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openmpi: patch for legitimate zero size messages

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This patch is required in order to make python-mpi4py tests pass.
It is also a bug in the openmpi implementation to see full discussion
see https://www.open-mpi.org/community/lists/users/2015/11/28030.php
This commit is contained in:
Chris Ostrouchov 2016-04-04 11:09:00 -04:00
parent 8e0f0776aa
commit d076a13c1d
2 changed files with 36 additions and 1 deletions
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7
pkgs/development/libraries/openmpi/default.nix
View file

@ -20,6 +20,12 @@ in stdenv.mkDerivation rec {
sha256 = "14p4px9a3qzjc22lnl6braxrcrmd9rgmy7fh4qpanawn2pgfq6br";
};
# Bug in openmpi implementation for zero sized messages
# Patch required to make mpi4py pass. Will NOT
# be required when openmpi >= 2.0.0
# https://www.open-mpi.org/community/lists/users/2015/11/28030.php
patches = [ ./nbc_copy.patch ];
buildInputs = [ gfortran libibverbs ];
nativeBuildInputs = [ perl ];
@ -42,4 +48,3 @@ in stdenv.mkDerivation rec {
maintainers = [ stdenv.lib.maintainers.mornfall ];
};
}

30
pkgs/development/libraries/openmpi/nbc_copy.patch Normal file
View file

@ -0,0 +1,30 @@
commit 4ee20ba31dd64b8f899447cdad78ec2379acfce7
Author: Gilles Gouaillardet <gilles@rist.or.jp>
Date: Tue Nov 10 08:59:03 2015 +0900
fix NBC_Copy for legitimate zero size messages
(back ported from commit open-mpi/ompi@0bd765eddd33e3d4ac18ec644c60a5c160cb48dc)
(back ported from commit open-mpi/ompi@9a70765f27fdf17e70e1a115754fef7e5f16132a)
diff --git a/ompi/mca/coll/libnbc/nbc_internal.h b/ompi/mca/coll/libnbc/nbc_internal.h
index bf2f1cb..81be8cc 100644
--- a/ompi/mca/coll/libnbc/nbc_internal.h
+++ b/ompi/mca/coll/libnbc/nbc_internal.h
@@ -501,7 +501,14 @@ static inline int NBC_Copy(void *src, int srccount, MPI_Datatype srctype, void *
} else {
/* we have to pack and unpack */
res = MPI_Pack_size(srccount, srctype, comm, &size);
- if (MPI_SUCCESS != res || 0 == size) { printf("MPI Error in MPI_Pack_size() (%i:%i)\n", res, size); return (MPI_SUCCESS == res) ? MPI_ERR_SIZE : res;}
+ if (MPI_SUCCESS != res) {
+ printf ("MPI Error in MPI_Pack_size() (%i:%i)", res, size);
+ return res;
+ }
+
+ if (0 == size) {
+ return OMPI_SUCCESS;
+ }
packbuf = malloc(size);
if (NULL == packbuf) { printf("Error in malloc()\n"); return res; }
pos=0;