.. |
ants
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
aragorn
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
bayescan
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
bcftools
|
bcftools: 1.11 -> 1.13
|
2021-07-10 10:15:10 +00:00 |
bedops
|
bedops: 2.4.39 -> 2.4.40
|
2021-07-23 01:02:40 +00:00 |
bedtools
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
bftools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
blast
|
blast: 2.10.0 -> 2.11.0
|
2021-02-06 19:20:56 +00:00 |
bowtie
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
bowtie2
|
Merge pull request #111691 from jbedo/bowtie2
|
2021-08-07 04:03:47 +03:00 |
bppsuite
|
|
|
bwa
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
cd-hit
|
perlPackages.ImageMagick: rename from perlPackages.PerlMagick
|
2021-08-02 20:05:00 +03:00 |
clustal-omega
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
cmtk
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
conglomerate
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
dcm2niix
|
dcm2niix: 1.0.20201102 -> 1.0.20210317
|
2021-05-02 11:10:40 +00:00 |
deeptools
|
deeptools: Fix tests
|
2020-11-25 21:36:37 +01:00 |
delly
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
diamond
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
ecopcr
|
ecopcr: use spaces for indentation
|
2021-01-20 10:53:10 +10:00 |
eggnog-mapper
|
treewide: makeWrapper buildInputs to nativeBuildInputs
|
2021-02-19 20:09:16 +07:00 |
emboss
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
est-sfs
|
est-sfs: fix darwin build
|
2021-05-15 12:10:05 +02:00 |
exonerate
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
2021-01-19 01:16:25 -08:00 |
EZminc
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
2021-01-19 01:16:25 -08:00 |
fastp
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
freebayes
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
hisat2
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
hmmer
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
igv
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
inormalize
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
itsx
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
iv
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
kallisto
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
kent
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
kssd
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
last
|
last: 1178 -> 1179
|
2021-02-21 21:24:17 +00:00 |
lumpy
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
MACS2
|
macs2: init at 2.2.7.1
|
2021-04-14 10:17:53 -04:00 |
macse
|
treewide: convert phases that contain ":" to dont* = true (#130500)
|
2021-07-18 23:42:48 +02:00 |
manta
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
megahit
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
meme-suite
|
meme-suite: init at 5.1.1 (#118603)
|
2021-04-05 22:43:27 +02:00 |
messer-slim
|
messer-slim: 3.2.1 -> 3.6
|
2021-03-04 18:40:37 +00:00 |
migrate
|
treewide: fix double quoted strings in meta.description
|
2021-01-24 19:56:59 +07:00 |
minc-tools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
minc-widgets
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
minia
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
minimap2
|
minimap2: 2.17 -> 2.22
|
2021-08-14 15:55:35 +00:00 |
mni_autoreg
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
mosdepth
|
mosdepth: 0.3.1 -> 0.3.2
|
2021-07-27 09:52:22 +10:00 |
mrbayes
|
mrbayes: 3.2.7 -> 3.2.7a
|
2021-07-27 14:30:23 +02:00 |
mrtrix
|
mrtrix: 3.0.0 -> 3.0.2
|
2020-09-30 22:13:18 -04:00 |
muscle
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
N3
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
ncbi-tools
|
treewide: fix double quoted strings in meta.description
|
2021-01-24 19:56:59 +07:00 |
neuron
|
treewide: ensure pre/post phase hooks are strings
|
2021-08-20 19:08:42 -04:00 |
niftyreg
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
niftyseg
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
obitools
|
treewide: remove stdenv where not needed
|
2021-01-25 18:31:47 +01:00 |
octopus
|
octopus: 0.7.3 -> 0.7.4
|
2021-05-11 08:46:00 +10:00 |
paml
|
treewide: fix double quoted strings in meta.description
|
2021-01-24 19:56:59 +07:00 |
picard-tools
|
picard-tools: 2.25.1 -> 2.25.7
|
2021-08-17 13:50:42 +00:00 |
platypus
|
treewide: makeWrapper buildInputs to nativeBuildInputs
|
2021-02-19 20:09:16 +07:00 |
plink-ng
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
poretools
|
treewide: remove stdenv where not needed
|
2021-01-25 18:31:47 +01:00 |
prodigal
|
treewide: add targetPrefix to hardcoded references to CC=cc
|
2021-02-20 01:01:46 +07:00 |
quast
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
raxml
|
mpi: use mpi attribute consistently as the default MPI implementations
|
2021-01-23 12:15:13 +01:00 |
sambamba
|
sambamba: fix darwin build
|
2021-05-22 20:56:09 +02:00 |
samblaster
|
samblaster: fix darwin build
|
2021-05-18 13:41:51 +02:00 |
samtools
|
treewide: stdenv.lib -> lib
|
2021-01-16 17:58:11 +07:00 |
seaview
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
snpeff
|
treewide: unzip buildInputs to nativeBuildInputs (#112302)
|
2021-02-20 16:01:53 -05:00 |
somatic-sniper
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
sortmerna
|
sortmerna: mark broken on darwin
|
2021-01-26 12:55:33 -05:00 |
spades
|
SPAdes: 3.15.1 -> 3.15.2 + fix license and platform
|
2021-03-23 10:51:01 +01:00 |
stacks
|
stacks: 2.53 -> 2.55
|
2021-03-09 17:19:55 +00:00 |
star
|
star: 2.7.7a -> 2.7.8a
|
2021-02-23 10:38:00 +00:00 |
strelka
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
sumatools
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
svaba
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
tebreak
|
treewide: remove stdenv where not needed
|
2021-01-25 18:31:47 +01:00 |
trimal
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
truvari
|
truvari: 2.0.2 -> 2.1.1 (#126839)
|
2021-06-15 22:14:20 +02:00 |
varscan
|
varscan: deprecate phases
|
2021-08-03 00:04:16 +02:00 |
vcftools
|
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
|
2021-01-19 01:16:25 -08:00 |
whisper
|
treewide: with stdenv.lib; in meta -> with lib;
|
2021-01-11 10:38:22 +01:00 |
xenomapper
|
|
|