2019-12-12 00:50:28 +00:00
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{ lib
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, buildPythonPackage
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, fetchFromGitHub
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2020-02-03 17:58:38 +00:00
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, bokeh
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2019-12-12 00:50:28 +00:00
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, emcee
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, matplotlib
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, netcdf4
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, numba
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, numpy
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, pandas
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, pytest
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, scipy
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, setuptools
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, tensorflow-probability
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, xarray
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#, h5py (used by disabled tests)
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#, pymc3 (broken)
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#, pyro-ppl (broken)
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#, pystan (not packaged)
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#, numpyro (not packaged)
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}:
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buildPythonPackage rec {
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pname = "arviz";
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2020-02-03 17:58:38 +00:00
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version = "0.6.1";
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2019-12-12 00:50:28 +00:00
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src = fetchFromGitHub {
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owner = "arviz-devs";
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repo = "arviz";
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rev = version;
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2020-02-03 17:58:38 +00:00
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sha256 = "1qc4piz18hfik32gj4v65ckwv516mppq2ac0jyqs21lhqfwbgv9w";
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2019-12-12 00:50:28 +00:00
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};
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propagatedBuildInputs = [
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# needed to install
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matplotlib
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netcdf4
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pandas
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xarray
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# needed to import
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setuptools
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# not needed to import, but used by many functions
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# and is listed as a dependency in the documentation
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numpy
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scipy
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];
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checkInputs = [
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2020-02-03 17:58:38 +00:00
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bokeh
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2019-12-12 00:50:28 +00:00
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emcee
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numba
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pytest
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tensorflow-probability
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#h5py (used by disabled tests)
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#pymc3 (broken)
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#pyro-ppl (broken)
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#pystan (not packaged)
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#numpyro (not packaged)
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];
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# check requires pymc3 and pyro-ppl, which are currently broken, and pystan
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# and numpyro, which are not yet packaged, some checks also need to make
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# directories and do not have permission to do so. So we can only check part
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# of the package
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# Additionally, there are some failures with the plots test, which revolve
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# around attempting to output .mp4 files through an interface that only wants
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# to output .html files.
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# The following test have been disabled as a result: data_cmdstanpy,
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# data_numpyro, data_pyro, data_pystan, and plots.
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checkPhase = ''
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cd arviz/tests/
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HOME=$TMPDIR pytest test_{data_cmdstan,data_emcee,data,data_tfp,\
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diagnostics,plot_utils,rcparams,stats,stats_utils,utils}.py
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'';
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meta = with lib; {
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description = "ArviZ is a Python package for exploratory analysis of Bayesian models";
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homepage = "https://arviz-devs.github.io/arviz/";
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license = licenses.asl20;
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maintainers = [ maintainers.omnipotententity ];
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};
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}
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