Merge pull request #42879 from iimog/fix-rhdf5

rPackages.rhdf5: fix installation

pkgs/development/r-modules/default.nix

@@ -749,6 +749,10 @@ let
       patches = [ ./patches/BayesXsrc.patch ];
     });
 
+    rhdf5 = old.rhdf5.overrideDerivation (attrs: {
+      patches = [ ./patches/rhdf5.patch ];
+    });
+
     rJava = old.rJava.overrideDerivation (attrs: {
       preConfigure = ''
         export JAVA_CPPFLAGS=-I${pkgs.jdk}/include/

pkgs/development/r-modules/patches/rhdf5.patch

@@ -0,0 +1,12 @@
+diff --git a/configure b/configure
+index e3e21e8..3d947b6 100755
+--- a/configure
++++ b/configure
+@@ -2859,6 +2859,7 @@ fi;
+ 
+ echo "building the bundled hdf5 library...";
+ cd ${BASEPBNAME};
++sed -i 's#/bin/mv#mv#' configure
+ ./configure  --with-pic --enable-shared=no CXX="${CXX}" CXXFLAGS="${CXXFLAGS}" CC="${CC}" CFLAGS="${CFLAGS}" F77="${F77}"
+ $MAKE lib
+ cd ../../