Merge remote-tracking branch 'upstream/master' into sage-8.9

nixos/modules/services/backup/postgresql-wal-receiver.nix

@@ -169,13 +169,14 @@ in {
     systemd.services = with attrsets; mapAttrs' (name: config: nameValuePair "postgresql-wal-receiver-${name}" {
       description = "PostgreSQL WAL receiver (${name})";
       wantedBy = [ "multi-user.target" ];
+      startLimitIntervalSec = 0; # retry forever, useful in case of network disruption
 
       serviceConfig = {
         User = "postgres";
         Group = "postgres";
         KillSignal = "SIGINT";
         Restart = "always";
-        RestartSec = 30;
+        RestartSec = 60;
       };
 
       inherit (config) environment;

pkgs/applications/audio/mopidy/default.nix

@@ -21,7 +21,7 @@ pythonPackages.buildPythonApplication rec {
   ];
 
   propagatedBuildInputs = with pythonPackages; [
-    gst-python pygobject3 pykka tornado_4 requests
+    gst-python pygobject3 pykka tornado_4 requests setuptools
   ] ++ stdenv.lib.optional (!stdenv.isDarwin) dbus-python;
 
   # There are no tests

pkgs/applications/audio/mopidy/iris.nix

@@ -2,11 +2,11 @@
 
 pythonPackages.buildPythonApplication rec {
   pname = "Mopidy-Iris";
-  version = "3.39.0";
+  version = "3.40.0";
 
   src = pythonPackages.fetchPypi {
     inherit pname version;
-    sha256 = "1d2g66gvm7yaz4nbxlh23lj2xfkhi3hsg2k646m1za510f8dzlag";
+    sha256 = "1cn68zmyvig114dsw7vhx761v9c1za3wnbq4y2z0f0cbl958n49v";
   };
 
   propagatedBuildInputs = [

pkgs/applications/blockchains/jormungandr/default.nix

@@ -10,16 +10,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "jormungandr";
-  version = "0.3.9999";
+  version = "0.5.0";
 
   src = fetchgit {
     url = "https://github.com/input-output-hk/${pname}";
     rev = "v${version}";
-    sha256 = "11lr533fpispwbk4vsq9bnv40gkpybvpa7ajwczv9ky6afh8np5b";
+    sha256 = "19jqnja4mxyfgg79m4ak4815wjxvkg6qn04gk21c15xl3i8b4zf6";
     fetchSubmodules = true;
   };
 
-  cargoSha256 = "0b5phmvwv5cyjawlxd9rmlc403lxzm4gnw0mclq70g5g0msqzd9m";
+  cargoSha256 = "1grrxmczdmkf2sd0f0b2iblzzcp8qlrsad5dkm0r5vxch22rcx7d";
 
   nativeBuildInputs = [ pkgconfig protobuf ];
   buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security ];

pkgs/applications/misc/simplenote/default.nix

@@ -1,64 +1,75 @@
-{ fetchurl, stdenv, lib, zlib, glib, alsaLib, dbus, gtk2, atk, pango, freetype, fontconfig
-, libgnome-keyring3, gdk-pixbuf, cairo, cups, expat, libgpgerror, nspr
-, nss, xorg, libcap, systemd, libnotify ,libXScrnSaver, gnome2 }:
+{ atomEnv, autoPatchelfHook, dpkg, fetchurl, makeDesktopItem, makeWrapper
+, stdenv, udev, wrapGAppsHook }:
 
-stdenv.mkDerivation rec {
+let
+  inherit (stdenv.hostPlatform) system;
 
-  name = "simplenote-${pkgver}";
-  pkgver = "1.1.3";
+  pname = "simplenote";
 
-  src = fetchurl {
-    url = "https://github.com/Automattic/simplenote-electron/releases/download/v${pkgver}/Simplenote-linux-${pkgver}.tar.gz";
-    sha256 = "1z92yyjmg3bgfqfdpnysf98h9hhhnqzdqqigwlmdmn3d7fy49kcf";
-  };
+  version = "1.8.0";
 
-  buildCommand = let
-
-    packages = [
-      stdenv.cc.cc zlib glib dbus gtk2 atk pango freetype libgnome-keyring3
-      fontconfig gdk-pixbuf cairo cups expat libgpgerror alsaLib nspr nss
-      xorg.libXrender xorg.libX11 xorg.libXext xorg.libXdamage xorg.libXtst
-      xorg.libXcomposite xorg.libXi xorg.libXfixes xorg.libXrandr
-      xorg.libXcursor libcap systemd libnotify libXScrnSaver gnome2.GConf
-      xorg.libxcb
-    ];
-
-    libPathNative = lib.makeLibraryPath packages;
-    libPath64 = lib.makeSearchPathOutput "lib" "lib64" packages;
-    libPath = "${libPathNative}:${libPath64}";
-
-  in ''
-    mkdir -p $out/share/
-    mkdir -p $out/bin
-    tar xvzf $src -C $out/share/
-    mv $out/share/Simplenote-linux-x64 $out/share/simplenote
-    mv $out/share/simplenote/Simplenote $out/share/simplenote/simplenote
-    mkdir -p $out/share/applications
-
-    cat > $out/share/applications/simplenote.desktop << EOF
-    [Desktop Entry]
-    Name=Simplenote
-    Comment=Simplenote for Linux
-    Exec=$out/bin/simplenote
-    Icon=$out/share/simplenote/Simplenote.png
-    Type=Application
-    StartupNotify=true
-    Categories=Development;
-    EOF
-
-    fixupPhase
-
-    patchelf --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \
-      --set-rpath "${libPath}:$out/share/simplenote" \
-      $out/share/simplenote/simplenote
-
-    ln -s $out/share/simplenote/simplenote $out/bin/simplenote
-  '';
+  sha256 = {
+    x86_64-linux = "066gr1awdj5nwdr1z57mmvx7dd1z19g0wzsgbnrrb89bqfj67ykl";
+  }.${system};
 
   meta = with stdenv.lib; {
     description = "The simplest way to keep notes";
-    homepage = https://github.com/Automattic/simplenote-electron;
-    license = licenses.lgpl2;
+    homepage = "https://github.com/Automattic/simplenote-electron";
+    license = licenses.gpl2;
+    maintainers = with maintainers; [ kiwi ];
     platforms = [ "x86_64-linux" ];
   };
-}
+
+  linux = stdenv.mkDerivation rec {
+    inherit pname version meta;
+
+    src = fetchurl {
+      url =
+        "https://github.com/Automattic/simplenote-electron/releases/download/"
+        + "v${version}/Simplenote-linux-${version}-amd64.deb";
+      inherit sha256;
+    };
+
+    desktopItem = makeDesktopItem {
+      name = "simplenote";
+      comment = "Simplenote for Linux";
+      exec = "simplenote %U";
+      icon = "simplenote";
+      type = "Application";
+      startupNotify = "true";
+      desktopName = "Simplenote";
+      categories = "Development";
+    };
+
+    dontBuild = true;
+    dontConfigure = true;
+    dontPatchELF = true;
+    dontWrapGApps = true;
+
+    buildInputs = atomEnv.packages;
+
+    nativeBuildInputs = [ dpkg makeWrapper autoPatchelfHook wrapGAppsHook ];
+
+    unpackPhase = "dpkg-deb -x $src .";
+
+    installPhase = ''
+      mkdir -p "$out/bin"
+      cp -R "opt" "$out"
+      cp -R "usr/share" "$out/share"
+      chmod -R g-w "$out"
+
+      mkdir -p "$out/share/applications"
+      cp "${desktopItem}/share/applications/"* "$out/share/applications"
+    '';
+
+    runtimeDependencies = [ udev.lib ];
+
+    postFixup = ''
+      ls -ahl $out
+      makeWrapper $out/opt/Simplenote/simplenote $out/bin/simplenote \
+      "''${gappsWrapperArgs[@]}"
+    '';
+  };
+
+in
+  linux

pkgs/applications/science/math/pynac/default.nix

@@ -9,14 +9,14 @@
 }:
 
 stdenv.mkDerivation rec {
-  version = "0.7.25";
+  version = "0.7.26";
   pname = "pynac";
 
   src = fetchFromGitHub {
     owner = "pynac";
     repo = "pynac";
     rev = "pynac-${version}";
-    sha256 = "0nnifvg6kzx0lq6gz7znind8g30v3d2pjfwgsdiks3vv9kv9nbj3";
+    sha256 = "09d2p74x1arkydlxy6pw4p4byi7r8q7f29w373h4d8a215kadc6d";
   };
 
   buildInputs = [

pkgs/build-support/appimage/default.nix

@@ -185,6 +185,7 @@ rec {
       keyutils.lib
       libjack2
       fribidi
+      p11_kit
 
       # libraries not on the upstream include list, but nevertheless expected
       # by at least one appimage

pkgs/development/libraries/libotr/default.nix

@@ -8,8 +8,9 @@ stdenv.mkDerivation rec {
     sha256 = "1x8rliydhbibmzwdbyr7pd7n87m2jmxnqkpvaalnf4154hj1hfwb";
   };
 
+  outputs = [ "bin" "out" "dev" ];
+
   nativeBuildInputs = [ autoreconfHook ];
-  buildInputs = [ ];
   propagatedBuildInputs = [ libgcrypt ];
 
   meta = with stdenv.lib; {

pkgs/development/libraries/science/networking/ns-3/default.nix

@@ -1,5 +1,5 @@
 { stdenv
-, fetchFromGitHub
+, fetchFromGitLab
 , python
 , wafHook
 
@@ -22,75 +22,89 @@
 , dia, tetex ? null, ghostscript ? null, texlive ? null
 
 # generates python bindings
-, generateBindings ? false, ncurses ? null
+, pythonSupport ? false, ncurses ? null
 
 # All modules can be enabled by choosing 'all_modules'.
 # we include here the DCE mandatory ones
 , modules ? [ "core" "network" "internet" "point-to-point" "fd-net-device" "netanim"]
-, gcc6
 , lib
 }:
 
 let
   pythonEnv = python.withPackages(ps:
     stdenv.lib.optional withManual ps.sphinx
-    ++ stdenv.lib.optionals generateBindings (with ps;[ pybindgen pygccxml ])
+    ++ stdenv.lib.optionals pythonSupport (with ps;[ pybindgen pygccxml ])
   );
 in
 stdenv.mkDerivation rec {
+  pname = "ns-3";
+  version = "30";
 
-  name = "ns-3.${version}";
-  version = "28";
-
-  # the all in one https://www.nsnam.org/release/ns-allinone-3.27.tar.bz2;
-  # fetches everything (netanim, etc), this package focuses on ns3-core
-  src = fetchFromGitHub {
-    owner  = "nsnam";
-    repo   = "ns-3-dev-git";
-    rev    = name;
-    sha256 = "17kzfjpgw2mvyx1c9bxccnvw67jpk09fxmcnlkqx9xisk10qnhng";
+  src = fetchFromGitLab {
+    owner = "nsnam";
+    repo   = "ns-3-dev";
+    rev    = "ns-3.${version}";
+    sha256 = "0smdi3gglmafpc7a20hj2lbmwks3d5fpsicpn39lmm3svazw0bvp";
   };
 
   nativeBuildInputs = [ wafHook ];
-  # ncurses is a hidden dependency of waf when checking python
-  buildInputs = lib.optionals generateBindings [ castxml ncurses ]
-    ++ stdenv.lib.optional enableDoxygen [ doxygen graphviz imagemagick ]
-    ++ stdenv.lib.optional withManual [ dia tetex ghostscript texlive.combined.scheme-medium ];
 
-  propagatedBuildInputs = [ gcc6 pythonEnv ];
+  outputs = [ "out" ] ++ lib.optional pythonSupport "py";
+
+  # ncurses is a hidden dependency of waf when checking python
+  buildInputs = lib.optionals pythonSupport [ castxml ncurses ]
+    ++ lib.optional enableDoxygen [ doxygen graphviz imagemagick ]
+    ++ lib.optional withManual [ dia tetex ghostscript texlive.combined.scheme-medium ];
+
+  propagatedBuildInputs = [ pythonEnv ];
 
   postPatch = ''
     patchShebangs doc/ns3_html_theme/get_version.sh
   '';
 
   wafConfigureFlags = with stdenv.lib; [
-      "--enable-modules=${stdenv.lib.concatStringsSep "," modules}"
+      "--enable-modules=${concatStringsSep "," modules}"
       "--with-python=${pythonEnv.interpreter}"
   ]
   ++ optional (build_profile != null) "--build-profile=${build_profile}"
-  ++ optional generateBindings [  ]
   ++ optional withExamples " --enable-examples "
   ++ optional doCheck " --enable-tests "
   ;
 
+  doCheck = true;
+
   buildTargets = "build"
     + lib.optionalString enableDoxygen " doxygen"
     + lib.optionalString withManual "sphinx";
 
-  doCheck = true;
+  # to prevent fatal error: 'backward_warning.h' file not found
+  CXXFLAGS = "-D_GLIBCXX_PERMIT_BACKWARD_HASH";
 
-  # we need to specify the proper interpreter else ns3 can check against a
-  # different version even though we
-  checkPhase =  ''
-    ${pythonEnv.interpreter} ./test.py
+  postBuild = with stdenv.lib; let flags = concatStringsSep ";" (
+      optional enableDoxygen "./waf doxygen"
+      ++ optional withManual "./waf sphinx"
+    );
+    in "${flags}"
+  ;
+
+  postInstall = ''
+    moveToOutput "${pythonEnv.libPrefix}" "$py"
   '';
 
-  hardeningDisable = [ "fortify" ];
+  # we need to specify the proper interpreter else ns3 can check against a
+  # different version
+  checkPhase =  ''
+    ${pythonEnv.interpreter} ./test.py --nowaf
+  '';
 
-  meta = {
-    homepage = http://www.nsnam.org;
-    license = stdenv.lib.licenses.gpl3;
+  # strictoverflow prevents clang from discovering pyembed when bindings
+  hardeningDisable = [ "fortify" "strictoverflow"];
+
+  meta = with stdenv.lib; {
+    homepage = "http://www.nsnam.org";
+    license = licenses.gpl3;
     description = "A discrete time event network simulator";
-    platforms = with stdenv.lib.platforms; unix;
+    platforms = with platforms; unix;
+    maintainers = with maintainers; [ teto ];
   };
 }

pkgs/development/python-modules/botocore/default.nix

@@ -19,6 +19,8 @@ buildPythonPackage rec {
     sha256 = "19ls7hdmcaqrrq8przqy05s8chsy8315ic2zg185k6m64pvr0qhd";
   };
 
+  outputs = [ "out" "dev" ];
+
   propagatedBuildInputs = [
     dateutil
     jmespath

pkgs/development/python-modules/cairocffi/default.nix

@@ -19,8 +19,8 @@
 }@args:
 
 import ./generic.nix ({
-  version = "1.0.2";
-  sha256 = "01ac51ae12c4324ca5809ce270f9dd1b67f5166fe63bd3e497e9ea3ca91946ff";
+  version = "1.1.0";
+  sha256 = "1nq53f5jipgy9jgyfxp43j40qfbmrhgn1cj8bp5rrb3liy3wbh7i";
   dlopen_patch = ./dlopen-paths.patch;
   disabled = pythonOlder "3.5";
   inherit withXcffib;

pkgs/development/python-modules/cairocffi/dlopen-paths.patch

@@ -1,46 +1,61 @@
-commit 0435bc2577d4b18f54b78b2f5185abb2b2005982
-Author: Alexander V. Nikolaev <avn@avnik.info>
-Date:   Sat Feb 6 08:09:06 2016 +0200
+Patch dlopen() to allow direct paths to all required libs
 
-    Patch dlopen() to allow direct paths to all required libs
+This is an update of the patch submitted in
+https://github.com/NixOS/nixpkgs/commit/b13e44e094989d3a902f8c73b22e8d3c0cc7acf4
+by Alexander V. Nikolaev <avn@avnik.info>
 
-    This patch is NixOS specific
+---
+ cairocffi/__init__.py | 34 ++++++++++++++++------------------
+ 1 file changed, 16 insertions(+), 18 deletions(-)
 
 diff --git a/cairocffi/__init__.py b/cairocffi/__init__.py
-index 6061973..3538a58 100644
+index 307d58c..43c29e3 100644
 --- a/cairocffi/__init__.py
 +++ b/cairocffi/__init__.py
-@@ -21,19 +21,22 @@ VERSION = __version__ = (Path(__file__).parent / 'VERSION').read_text().strip()
- version = '1.16.0'
- version_info = (1, 16, 0)
+@@ -21,28 +21,26 @@ VERSION = __version__ = (Path(__file__).parent / 'VERSION').read_text().strip()
+ version = '1.17.2'
+ version_info = (1, 17, 2)
 
-+# Use hardcoded soname, because ctypes.util use gcc/objdump which shouldn't be required for runtime
++# Use hardcoded soname, because ctypes.util use gcc/objdump which shouldn't be
++# required for runtime
 +_LIBS = {
 +    'cairo': '@cairo@/lib/libcairo@ext@',
 +    'glib-2.0': '@glib@/lib/libglib-2.0@ext@',
 +    'gobject-2.0': '@glib@/lib/libgobject-2.0@ext@',
 +    'gdk_pixbuf-2.0': '@gdk_pixbuf@/lib/libgdk_pixbuf-2.0@ext@',
 +}
++
 
--def dlopen(ffi, *names):
-+def dlopen(ffi, name, *names):
+ def dlopen(ffi, library_names, filenames):
      """Try various names for the same library, for different platforms."""
--    for name in names:
--        for lib_name in (name, 'lib' + name):
--            try:
--                path = ctypes.util.find_library(lib_name)
--                lib = ffi.dlopen(path or lib_name)
--                if lib:
--                    return lib
--            except OSError:
--                pass
--    raise OSError("dlopen() failed to load a library: %s" % ' / '.join(names))
-+    path = _LIBS.get(name, None)
-+    if path:
-+        lib = ffi.dlopen(path)
-+        if lib:
-+            return lib
-+    raise OSError("dlopen() failed to load a library: %s as %s" % (name, path))
+-    exceptions = []
+-
+     for library_name in library_names:
+-        library_filename = find_library(library_name)
+-        if library_filename:
+-            filenames = (library_filename,) + filenames
+-        else:
+-            exceptions.append(
+-                'no library called "{}" was found'.format(library_name))
+-
+-    for filename in filenames:
+-        try:
+-            return ffi.dlopen(filename)
+-        except OSError as exception:  # pragma: no cover
+-            exceptions.append(exception)
+-
+-    error_message = '\n'.join(  # pragma: no cover
+-        str(exception) for exception in exceptions)
+-    raise OSError(error_message)  # pragma: no cover
++        path = _LIBS.get(library_name, None)
++        if path:
++            lib = ffi.dlopen(path)
++            if lib:
++                return lib
++
++    raise OSError("dlopen() failed to load a library: %s as %s" % (library_name, path))
 
 
- cairo = dlopen(ffi, 'cairo', 'cairo-2', 'cairo-gobject-2', 'cairo.so.2')
+ cairo = dlopen(
+--
+2.19.2

pkgs/development/python-modules/dynd/default.nix

@@ -26,6 +26,8 @@ buildPythonPackage rec {
     substituteInPlace setup.py --replace "'--always', '--match', 'v*']).decode('ascii').strip('\n')" ""
   '';
 
+  dontUseCmakeConfigure = true;
+
   # Python 3 works but has a broken import test that I couldn't
   # figure out.
   doCheck = !isPy3k;

pkgs/development/python-modules/s3transfer/default.nix

@@ -21,7 +21,7 @@ buildPythonPackage rec {
     sha256 = "f23d5cb7d862b104401d9021fc82e5fa0e0cf57b7660a1331425aab0c691d021";
   };
 
-  foo = 1;
+  outputs = [ "out" "dev" ];
 
   propagatedBuildInputs =
     [ botocore

pkgs/development/python-modules/urllib3/default.nix

@@ -11,6 +11,8 @@ buildPythonPackage rec {
     sha256 = "2393a695cd12afedd0dcb26fe5d50d0cf248e5a66f75dbd89a3d4eb333a61af4";
   };
 
+  outputs = [ "out" "dev" ];
+
   NOSE_EXCLUDE = stdenv.lib.concatStringsSep "," [
     "test_headers" "test_headerdict" "test_can_validate_ip_san" "test_delayed_body_read_timeout"
     "test_timeout_errors_cause_retries" "test_select_multiple_interrupts_with_event"

pkgs/misc/vim-plugins/generated.nix

@@ -1122,6 +1122,17 @@ let
     };
   };
 
+  float-preview-nvim = buildVimPluginFrom2Nix {
+    pname = "float-preview-nvim";
+    version = "2019-04-07";
+    src = fetchFromGitHub {
+      owner = "ncm2";
+      repo = "float-preview.nvim";
+      rev = "c5431b6d9bd4a8002f1a3eec42e9458ef4453ff3";
+      sha256 = "0ylrp0pmg822m7zp7dhyhmb05zbiy4gbq40l4whs249v0v4s9vyd";
+    };
+  };
+
   floobits-neovim = buildVimPluginFrom2Nix {
     pname = "floobits-neovim";
     version = "2018-08-01";

pkgs/misc/vim-plugins/vim-plugin-names

@@ -239,6 +239,7 @@ nathanaelkane/vim-indent-guides
 nathangrigg/vim-beancount
 navicore/vissort.vim
 nbouscal/vim-stylish-haskell
+ncm2/float-preview.nvim
 ncm2/ncm2
 ncm2/ncm2-bufword
 ncm2/ncm2-jedi

pkgs/os-specific/linux/rtl8812au/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, kernel, bc }:
+{ stdenv, fetchFromGitHub, kernel, bc, nukeReferences }:
 
 stdenv.mkDerivation rec {
   name = "rtl8812au-${kernel.version}-${version}";
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
     sha256 = "1fy0f8ihxd0i5kr8gmky8v8xl0ns6bhxfdn64c97c5irzdvg37sr";
   };
 
-  nativeBuildInputs = [ bc ];
+  nativeBuildInputs = [ bc nukeReferences ];
   buildInputs = kernel.moduleBuildDependencies;
 
   hardeningDisable = [ "pic" "format" ];
@@ -27,6 +27,10 @@ stdenv.mkDerivation rec {
     mkdir -p "$out/lib/modules/${kernel.modDirVersion}/kernel/net/wireless/"
   '';
 
+  postInstall = ''
+    nuke-refs $out/lib/modules/*/kernel/net/wireless/*.ko
+  '';
+
   meta = with stdenv.lib; {
     description = "Driver for Realtek 802.11ac, rtl8812au, provides the 8812au mod";
     homepage = https://github.com/zebulon2/rtl8812au-driver-5.2.20;

pkgs/os-specific/linux/rtl8821au/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, kernel, bc }:
+{ stdenv, fetchFromGitHub, kernel, bc, nukeReferences }:
 
 stdenv.mkDerivation rec {
   name = "rtl8821au-${kernel.version}-${version}";
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
     sha256 = "1kmdxgbh0s0v9809kdsi39p0jbm5cf10ivy40h8qj9hn70g1gw8q";
   };
 
-  nativeBuildInputs = [ bc ];
+  nativeBuildInputs = [ bc nukeReferences ];
   buildInputs = kernel.moduleBuildDependencies;
 
   hardeningDisable = [ "pic" "format" ];
@@ -30,6 +30,10 @@ stdenv.mkDerivation rec {
     mkdir -p "$out/lib/modules/${kernel.modDirVersion}/kernel/net/wireless/"
   '';
 
+  postInstall = ''
+    nuke-refs $out/lib/modules/*/kernel/net/wireless/*.ko
+  '';
+
   meta = with stdenv.lib; {
     description = "rtl8821AU, rtl8812AU and rtl8811AU chipset driver with firmware";
     homepage = https://github.com/zebulon2/rtl8812au;

pkgs/os-specific/linux/rtlwifi_new/default.nix

@@ -6,13 +6,13 @@ let modDestDir = "$out/lib/modules/${kernel.modDirVersion}/kernel/drivers/net/wi
 
 in stdenv.mkDerivation rec {
   pname = "rtlwifi_new";
-  version = "2018-02-17";
+  version = "2019-08-21";
 
   src = fetchFromGitHub {
     owner = "lwfinger";
     repo = "rtlwifi_new";
-    rev = "0588ac0cc5f530e7764705416370b70d3c2afedc";
-    sha256 = "1vs8rfw19lcs04bapa97zlnl5x0kf02sdw5ik0hdm27wgk0z969m";
+    rev = "a108e3de87c2ed30b71c3c4595b79ab7a2f9e348";
+    sha256 = "15kjs9i9vvmn1cdzccd5cljf3m45r4ssm65klkj2fdkf3kljj38k";
   };
 
   hardeningDisable = [ "pic" "format" ];

pkgs/servers/consul/default.nix

@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   pname = "consul";
-  version = "1.6.0";
+  version = "1.6.1";
   rev = "v${version}";
 
   goPackagePath = "github.com/hashicorp/consul";
@@ -19,7 +19,7 @@ buildGoPackage rec {
     owner = "hashicorp";
     repo = pname;
     inherit rev;
-    sha256 = "16rngyv9dp19gjbjwfvnmlfxbq67fxs55hgvvcyn9mplm1j0bb52";
+    sha256 = "00dvvxi7y80v2b6wzwyfzhxv1ksnl1m0nmdjl98dhq5ikb0v7p28";
   };
 
   preBuild = ''

pkgs/servers/dante/default.nix

@@ -11,15 +11,15 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ pam libkrb5 cyrus_sasl miniupnpc ];
 
-  configureFlags = [
-    "--with-libc=libc.so.6"
-  ];
+  configureFlags = ["--with-libc=libc${stdenv.targetPlatform.extensions.sharedLibrary}"];
+
+  dontAddDisableDepTrack = stdenv.isDarwin;
 
   meta = with stdenv.lib; {
     description = "A circuit-level SOCKS client/server that can be used to provide convenient and secure network connectivity.";
     homepage    = "https://www.inet.no/dante/";
     maintainers = [ maintainers.arobyn ];
     license     = licenses.bsdOriginal;
-    platforms   = platforms.linux;
+    platforms   = platforms.linux ++ platforms.darwin;
   };
 }

pkgs/tools/admin/awscli/default.nix

@@ -38,7 +38,7 @@ in py.pkgs.buildPythonApplication rec {
   # No tests included
   doCheck = false;
 
-  propagatedBuildInputs = with py.pkgs; [
+  pythonPath = with py.pkgs; [
     botocore
     bcdoc
     s3transfer
@@ -49,6 +49,10 @@ in py.pkgs.buildPythonApplication rec {
     pyyaml
     groff
     less
+    urllib3
+    dateutil
+    jmespath
+    futures
   ];
 
   postInstall = ''

pkgs/tools/admin/pulumi/default.nix

@@ -4,17 +4,17 @@ with lib;
 
 let
 
-  version = "0.17.27";
+  version = "1.1.0";
 
   # switch the dropdown to “manual” on https://pulumi.io/quickstart/install.html # TODO: update script
   pulumiArchPackage = {
     x86_64-linux = {
       url = "https://get.pulumi.com/releases/sdk/pulumi-v${version}-linux-x64.tar.gz";
-      sha256 = "13ajgc8x5l3s93hmz6jg88if10bvd319jmkljy4n26zdp30vfqmw";
+      sha256 = "1r498pxsjdj9mhdzh9vh4nw8fcjxfga44xlg43b0yakkgrp7c224";
     };
     x86_64-darwin = {
       url = "https://get.pulumi.com/releases/sdk/pulumi-v${version}-darwin-x64.tar.gz";
-      sha256 = "0chpbnz2s4icwgmfq6kl8blz5mg4lpdqg061w3nh0p04adpgrn48";
+      sha256 = "02nr5yxn5aqgbwrnl4shgd6rh4n4v8giqki4qkbgx74xf3bbwihg";
     };
   };
 

pkgs/tools/misc/yubikey-personalization-gui/default.nix

@@ -1,4 +1,5 @@
-{ stdenv, fetchurl, mkDerivation, pkgconfig, yubikey-personalization, qtbase, qmake, libyubikey }:
+{ stdenv, fetchurl, mkDerivation, pkgconfig, qtbase, qmake, imagemagick
+, libyubikey, yubikey-personalization }:
 
 mkDerivation rec {
   name = "yubikey-personalization-gui-3.1.25";
@@ -8,12 +9,27 @@ mkDerivation rec {
     sha256 = "1knyv5yss8lhzaff6jpfqv12fjf1b8b21mfxzx3qi0hw4nl8n2v8";
   };
 
-  nativeBuildInputs = [ pkgconfig qmake ];
+  nativeBuildInputs = [ pkgconfig qmake imagemagick ];
   buildInputs = [ yubikey-personalization qtbase libyubikey ];
 
   installPhase = ''
-    mkdir -p $out/bin
-    cp build/release/yubikey-personalization-gui $out/bin
+    install -D -m0755 build/release/yubikey-personalization-gui "$out/bin/yubikey-personalization-gui"
+    install -D -m0644 resources/lin/yubikey-personalization-gui.1 "$out/share/man/man1/yubikey-personalization-gui.1"
+
+    # Desktop files
+    install -D -m0644 resources/lin/yubikey-personalization-gui.desktop "$out/share/applications/yubikey-personalization-gui.desktop"
+    install -D -m0644 resources/lin/yubikey-personalization-gui.desktop "$out/share/pixmaps/yubikey-personalization-gui.xpm"
+
+    # Icons
+    install -D -m0644 resources/lin/yubikey-personalization-gui.png "$out/share/icons/hicolor/128x128/apps/yubikey-personalization-gui.png"
+    for SIZE in 16 24 32 48 64 96; do
+      # set modify/create for reproducible builds
+      convert -scale ''${SIZE} +set date:create +set date:modify \
+        resources/lin/yubikey-personalization-gui.png \
+        yubikey-personalization-gui.png
+
+      install -D -m0644 yubikey-personalization-gui.png "$out/share/icons/hicolor/''${SIZE}x''${SIZE}/apps/yubikey-personalization-gui.png"
+    done
   '';
 
   meta = with stdenv.lib; {

pkgs/tools/networking/httpie/default.nix

@@ -1,17 +1,35 @@
-{ stdenv, fetchurl, python3Packages }:
+{ stdenv, fetchFromGitHub, python3Packages, docutils, }:
 
 python3Packages.buildPythonApplication rec {
   pname = "httpie";
   version = "1.0.3";
 
-  src = python3Packages.fetchPypi {
-    inherit pname version;
-    sha256 = "103fcigpxf4nqmrdqjnyz7d9n4n16906slwmmqqc0gkxv8hnw6vd";
+  src = fetchFromGitHub {
+    owner = "jakubroztocil";
+    repo = "httpie";
+    rev = version;
+    sha256 = "0y30sp0x3nmgzi4dqw1rc3705hnn36ij0zlyyx7g6fqdq8bd8p5q";
   };
 
   propagatedBuildInputs = with python3Packages; [ pygments requests setuptools ];
+  dontUseSetuptoolsCheck = true;
 
-  doCheck = false;
+  disabledTests = [
+    "test_current_version"
+    "test_error"
+  ];
+
+  checkInputs = with python3Packages; [
+    mock
+    pytest
+    pytest-httpbin
+    pytestCheckHook
+  ];
+
+  # the tests call rst2pseudoxml.py from docutils
+  preCheck = ''
+    export PATH=${docutils}/bin:$PATH
+  '';
 
   meta = {
     description = "A command line HTTP client whose goal is to make CLI human-friendly";

pkgs/tools/networking/telepresence/default.nix

@@ -8,22 +8,22 @@ let
       url = "https://github.com/datawire/sshuttle.git";
       rev = "32226ff14d98d58ccad2a699e10cdfa5d86d6269";
       sha256 = "1q20lnljndwcpgqv2qrf1k0lbvxppxf98a4g5r9zd566znhcdhx3";
-      leaveDotGit = true;
     };
 
-    buildInputs = p.buildInputs ++ [ git ];
+    nativeBuildInputs = p.nativeBuildInputs ++ [ git ];
+
     postPatch = "rm sshuttle/tests/client/test_methods_nat.py";
     postInstall = "mv $out/bin/sshuttle $out/bin/sshuttle-telepresence";
   });
 in pythonPackages.buildPythonPackage rec {
   pname = "telepresence";
-  version = "0.93";
+  version = "0.101";
 
   src = fetchFromGitHub {
     owner = "datawire";
     repo = "telepresence";
     rev = version;
-    sha256 = "1x8yjcqj8v35a5pxy2rxaixbznb4vk8ll958b4l46gnkfxf1kh1d";
+    sha256 = "1rxq22vcrw29682g7pdcwcjyifcg61z8y4my1di7yw731aldk274";
   };
 
   buildInputs = [ makeWrapper ];

pkgs/top-level/all-packages.nix

@@ -23525,7 +23525,7 @@ in
 
   netlogo = callPackage ../applications/science/misc/netlogo { };
 
-  ns-3 = callPackage ../development/libraries/science/networking/ns3 { };
+  ns-3 = callPackage ../development/libraries/science/networking/ns-3 { python = python3; };
 
   root = callPackage ../applications/science/misc/root {
     inherit (darwin.apple_sdk.frameworks) Cocoa OpenGL;