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python3Packages.nilearn: unbreak package

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Ben Darwin 2020-01-27 13:52:02 -05:00 committed by Frederik Rietdijk
parent f5c191739b
commit 134b645343
1 changed files with 11 additions and 6 deletions
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17
pkgs/development/python-modules/nilearn/default.nix
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@ -1,5 +1,5 @@
{ stdenv, buildPythonPackage, fetchPypi, nose, nibabel, numpy, scikitlearn
, scipy, matplotlib }:
{ stdenv, buildPythonPackage, fetchPypi, pytest
, nibabel, numpy, pandas, scikitlearn, scipy, matplotlib, joblib }:
buildPythonPackage rec {
pname = "nilearn";
@ -10,19 +10,24 @@ buildPythonPackage rec {
sha256 = "07eb764f2b7b39b487f806a067e394d8ebffff21f57cd1ecdb5c4030b7210210";
};
postPatch = ''
substituteInPlace setup.py --replace "required_packages.append('sklearn')" ""
'';
# https://github.com/nilearn/nilearn/issues/2288
# disable some failing tests
checkPhase = ''
nosetests nilearn/tests \
-e test_cache_mixin_with_expand_user -e test_clean_confounds -e test_detrend \
-e test_clean_detrending -e test_high_variance_confounds
pytest nilearn/tests -k 'not test_cache_mixin_with_expand_user' # accesses ~/
'';
checkInputs = [ nose ];
checkInputs = [ pytest ];
propagatedBuildInputs = [
joblib
matplotlib
nibabel
numpy
pandas
scikitlearn
scipy
];