From 8ebf0eefbeba389f675f535cf959624e024ab496 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 6 Jun 2019 09:10:34 -0700
Subject: [PATCH] star: 2.7.0f -> 2.7.1a (#62577)

* star: 2.7.0f -> 2.7.1a

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions

* star: cleanup
---
 .../science/biology/star/default.nix          | 29 +++++++++++--------
 1 file changed, 17 insertions(+), 12 deletions(-)

diff --git a/pkgs/applications/science/biology/star/default.nix b/pkgs/applications/science/biology/star/default.nix
index 2f21da02fb00..f32dca86bdf5 100644
--- a/pkgs/applications/science/biology/star/default.nix
+++ b/pkgs/applications/science/biology/star/default.nix
@@ -1,32 +1,37 @@
 { stdenv, fetchFromGitHub, zlib }:
 
 stdenv.mkDerivation rec {
-  name = "star-${version}";
-  version = "2.7.0f";
+  pname = "star";
+  version = "2.7.1a";
 
   src = fetchFromGitHub {
     repo = "STAR";
     owner = "alexdobin";
     rev = version;
-    sha256 = "0ndqlyimf7xf00nghn8awg12pw985ixghiypg98r2gdm7pscgd0i";
+    sha256 = "0n6g4s4hgw7qygs1z97j7a2dgz8gfaa4cv5pjvvvmarvk0x07hyg";
   };
 
   sourceRoot = "source/source";
-  
-  postPatch = "sed 's:/bin/rm:rm:g' -i Makefile";
-  
+
+  postPatch = ''
+    substituteInPlace Makefile --replace "/bin/rm" "rm"
+  '';
+
   buildInputs = [ zlib ];
-  
-  buildPhase = "make STAR STARlong";
+
+  buildFlags = [ "STAR" "STARlong" ];
+
+  enableParallelBuilding = true;
 
   installPhase = ''
-    mkdir -p $out/bin
-    cp STAR STARlong $out/bin
+    runHook preInstall
+    install -D STAR STARlong -t $out/bin
+    runHook postInstall
   '';
-  
+
   meta = with stdenv.lib; {
     description = "Spliced Transcripts Alignment to a Reference";
-    homepage = https://github.com/alexdobin/STAR;
+    homepage = "https://github.com/alexdobin/STAR";
     license = licenses.gpl3Plus;
     platforms = platforms.linux;
     maintainers = [ maintainers.arcadio ];