mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-12-16 18:03:22 +00:00
54 lines
1.3 KiB
Nix
54 lines
1.3 KiB
Nix
|
{ gevent
|
||
|
|
, buildPythonPackage
|
||
|
|
, fetchFromGitHub
|
||
|
|
, hostname
|
||
|
|
, pytest
|
||
|
|
, python
|
||
|
|
, stdenv
|
||
|
|
}:
|
||
|
|
|
||
|
|
buildPythonPackage rec {
|
||
|
|
pname = "ruffus";
|
||
|
|
version = "2.8.1";
|
||
|
|
|
||
|
|
src = fetchFromGitHub {
|
||
|
|
owner = "cgat-developers";
|
||
|
|
repo = "${pname}";
|
||
|
|
rev = "v${version}";
|
||
|
|
sha256 = "1gyabqafq4s2sy0prh3k1m8859shzjmfxr7fimx10liflvki96a9";
|
||
|
|
};
|
||
|
|
|
||
|
|
propagatedBuildInputs = [ gevent ];
|
||
|
|
|
||
|
|
postPatch = ''
|
||
|
|
sed -i -e 's|/bin/bash|${stdenv.shell}|' ruffus/test/Makefile
|
||
|
|
sed -i -e 's|\tpytest|\t${pytest}/bin/pytest|' ruffus/test/Makefile
|
||
|
|
sed -i -e 's|\tpython|\t${python.interpreter}|' ruffus/test/Makefile
|
||
|
|
sed -i -e 's|/usr/bin/env bash|${stdenv.shell}|' ruffus/test/run_all_unit_tests.cmd
|
||
|
|
sed -i -e 's|python3|${python.interpreter}|' ruffus/test/run_all_unit_tests3.cmd
|
||
|
|
sed -i -e 's|python %s|${python.interpreter} %s|' ruffus/test/test_drmaa_wrapper_run_job_locally.py
|
||
|
|
'';
|
||
|
|
|
||
|
|
makefile = "ruffus/test/Makefile";
|
||
|
|
|
||
|
|
checkInputs = [
|
||
|
|
gevent
|
||
|
|
hostname
|
||
|
|
pytest
|
||
|
|
];
|
||
|
|
|
||
|
|
checkPhase = ''
|
||
|
|
export HOME=$TMPDIR
|
||
|
|
cd ruffus/test
|
||
|
|
make all PYTEST_OPTIONS="-q --disable-warnings"
|
||
|
|
'';
|
||
|
|
|
||
|
|
meta = with stdenv.lib; {
|
||
|
|
description = "Light-weight Python Computational Pipeline Management";
|
||
|
|
homepage = http://www.ruffus.org.uk;
|
||
|
|
license = licenses.mit;
|
||
|
|
maintainers = [ maintainers.kiwi ];
|
||
|
|
};
|
||
|
|
}
|
||
|
|
|