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Merge pull request #105611 from bcdarwin/mne-python

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Sandro 2020-12-07 12:19:44 +01:00 committed by GitHub
parent 58e11d7b5d 05a7ac3b2a
commit 62aaf352e7
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2 changed files with 61 additions and 0 deletions
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59
pkgs/development/python-modules/mne-python/default.nix Normal file
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@ -0,0 +1,59 @@
{ lib
, buildPythonPackage
, fetchFromGitHub
, isPy27
, numpy
, scipy
, pytestCheckHook
, pytestcov
, pytest-timeout
, h5py
, matplotlib
, nibabel
, pandas
, scikitlearn
}:
buildPythonPackage rec {
pname = "mne-python";
version = "0.21.2";
disabled = isPy27;
# PyPI dist insufficient to run tests
src = fetchFromGitHub {
owner = "mne-tools";
repo = pname;
rev = "v${version}";
sha256 = "18nfdbkffmxzkkbp3d4w8r2kfi0sxip3hy997d3mx6dy74jc7nmg";
};
propagatedBuildInputs = [ numpy scipy ];
# all tests pass, but Pytest hangs afterwards - probably some thread hasn't terminated
doCheck = false;
checkInputs = [
pytestCheckHook
pytestcov
pytest-timeout
h5py
matplotlib
nibabel
pandas
scikitlearn
];
preCheck = ''
export HOME=$TMP
export MNE_SKIP_TESTING_DATASET_TESTS=true
export MNE_SKIP_NETWORK_TESTS=1
'';
pythonImportsCheck = [ "mne" ];
meta = with lib; {
homepage = "https://mne.tools";
description = "Magnetoencephelography and electroencephalography in Python";
license = licenses.bsd3;
maintainers = with maintainers; [ bcdarwin ];
};
}

2
pkgs/top-level/python-packages.nix
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@ -3832,6 +3832,8 @@ in {
mnemonic = callPackage ../development/python-modules/mnemonic { };
mne-python = callPackage ../development/python-modules/mne-python { };
mnist = callPackage ../development/python-modules/mnist { };
mocket = callPackage ../development/python-modules/mocket { };