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Merge pull request #13870 from NixOS/python-wip
Python: update pandas, and other packages
This commit is contained in:
Frederik Rietdijk
commit
78ad3a1658
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@ -6316,12 +6316,12 @@ in modules // {
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};
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jupyter_console = buildPythonPackage rec {
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version = "4.1.0";
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version = "4.1.1";
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name = "jupyter_console-${version}";
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src = pkgs.fetchurl {
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url = "https://pypi.python.org/packages/source/j/jupyter_console/${name}.tar.gz";
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sha256 = "3f9703b632e38d68713fc2ea1f546edc4db2a8f925c94b6dd91a8d0c13816ce9";
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sha256 = "1qsa9h7db8qzd4hg9l5mfl8299y4i7jkd6p3vpksk3r5ip8wym6p";
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};
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buildInputs = with self; [ nose ];
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@ -10505,12 +10505,12 @@ in modules // {
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};
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ipython = buildPythonPackage rec {
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version = "4.0.3";
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version = "4.1.2";
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name = "ipython-${version}";
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src = pkgs.fetchurl {
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url = "https://pypi.python.org/packages/source/i/ipython/${name}.tar.gz";
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sha256 = "3a928f59e8ac8dd97858c28390867c87c09510f1f8bbe97e4e9c6b036eb84fc0";
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sha256 = "14hnf3m087z39ndn5irj1ficc6l197bmdj6fpvz8bwi7la99cbq5";
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};
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prePatch = stdenv.lib.optionalString stdenv.isDarwin ''
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@ -13395,17 +13395,20 @@ in modules // {
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};
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openpyxl = buildPythonPackage rec {
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version = "2.3.0";
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version = "2.3.3";
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name = "openpyxl-${version}";
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src = pkgs.fetchhg {
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url = "https://bitbucket.org/openpyxl/openpyxl";
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rev = "${version}";
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sha256 = "1iisk6rfh9h5xb411kfyzkcab6fdnsx573i0d83wfn4csk4p3p4d";
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src = pkgs.fetchurl {
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url = "https://pypi.python.org/packages/source/o/openpyxl/${name}.tar.gz";
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sha256 = "1zigyvsq45izkhr1h5gisgi0ag5dm6kz09f01c2cgdfav1bl3mlk";
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};
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buildInputs = with self; [ pytest ];
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propagatedBuildInputs = with self; [ jdcal et_xmlfile ];
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propagatedBuildInputs = with self; [ jdcal et_xmlfile lxml ];
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# Tests are not included in archive.
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# https://bitbucket.org/openpyxl/openpyxl/issues/610
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doCheck = false;
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meta = {
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description = "A Python library to read/write Excel 2007 xlsx/xlsm files";
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@ -14785,7 +14788,9 @@ in modules // {
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};
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};
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pandas = let
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pandas = self.pandas_18;
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pandas_17 = let
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inherit (pkgs.stdenv.lib) optional optionalString;
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inherit (pkgs.stdenv) isDarwin;
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in buildPythonPackage rec {
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@ -14800,16 +14805,14 @@ in modules // {
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buildInputs = with self; [ nose ] ++ optional isDarwin pkgs.libcxx;
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propagatedBuildInputs = with self; [
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dateutil
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numpy
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scipy
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scipy_0_17
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numexpr
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pytz
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xlrd
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bottleneck
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sqlalchemy
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lxml
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# Disabling this because an upstream dependency, pep8, is broken on v3.5.
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(if isPy35 then null else html5lib)
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html5lib
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modules.sqlite3
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beautifulsoup4
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] ++ optional isDarwin pkgs.darwin.locale; # provides the locale command
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@ -14845,7 +14848,7 @@ in modules // {
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runHook preCheck
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# The flag `-A 'not network'` will disable tests that use internet.
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# The `-e` flag disables a few problematic tests.
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${python.executable} setup.py nosetests -A 'not network' --stop \
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${python.executable} setup.py nosetests -A 'not slow and not network' --stop \
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-e '${concatStringsSep "|" testsToSkip}' --verbosity=3
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runHook postCheck
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@ -14860,13 +14863,93 @@ in modules // {
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};
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};
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pandas_18 = let
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inherit (pkgs.stdenv.lib) optional optionalString;
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inherit (pkgs.stdenv) isDarwin;
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in buildPythonPackage rec {
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name = "pandas-${version}";
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version = "0.18.0";
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src = pkgs.fetchurl {
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url = "https://pypi.python.org/packages/source/p/pandas/${name}.tar.gz";
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sha256 = "050qw0ap5bhyv5flp78x3lcq1dlminl3xaj6kbrm0jqmx0672xf9";
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};
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LC_ALL = "en_US.UTF-8";
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buildInputs = with self; [ nose pkgs.glibcLocales ] ++ optional isDarwin pkgs.libcxx;
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propagatedBuildInputs = with self; [
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dateutil
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scipy
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numexpr
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pytz
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xlrd
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bottleneck
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sqlalchemy
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lxml
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html5lib
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modules.sqlite3
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beautifulsoup4
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openpyxl
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xlwt
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] ++ optional isDarwin pkgs.darwin.locale; # provides the locale command
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# For OSX, we need to add a dependency on libcxx, which provides
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# `complex.h` and other libraries that pandas depends on to build.
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patchPhase = optionalString isDarwin ''
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cpp_sdk="${pkgs.libcxx}/include/c++/v1";
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echo "Adding $cpp_sdk to the setup.py common_include variable"
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substituteInPlace setup.py \
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--replace "['pandas/src/klib', 'pandas/src']" \
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"['pandas/src/klib', 'pandas/src', '$cpp_sdk']"
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# disable clipboard tests since pbcopy/pbpaste are not open source
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substituteInPlace pandas/io/tests/test_clipboard.py \
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--replace pandas.util.clipboard no_such_module \
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--replace OSError ImportError
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'';
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# The flag `-A 'not network'` will disable tests that use internet.
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# The `-e` flag disables a few problematic tests.
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# https://github.com/pydata/pandas/issues/11169
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# https://github.com/pydata/pandas/issues/11287
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# The test_sql checks fail specifically on python 3.5; see here:
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# https://github.com/pydata/pandas/issues/11112
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checkPhase = let
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testsToSkip = [];
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in ''
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runHook preCheck
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# The flag `-A 'not network'` will disable tests that use internet.
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# The `-e` flag disables a few problematic tests.
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${python.executable} setup.py nosetests -A 'not slow and not network' \
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--verbosity=3
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runHook postCheck
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'';
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meta = {
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homepage = "http://pandas.pydata.org/";
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description = "Python Data Analysis Library";
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license = licenses.bsd3;
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maintainers = with maintainers; [ raskin fridh ];
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platforms = platforms.unix;
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};
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};
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xlrd = buildPythonPackage rec {
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name = "xlrd-${version}";
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version = "0.9.4";
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src = pkgs.fetchurl {
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url = "https://pypi.python.org/packages/source/x/xlrd/xlrd-${version}.tar.gz";
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sha256 = "8e8d3359f39541a6ff937f4030db54864836a06e42988c452db5b6b86d29ea72";
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};
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buildInputs = with self; [ nose ];
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checkPhase = ''
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nosetests -v
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'';
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};
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bottleneck = buildPythonPackage rec {
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@ -22460,11 +22543,11 @@ in modules // {
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xarray = buildPythonPackage rec {
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name = "xarray-${version}";
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version = "0.7.0";
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version = "0.7.1";
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src = pkgs.fetchurl {
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url = "https://pypi.python.org/packages/source/x/xarray/${name}.tar.gz";
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sha256 = "b1562e8e2c61f1c3587d557ff48d2bc7be36574d6a8e86f11186c356bdd794cf";
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sha256 = "1swcpq8x0p5pp94r9j4hr2anz1rqh7fnqax16xn9xsgrikdjipj5";
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};
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buildInputs = with self; [ pytest ];
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@ -22482,6 +22565,27 @@ in modules // {
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};
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};
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xlwt = buildPythonPackage rec {
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name = "xlwt-${version}";
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version = "1.0.0";
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src = pkgs.fetchurl {
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url = "https://pypi.python.org/packages/source/x/xlwt/${name}.tar.gz";
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sha256 = "1y8w5imsicp01gn749qhw6j0grh9y19zz57ribwaknn8xqwjjhxc";
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};
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buildInputs = with self; [ nose ];
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checkPhase = ''
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nosetests -v
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'';
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meta = {
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description = "Library to create spreadsheet files compatible with MS";
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homepage = https://github.com/python-excel/xlwt;
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license = with licenses; [ bsdOriginal bsd3 lgpl21 ];
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};
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};
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youtube-dl = callPackage ../tools/misc/youtube-dl {
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# Release versions don't need pandoc because the formatted man page
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# is included in the tarball.
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