Merge pull request #325617 from Sigmanificient/gstools

python312Packages.gstools: init at 1.5.2; python312Packages.hankel: init at 1.2.2; python312Packages.pyevtk: init at 1.2.0

pkgs/development/python-modules/gstools/default.nix

@@ -0,0 +1,64 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  setuptools,
+  setuptools-scm,
+  numpy,
+  cython,
+  extension-helpers,
+  hankel,
+  emcee,
+  meshio,
+  pyevtk,
+  scipy,
+  pytestCheckHook,
+}:
+
+buildPythonPackage rec {
+  pname = "gstools";
+  version = "1.6.0";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "GeoStat-Framework";
+    repo = "GSTools";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-QpdOARzcSRVFl/DbnE2JLBFZmTSh/fBOmzweuf+zfEs=";
+  };
+
+  build-system = [
+    setuptools
+    setuptools-scm
+    numpy
+    cython
+    extension-helpers
+  ];
+
+  dependencies = [
+    emcee
+    hankel
+    meshio
+    numpy
+    pyevtk
+    scipy
+  ];
+
+  # scipy derivation dont support numpy_2 and is patched to use version 1
+  # Using numpy_2 in the derivation will cause a clojure duplicate error
+  postPatch = ''
+    substituteInPlace pyproject.toml \
+      --replace-fail 'numpy>=2.0.0rc1,' 'numpy' \
+  '';
+
+  pythonImportsCheck = [ "gstools" ];
+  nativeCheckInputs = [ pytestCheckHook ];
+
+  meta = {
+    description = "Geostatistical toolbox";
+    homepage = "https://github.com/GeoStat-Framework/GSTools";
+    changelog = "https://github.com/GeoStat-Framework/GSTools/blob/${src.rev}/CHANGELOG.md";
+    license = lib.licenses.lgpl3Only;
+    maintainers = with lib.maintainers; [ sigmanificient ];
+  };
+}

pkgs/development/python-modules/hankel/default.nix

@@ -0,0 +1,49 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  setuptools,
+  setuptools-scm,
+  mpmath,
+  numpy,
+  scipy,
+  pytestCheckHook,
+  pytest-xdist,
+}:
+
+buildPythonPackage rec {
+  pname = "hankel";
+  version = "1.2.2";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "steven-murray";
+    repo = "hankel";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-/5PvbH8zz2siLS1YJYRSrl/Cpi0WToBu1TJhlek8VEE=";
+  };
+
+  build-system = [
+    setuptools
+    setuptools-scm
+  ];
+  dependencies = [
+    mpmath
+    numpy
+    scipy
+  ];
+
+  pythonImportsCheck = [ "hankel" ];
+  nativeCheckInputs = [
+    pytestCheckHook
+    pytest-xdist
+  ];
+
+  meta = {
+    description = "Implementation of Ogata's (2005) method for Hankel transforms";
+    homepage = "https://github.com/steven-murray/hankel";
+    changelog = "https://github.com/steven-murray/hankel/${src.rev}/CHANGELOG.rst";
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ sigmanificient ];
+  };
+}

pkgs/development/python-modules/pyevtk/default.nix

@@ -0,0 +1,45 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  setuptools,
+  numpy,
+  pytestCheckHook,
+  pytest-cov,
+}:
+
+buildPythonPackage rec {
+  pname = "pyevtk";
+  version = "1.2.0";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "pyscience-projects";
+    repo = "pyevtk";
+    rev = "refs/tags/v${version}";
+    hash = "sha256-HrodoVxjREZiutgRJ3ZUrART29+gAZfpR9f4A4SRh4Q=";
+  };
+
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace-fail 'setup_requires=["pytest-runner"],' 'setup_requires=[],'
+  '';
+
+  build-system = [ setuptools ];
+  dependencies = [ numpy ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    pytest-cov
+  ];
+
+  pythonImportsCheck = [ "pyevtk" ];
+
+  meta = {
+    description = "Exports data to binary VTK files for visualization/analysis";
+    homepage = "https://github.com/pyscience-projects/pyevtk";
+    changelog = "https://github.com/pyscience-projects/pyevtk/blob/${src.rev}/CHANGES.txt";
+    license = lib.licenses.bsd2;
+    maintainers = with lib.maintainers; [ sigmanificient ];
+  };
+}

pkgs/top-level/python-packages.nix

@@ -5331,6 +5331,8 @@ self: super: with self; {
     inherit (pkgs.buildPackages) meson;
   };
 
+  gstools = callPackage ../development/python-modules/gstools { };
+
   gtfs-realtime-bindings = callPackage ../development/python-modules/gtfs-realtime-bindings { };
 
   gto = callPackage ../development/python-modules/gto { };
@@ -5421,6 +5423,8 @@ self: super: with self; {
 
   handout = callPackage ../development/python-modules/handout { };
 
+  hankel = callPackage ../development/python-modules/hankel { };
+
   hap-python = callPackage ../development/python-modules/hap-python { };
 
   hass-nabucasa = callPackage ../development/python-modules/hass-nabucasa { };
@@ -11268,6 +11272,8 @@ self: super: with self; {
 
   pyevilgenius = callPackage ../development/python-modules/pyevilgenius { };
 
+  pyevtk = callPackage ../development/python-modules/pyevtk { };
+
   pyexcel = callPackage ../development/python-modules/pyexcel { };
 
   pyexcel-io = callPackage ../development/python-modules/pyexcel-io { };