1
0
Fork 1
mirror of https://github.com/NixOS/nixpkgs.git synced 2024-11-21 13:10:33 +00:00

Merge pull request #79174 from cstich/julia-1.3.1

julia: 1.1 -> 1.3
This commit is contained in:
Michael Raskin 2020-02-18 08:03:25 +00:00 committed by GitHub
commit 2a52e5edd2
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
3 changed files with 200 additions and 0 deletions

View file

@ -0,0 +1,170 @@
{ stdenv, fetchurl, fetchzip, fetchFromGitHub
# build tools
, gfortran, m4, makeWrapper, patchelf, perl, which, python2
, cmake
# libjulia dependencies
, libunwind, readline, utf8proc, zlib
# standard library dependencies
, curl, fftwSinglePrec, fftw, gmp, libgit2, mpfr, openlibm, openspecfun, pcre2
# linear algebra
, openblas, arpack
# Darwin frameworks
, CoreServices, ApplicationServices
}:
with stdenv.lib;
# All dependencies must use the same OpenBLAS.
let
arpack_ = arpack;
in
let
arpack = arpack_.override { inherit openblas; };
in
let
majorVersion = "1";
minorVersion = "3";
maintenanceVersion = "1";
src_sha256 = "0q9a7yc3b235psrwl5ghyxgwly25lf8n818l8h6bkf2ymdbsv5p6";
version = "${majorVersion}.${minorVersion}.${maintenanceVersion}";
in
stdenv.mkDerivation rec {
pname = "julia";
inherit version;
src = fetchzip {
url = "https://github.com/JuliaLang/julia/releases/download/v${majorVersion}.${minorVersion}.${maintenanceVersion}/julia-${majorVersion}.${minorVersion}.${maintenanceVersion}-full.tar.gz";
sha256 = src_sha256;
};
prePatch = ''
export PATH=$PATH:${cmake}/bin
'';
patches = [
./use-system-utf8proc-julia-1.3.patch
# Julia recompiles a precompiled file if the mtime stored *in* the
# .ji file differs from the mtime of the .ji file. This
# doesn't work in Nix because Nix changes the mtime of files in
# the Nix store to 1. So patch Julia to accept mtimes of 1.
./allow_nix_mtime.patch
];
postPatch = ''
patchShebangs . contrib
for i in backtrace cmdlineargs; do
mv test/$i.jl{,.off}
touch test/$i.jl
done
rm stdlib/Sockets/test/runtests.jl && touch stdlib/Sockets/test/runtests.jl
rm stdlib/Distributed/test/runtests.jl && touch stdlib/Distributed/test/runtests.jl
sed -e 's/Invalid Content-Type:/invalid Content-Type:/g' -i ./stdlib/LibGit2/test/libgit2.jl
sed -e 's/Failed to resolve /failed to resolve /g' -i ./stdlib/LibGit2/test/libgit2.jl
'';
buildInputs = [
arpack fftw fftwSinglePrec gmp libgit2 libunwind mpfr
pcre2.dev openblas openlibm openspecfun readline utf8proc
zlib
]
++ stdenv.lib.optionals stdenv.isDarwin [CoreServices ApplicationServices]
;
nativeBuildInputs = [ curl gfortran m4 makeWrapper patchelf perl python2 which ];
makeFlags =
let
arch = head (splitString "-" stdenv.system);
march = { x86_64 = stdenv.hostPlatform.platform.gcc.arch or "x86-64"; i686 = "pentium4"; }.${arch}
or (throw "unsupported architecture: ${arch}");
# Julia requires Pentium 4 (SSE2) or better
cpuTarget = { x86_64 = "x86-64"; i686 = "pentium4"; }.${arch}
or (throw "unsupported architecture: ${arch}");
# Julia applies a lot of patches to its dependencies, so for now do not use the system LLVM
# https://github.com/JuliaLang/julia/tree/master/deps/patches
in [
"ARCH=${arch}"
"MARCH=${march}"
"JULIA_CPU_TARGET=${cpuTarget}"
"PREFIX=$(out)"
"prefix=$(out)"
"SHELL=${stdenv.shell}"
"USE_SYSTEM_BLAS=1"
"USE_BLAS64=${if openblas.blas64 then "1" else "0"}"
"LIBBLAS=-lopenblas"
"LIBBLASNAME=libopenblas"
"USE_SYSTEM_LAPACK=1"
"LIBLAPACK=-lopenblas"
"LIBLAPACKNAME=libopenblas"
"USE_SYSTEM_ARPACK=1"
"USE_SYSTEM_FFTW=1"
"USE_SYSTEM_GMP=1"
"USE_SYSTEM_LIBGIT2=1"
"USE_SYSTEM_LIBUNWIND=1"
"USE_SYSTEM_MPFR=1"
"USE_SYSTEM_OPENLIBM=1"
"USE_SYSTEM_OPENSPECFUN=1"
"USE_SYSTEM_PATCHELF=1"
"USE_SYSTEM_PCRE=1"
"PCRE_CONFIG=${pcre2.dev}/bin/pcre2-config"
"PCRE_INCL_PATH=${pcre2.dev}/include/pcre2.h"
"USE_SYSTEM_READLINE=1"
"USE_SYSTEM_UTF8PROC=1"
"USE_SYSTEM_ZLIB=1"
"USE_BINARYBUILDER=0"
];
LD_LIBRARY_PATH = makeLibraryPath [
arpack fftw fftwSinglePrec gmp libgit2 mpfr openblas openlibm
openspecfun pcre2
];
enableParallelBuilding = true;
doCheck = !stdenv.isDarwin;
checkTarget = "testall";
# Julia's tests require read/write access to $HOME
preCheck = ''
export HOME="$NIX_BUILD_TOP"
'';
preBuild = ''
sed -e '/^install:/s@[^ ]*/doc/[^ ]*@@' -i Makefile
sed -e '/[$](DESTDIR)[$](docdir)/d' -i Makefile
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
'';
postInstall = ''
# Symlink shared libraries from LD_LIBRARY_PATH into lib/julia,
# as using a wrapper with LD_LIBRARY_PATH causes segmentation
# faults when program returns an error:
# $ julia -e 'throw(Error())'
find $(echo $LD_LIBRARY_PATH | sed 's|:| |g') -maxdepth 1 -name '*.${if stdenv.isDarwin then "dylib" else "so"}*' | while read lib; do
if [[ ! -e $out/lib/julia/$(basename $lib) ]]; then
ln -sv $lib $out/lib/julia/$(basename $lib)
fi
done
'';
passthru = {
inherit majorVersion minorVersion maintenanceVersion;
site = "share/julia/site/v${majorVersion}.${minorVersion}";
};
meta = {
description = "High-level performance-oriented dynamical language for technical computing";
homepage = https://julialang.org/;
license = stdenv.lib.licenses.mit;
maintainers = with stdenv.lib.maintainers; [ raskin rob garrison ];
platforms = [ "i686-linux" "x86_64-linux" "x86_64-darwin" ];
broken = stdenv.isi686;
};
}

View file

@ -0,0 +1,24 @@
---
src/flisp/Makefile | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/flisp/Makefile b/src/flisp/Makefile
index d97075e..6bebca7 100644
--- a/src/flisp/Makefile
+++ b/src/flisp/Makefile
@@ -32,9 +32,9 @@ OBJS := $(SRCS:%.c=$(BUILDDIR)/%.o)
DOBJS := $(SRCS:%.c=$(BUILDDIR)/%.dbg.obj)
LLT_release := $(LLT_BUILDDIR)/libsupport.a
LLT_debug := $(LLT_BUILDDIR)/libsupport-debug.a
-LIBFILES_release := $(LLT_release) $(LIBUV) $(LIBUTF8PROC)
-LIBFILES_debug := $(LLT_debug) $(LIBUV) $(LIBUTF8PROC)
-LIBS :=
+LIBFILES_release := $(LLT_release) $(LIBUV)
+LIBFILES_debug := $(LLT_debug) $(LIBUV)
+LIBS := $(LIBUTF8PROC)
ifneq ($(OS),WINNT)
LIBS += -lpthread
endif
--

View file

@ -8538,6 +8538,12 @@ in
inherit (darwin.apple_sdk.frameworks) CoreServices ApplicationServices;
};
julia_13 = callPackage ../development/compilers/julia/1.3.nix {
gmp = gmp6;
openblas = openblasCompat;
inherit (darwin.apple_sdk.frameworks) CoreServices ApplicationServices;
};
julia_1 = julia_10;
julia = julia_1;