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ocamlPackages.phylogenetics: unstable-2020-11-23 -> 0.0.0

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Ben Darwin 2021-11-11 17:48:02 -05:00 committed by Vincent Laporte
parent 4e61e1242c
commit 2d47affbfb
1 changed files with 34 additions and 14 deletions
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48
pkgs/development/ocaml-modules/phylogenetics/default.nix
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@ -1,30 +1,50 @@
{ lib, buildDunePackage, fetchFromGitHub, ppx_deriving
, alcotest, angstrom-unix, biocaml, gnuplot, gsl, lacaml, menhir, owl, printbox }:
{ lib
, buildDunePackage
, fetchurl
, ppx_deriving
, bppsuite
, alcotest
, angstrom-unix
, biocaml
, core
, gsl
, lacaml
, menhir
, menhirLib
, printbox
}:
buildDunePackage rec {
pname = "phylogenetics";
version = "unstable-2020-11-23";
version = "0.0.0";
useDune2 = true;
src = fetchFromGitHub {
owner = "biocaml";
repo = pname;
rev = "e6e10efa0a3a8fd61bf4ab69e91a09549cc1ded6";
sha256 = "0pmypzp0rvlpzm8zpbcfkphwnhrpyfwfv44kshvx2f8nslmksh8c";
src = fetchurl {
url = "https://github.com/biocaml/phylogenetics/releases/download/v${version}/${pname}-${version}.tbz";
sha256 = "sha256:0knfh2s0jfnsc0vsq5yw5xla7m7i98xd0qv512dyh3jhkh7m00l9";
};
minimumOCamlVersion = "4.08"; # e.g., uses Float.min
minimalOCamlVersion = "4.08";
checkInputs = [ alcotest ];
checkInputs = [ alcotest bppsuite ];
buildInputs = [ menhir ];
propagatedBuildInputs = [ angstrom-unix biocaml gnuplot gsl lacaml owl ppx_deriving printbox ];
propagatedBuildInputs = [
angstrom-unix
biocaml
core
gsl
lacaml
menhirLib
ppx_deriving
printbox
];
doCheck = false; # many tests require bppsuite
doCheck = true;
meta = with lib; {
inherit (src.meta) homepage;
description = "Bioinformatics library for Ocaml";
homepage = "https://github.com/biocaml/phylogenetics";
description = "Algorithms and datastructures for phylogenetics";
maintainers = [ maintainers.bcdarwin ];
license = licenses.cecill-b;
};