintainers; [ thoughtpolice ];
-    };
-  };
+  arrow = callPackage ../development/python-modules/arrow { };
 
   async = buildPythonPackage rec {
     name = "async-0.6.1";
@@ -9016,49 +8995,6 @@ in {
     };
   };
 
-  substanced = buildPythonPackage rec {
-    # no release yet
-    rev = "089818bc61c3dc5eca023254e37a280b041ea8cc";
-    name = "substanced-${rev}";
-
-    src = pkgs.fetchgit {
-      inherit rev;
-      url = "https://github.com/Pylons/substanced.git";
-      sha256 = "1fb8m5aylw8kig13fvldchgkxi4s2xlvwralrzinyma3imbznd3q";
-    };
-
-    buildInputs = with self; [ mock ];
-    patchPhase = ''
-      sed -i 's/assert_call(/assert_called_with(/' substanced/workflow/tests/test_workflow.py
-    '';
-
-    propagatedBuildInputs = with self; [
-      pyramid
-      pytz
-      zodb
-      venusian
-      colander
-      deform
-      python_magic
-      pyyaml
-      cryptacular
-      hypatia
-      zope_copy
-      zope_component
-      zope_deprecation
-      statsd
-      pyramid_zodbconn
-      pyramid_mailer
-      pyramid_chameleon
-      ZEO
-    ];
-
-    meta = {
-      maintainers = with maintainers; [ domenkozar ];
-    };
-  };
-
-
   svg-path = buildPythonPackage rec {
     name = "svg.path-${version}";
     version = "2.0b1";
@@ -14023,6 +13959,8 @@ in {
      substituteInPlace ./test/asizeof/test_asizeof.py --replace "self.assert_(not e" "#self.assert_(not e"
     '';
 
+    doCheck = stdenv.hostPlatform.isLinux;
+
     meta = {
       description = "Tool to measure, monitor and analyze memory behavior";
       homepage = http://pythonhosted.org/Pympler/;

pkgs/top-level/rust-packages.nix

@@ -7,13 +7,13 @@
 { stdenv, fetchFromGitHub, git }:
 
 stdenv.mkDerivation {
-  name = "rustRegistry-2017-07-17";
+  name = "rustRegistry-2017-07-23";
 
   src = fetchFromGitHub {
     owner = "rust-lang";
     repo = "crates.io-index";
-    rev = "14f1d497ede721229b23ad1e8b6122f34761f1a6";
-    sha256 = "1a9aav9yg7ffrilsnzlbaysxgzfzg455jfdh260n9y6wvpnpfvg9";
+    rev = "ed8e6a6761278861db046073cc69d6a5e7dd8c15";
+    sha256 = "1v72m0h31xcay2m64n2wil5wqnl8z4n4adxxpdllcpgj3pj5jai6";
   };
   phases = [ "unpackPhase" "installPhase" ];
   installPhase = ''