forked from mirrors/nixpkgs
4826412f31
The override of `hdf5` to use `usev110Api` avoids the new error:
configure: error: HDF5 was not built with API compatibility version v18. Please recompile your libhdf5 install using '--with-default-api-version=v18'.
76 lines
2 KiB
Nix
76 lines
2 KiB
Nix
{ lib, stdenv
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, fetchpatch
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, fetchurl
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, hdf5
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, m4
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, curl # for DAP
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, removeReferencesTo
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}:
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let
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mpiSupport = hdf5.mpiSupport;
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mpi = hdf5.mpi;
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in stdenv.mkDerivation rec {
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pname = "netcdf";
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version = "4.8.0"; # Remove patch mentioned below on upgrade
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src = fetchurl {
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url = "https://www.unidata.ucar.edu/downloads/netcdf/ftp/${pname}-c-${version}.tar.gz";
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sha256 = "1mfn8qi4k0b8pyar3wa8v0npj69c7rhgfdlppdwmq5jqk88kb5k7";
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};
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patches = [
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# Fixes:
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# *** Checking vlen of compound file...Sorry! Unexpected result, tst_h_atts3.c, line: 289
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# FAIL tst_h_atts3 (exit status: 2)
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# TODO: Remove with next netcdf release (see https://github.com/Unidata/netcdf-c/pull/1980)
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(fetchpatch {
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name = "netcdf-Fix-tst_h_atts3-for-hdf5-1.12.patch";
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url = "https://github.com/Unidata/netcdf-c/commit/9fc8ae62a8564e095ff17f4612874581db0e4db5.patch";
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sha256 = "128kxz5jikq32x5qjmi0xdngi0k336rf6bvbcppvlk5gibg5nk7v";
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})
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];
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postPatch = ''
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patchShebangs .
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# this test requires the net
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for a in ncdap_test/Makefile.am ncdap_test/Makefile.in; do
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substituteInPlace $a --replace testurl.sh " "
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done
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'';
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nativeBuildInputs = [ m4 removeReferencesTo ];
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buildInputs = [ hdf5 curl mpi ];
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passthru = {
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mpiSupport = mpiSupport;
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inherit mpi;
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};
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configureFlags = [
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"--enable-netcdf-4"
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"--enable-dap"
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"--enable-shared"
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"--disable-dap-remote-tests"
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]
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++ (lib.optionals mpiSupport [ "--enable-parallel-tests" "CC=${mpi}/bin/mpicc" ]);
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disallowedReferences = [ stdenv.cc ];
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postFixup = ''
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remove-references-to -t ${stdenv.cc} "$(readlink -f $out/lib/libnetcdf.settings)"
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'';
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doCheck = !mpiSupport;
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meta = {
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description = "Libraries for the Unidata network Common Data Format";
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platforms = lib.platforms.unix;
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homepage = "https://www.unidata.ucar.edu/software/netcdf/";
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license = {
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url = "https://www.unidata.ucar.edu/software/netcdf/docs/copyright.html";
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};
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};
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}
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