From 8d0af26e1de55f504766b3c4d92b69121a60851e Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Sat, 6 Feb 2021 19:02:09 +0000
Subject: [PATCH] blast: 2.10.0 -> 2.11.0

Fixes build with gcc10.
---
 pkgs/applications/science/biology/blast/default.nix      | 9 +++++----
 .../science/biology/blast/no_slash_bin.patch             | 8 +-------
 2 files changed, 6 insertions(+), 11 deletions(-)

diff --git a/pkgs/applications/science/biology/blast/default.nix b/pkgs/applications/science/biology/blast/default.nix
index 6fd061f1402d..877b5b7d34c0 100644
--- a/pkgs/applications/science/biology/blast/default.nix
+++ b/pkgs/applications/science/biology/blast/default.nix
@@ -1,12 +1,12 @@
-{ lib, stdenv, fetchurl, zlib, bzip2, perl, cpio, gawk, coreutils, ApplicationServices }:
+{ lib, stdenv, buildPackages, fetchurl, zlib, bzip2, perl, cpio, gawk, coreutils, ApplicationServices }:
 
 stdenv.mkDerivation rec {
   pname = "blast";
-  version = "2.10.0";
+  version = "2.11.0";
 
   src = fetchurl {
-    url = "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-src.tar.gz";
-    sha256 = "09nry5knj5hhxpn0a5ww1gb1704grd4r1y7adbjl6kqwq37dkk9s";
+    url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-src.tar.gz";
+    sha256 = "0m0r9vkw631ky1za1wilsfk9k9spwqh22nkrb9a57rbwmrc1i3nq";
   };
 
   sourceRoot = "ncbi-blast-${version}+-src/c++";
@@ -75,6 +75,7 @@ stdenv.mkDerivation rec {
         --replace /bin/date ${coreutils}/bin/date
   '';
 
+  depsBuildBuild = [ buildPackages.stdenv.cc ];
   nativeBuildInputs = [ perl ];
 
   # perl is necessary in buildInputs so that installed perl scripts get patched
diff --git a/pkgs/applications/science/biology/blast/no_slash_bin.patch b/pkgs/applications/science/biology/blast/no_slash_bin.patch
index 9b78ac579264..851e37fa905d 100644
--- a/pkgs/applications/science/biology/blast/no_slash_bin.patch
+++ b/pkgs/applications/science/biology/blast/no_slash_bin.patch
@@ -171,14 +171,8 @@ diff -u --recursive ncbi-blast-2.9.0+-src/scripts/common/impl/strip_for_install.
  GREP     = @GREP@
 --- ncbi-blast-2.9.0+-src/src/build-system/configure	2019-03-05 00:49:08.000000000 +0800
 +++ ncbi-blast-2.9.0+-src.patched/src/build-system/configure	2019-05-15 16:55:40.711795042 +0800
-@@ -10417,10 +10417,6 @@
- echo "${ECHO_T}no, using $LN_S" >&6; }
- fi
- 
+@@ -10417,4 +10417,0 @@
 -case "$LN_S" in
 -    /*) ;;
 -    * ) LN_S=/bin/$LN_S ;;
 -esac
- 
- if test -n "$ac_tool_prefix"; then
-   # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args.