From 1cb81a69a025cf5abc7a3d4f13436fb299043bd5 Mon Sep 17 00:00:00 2001
From: tbenst <tbenst@gmail.com>
Date: Fri, 8 Feb 2019 14:41:14 -0800
Subject: [PATCH] cmtk: init at 3.3.1 (#54016)

* cmtk: init at 3.3.1
---
 .../science/biology/cmtk/default.nix          | 24 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 26 insertions(+)
 create mode 100644 pkgs/applications/science/biology/cmtk/default.nix

diff --git a/pkgs/applications/science/biology/cmtk/default.nix b/pkgs/applications/science/biology/cmtk/default.nix
new file mode 100644
index 000000000000..ed661db23e0a
--- /dev/null
+++ b/pkgs/applications/science/biology/cmtk/default.nix
@@ -0,0 +1,24 @@
+{stdenv, fetchurl, cmake}:
+
+stdenv.mkDerivation rec {
+  name = "cmtk-3.3.1";
+
+  src = fetchurl {
+    name = "cmtk-source.tar.gz";
+    url = "https://www.nitrc.org/frs/download.php/8198/CMTK-3.3.1-Source.tar.gz//?i_agree=1&download_now=1";
+    sha256 = "1nmsga9m7vcc4y4a6zl53ra3mwlgjwdgsq1j291awkn7zr1az6qs";
+  };
+
+  buildInputs = [cmake];
+
+  meta = with stdenv.lib; {
+    description     = "Computational Morphometry Toolkit ";
+    longDescription = ''A software toolkit for computational morphometry of
+      biomedical images, CMTK comprises a set of command line tools and a
+      back-end general-purpose library for processing and I/O'';
+    maintainers = with maintainers; [ tbenst ];
+    platforms = platforms.all;
+    license     = licenses.gpl3;
+    homepage    = https://www.nitrc.org/projects/cmtk/;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index fb54ee48b1d1..4a53f0c0d2f1 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21499,6 +21499,8 @@ in
 
   bftools = callPackage ../applications/science/biology/bftools { };
 
+  cmtk = callPackage ../applications/science/biology/cmtk { }; 
+
   conglomerate = callPackage ../applications/science/biology/conglomerate { };
 
   dcm2niix = callPackage ../applications/science/biology/dcm2niix { };